mRNA_18826 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|65607
Unique NamemRNA_18826
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A836CG23_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG23_9STRA)

HSP 1 Score: 275 bits (704), Expect = 2.510e-92
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 2
Query:    2 LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
            LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ
Sbjct:   36 LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 176          
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: D8LQ21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ21_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 1.920e-44
Identity = 83/141 (58.87%), Postives = 96/141 (68.09%), Query Frame = 2
Query:    2 LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
            LDG   A  +G+++LR  + + A GRVLEV VGTGLNL +YRRD VS I+AVDLSP ML+QA  R    G++ +     MD E L F    FDTVVDTF LCVF DP AALREM RVC   GRVLLLENSKS+   L AYQ
Sbjct:   50 LDGGWAASAIGLEELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSGIEAVDLSPGMLSQASSRSESLGMERLVKLSVMDAEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSDFGPLAAYQ 190          
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A6H5K3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H3_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 8.430e-39
Identity = 82/141 (58.16%), Postives = 93/141 (65.96%), Query Frame = 2
Query:    2 LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
            LDG   A  +G++       ++A GRVLEV VGTGLNL +YRRD VS I+AVDLSP ML+QA  R    G++ +     MDVE L F    FDTVVDTF LCVF DP AALREM RVC   GRVLLLENSKS    L AYQ
Sbjct:  294 LDGGWAASAIGLE-------ASATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGMLSQASSRSESLGMKRLVNLSVMDVEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSNFGPLAAYQ 427          
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A836BNX8_9CHLO (Methyltransf_11 domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BNX8_9CHLO)

HSP 1 Score: 136 bits (343), Expect = 5.130e-37
Identity = 80/162 (49.38%), Postives = 100/162 (61.73%), Query Frame = 2
Query:    2 LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDR-------------------VSQIDAVDLSPSMLAQAEQRGVEAGLQD--IAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
            LDG + A+ LG  QLRQ + + ARGRVLEVAVGTGLNLPYY  D                    VS ++AVDLSP ML QA +R   +        ++ + DV  L + D +FD+VVDTF LCVF DP  AL+EM RV   +GRVLLLE+++S+ PLL AYQ
Sbjct:   67 LDGGVAAEALGFPQLRQQLLAQARGRVLEVAVGTGLNLPYYSWDERSGAASGDEAAAAVAESRGVSSVEAVDLSPGMLDQARRRTQASPALSGRSISFRQADVTALPYGDDSFDSVVDTFSLCVFPDPGTALKEMARVVRPSGRVLLLEHTRSDNPLLAAYQ 228          
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A150G4S0_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G4S0_GONPE)

HSP 1 Score: 128 bits (321), Expect = 3.310e-34
Identity = 82/169 (48.52%), Postives = 101/169 (59.76%), Query Frame = 2
Query:    2 LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYY-----RRDR------------------VSQIDAVDLSPSMLAQAEQR--GVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCA---TNGRVLLLENSKSEVPLLGAYQ 424
            LDG   A+ LG  QLRQ +   ARG VLEVAVGTGLNLPYY     R++                   V+ ++ VDLSP MLAQA +R    EA      ++ + DV  L F D +FD+VVDTF LCVF DP AAL EM RV +   + GRVLLLE+++S+ PLL AYQ
Sbjct:   15 LDGGAAAEALGFPQLRQELLREARGHVLEVAVGTGLNLPYYSWGPQRQEPPGQGQQKGPGQEAPAPSGVTALETVDLSPGMLAQARRRVAAAEALSSRPISFTQADVAALPFPDSSFDSVVDTFSLCVFPDPQAALNEMARVVSPRSSGGRVLLLEHARSDNPLLAAYQ 183          
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A7V3UI24_9BACT (Methyltransferase domain-containing protein (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3UI24_9BACT)

HSP 1 Score: 126 bits (317), Expect = 4.200e-34
Identity = 72/132 (54.55%), Postives = 88/132 (66.67%), Query Frame = 2
Query:   29 LGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
            LG+ +LR+ +   A GRVLE+AVGTG NL YY   R  QI A DLSP+MLA A +R    GL    ++  MD E L FRD +FDTVVD+  LC F DPVAALREM RVC  +GR+LLLE+ +S    LG +Q
Sbjct:   37 LGVRKLRRQLLQRASGRVLEIAVGTGKNLRYY--PRTCQITAGDLSPAMLAMARKRANRLGLS--ISFLVMDAEALAFRDQSFDTVVDSLTLCTFPDPVAALREMARVCRADGRILLLEHGRSYYEWLGRWQ 164          
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A7S1J1P3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J1P3_9EUGL)

HSP 1 Score: 124 bits (311), Expect = 7.410e-34
Identity = 67/121 (55.37%), Postives = 85/121 (70.25%), Query Frame = 2
Query:   62 STARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
            S+ +G+VLEVAVGTGLNLP Y   +V  + A+DLSP ML +AE +    G Q      +MD++ L F+D TFDTVVDTF LCVF DP+ AL+EM RV   NG++LLLENS+SE   + AYQ
Sbjct:    1 SSVKGKVLEVAVGTGLNLPLYPWAQVLDLKAIDLSPGMLREAEGKLSLMGDQSKVELLQMDIKDLGFQDKTFDTVVDTFSLCVFDDPLRALQEMRRVIKDNGQLLLLENSRSENGAVAAYQ 121          
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A7S2B2V6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B2V6_9STRA)

HSP 1 Score: 125 bits (314), Expect = 9.270e-34
Identity = 67/127 (52.76%), Postives = 84/127 (66.14%), Query Frame = 2
Query:   44 LRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
            LR ++   A GRVLEV VGTGLNLP+Y   RV+ ++ +DLS  ML+ A+ +     L D      MDV  L F   +FDTVVDTF LCVF DP  AL+EM RVCA +GR+LLLE+S +E PL+  YQ
Sbjct:    1 LRAMLIGKASGRVLEVGVGTGLNLPFYDTTRVTSLEGIDLSDGMLSIAQTKRKAIPLNDKVRLSRMDVSALDFPSRSFDTVVDTFSLCVFPDPQKALQEMCRVCAPDGRLLLLEHSAAENPLVALYQ 127          
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A5J4XF40_9CHLO (Methyltransferase type 11 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XF40_9CHLO)

HSP 1 Score: 125 bits (313), Expect = 3.310e-33
Identity = 67/141 (47.52%), Postives = 90/141 (63.83%), Query Frame = 2
Query:    2 LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
            LD    A+  GI QLRQ + S A G VLEVA+GTG+NL  Y R +V ++  +D+S  ML QA+ +    G      + + DVE L F   TFD VVDTF LCVF  P+ A++E+ RV    G++LLLE+S+S++PLLG YQ
Sbjct:   25 LDAGAAAEAFGIPQLRQTLISAAYGNVLEVAIGTGINLRLYNRQQVQKLVGLDVSQGMLQQAQGKTHTDGQGLQVTFQQGDVECLPFGSNTFDCVVDTFSLCVFPKPLQAVKELARVLTPGGKLLLLEHSRSKLPLLGWYQ 165          
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A8J6CFI3_DIALT (Methyltransf_11 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CFI3_DIALT)

HSP 1 Score: 124 bits (310), Expect = 1.770e-32
Identity = 68/141 (48.23%), Postives = 87/141 (61.70%), Query Frame = 2
Query:    2 LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
            LDG + A  LG D+LR++  + A G VLEV  GTGLNLP Y   RV  + A+D S  ML  A  R    GL     +   DV  L F DGTFD V+DTF LCVF DP+AA+ EM RV A +G ++ +E+ +++  LLGAYQ
Sbjct:   52 LDGGLAASRLGFDELRRVACARAHGAVLEVGAGTGLNLPLYDWSRVRSLVALDASSGMLDVARARADGLGLAGKVTFARGDVAALPFDDGTFDVVLDTFSLCVFADPIAAMAEMRRVLAPSGTIIAVEHQRAD-GLLGAYQ 191          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CG23_9STRA2.510e-92100.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
D8LQ21_ECTSI1.920e-4458.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3H3_9PHAE8.430e-3958.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836BNX8_9CHLO5.130e-3749.38Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A150G4S0_GONPE3.310e-3448.52Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A7V3UI24_9BACT4.200e-3454.55Methyltransferase domain-containing protein (Fragm... [more]
A0A7S1J1P3_9EUGL7.410e-3455.37Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S2B2V6_9STRA9.270e-3452.76Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A5J4XF40_9CHLO3.310e-3347.52Methyltransferase type 11 n=1 Tax=Trebouxia sp. A1... [more]
A0A8J6CFI3_DIALT1.770e-3248.23Methyltransf_11 domain-containing protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_406contigContig_406:414..1185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|65607|CE65606_14
BRITEko00000,ko01000,ko03029
KEGG koko:K17803
Descriptionmethyltransferase activity
COG categoryQ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0500@1|root,KOG4300@2759|Eukaryota
Evalue1.18e-43
Seed ortholog2880.D8LQ21
Hectar predicted targeting categoryother localisation
TranscriptId65929
TrackFilteredModels1
ProteinId65607
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|65607gene_18826Tribonema minus UTEX_B_3156 geneContig_406 414..1185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|65607Trimin1|65607|CE65606_14Tribonema minus UTEX_B_3156 polypeptideContig_406 414..1169 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18826_3exon_18826_3Tribonema minus UTEX_B_3156 exonContig_406 414..509 -
exon_18826_2exon_18826_2Tribonema minus UTEX_B_3156 exonContig_406 741..885 -
exon_18826_1exon_18826_1Tribonema minus UTEX_B_3156 exonContig_406 1002..1185 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18826CDS_18826Tribonema minus UTEX_B_3156 CDSContig_406 1002..1169 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_18826UTR5_18826Tribonema minus UTEX_B_3156 five_prime_UTRContig_406 1170..1185 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18826 ID=mRNA_18826|Name=jgi.p|Trimin1|65607|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=425bp|location=Sequence derived from alignment at Contig_406:414..1185- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCTAGATGGCAGCATCATGGCCCAGGGCCTTGGCATAGACCAGCTGAGAC
AGATCATGACATCAACGGCGCGAGGCCGGGTGCTGGAAGTGGCTGTGGGA
ACCGGCCTCAATCTGCCCTACTACCGCCGTGATAGGGTTTCCCAGATAGA
TGCGGTAGATCTGAGCCCATCCATGCTGGCGCAGGCGGAACAACGAGGCG
TGGAGGCAGGGTTGCAGGACATTGCCGCCTATCATGAGATGGATGTGGAG
CAGTTGAAGTTTAGGGATGGGACATTTGACACGGTGGTCGACACATTCGG
GCTGTGTGTCTTCGGCGACCCAGTGGCAGCACTGCGCGAGATGGGGAGGG
TCTGCGCAACCAATGGACGGGTGTTGCTGCTGGAGAACAGCAAGAGTGAA
GTGCCTTTGTTAGGTGCCTACCAGG
back to top

protein sequence of jgi.p|Trimin1|65607

>Trimin1|65607|CE65606_14 ID=Trimin1|65607|CE65606_14|Name=jgi.p|Trimin1|65607|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=136bp
MAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLS
PSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFG
DPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ
back to top

mRNA from alignment at Contig_406:414..1185-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18826 ID=mRNA_18826|Name=jgi.p|Trimin1|65607|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=772bp|location=Sequence derived from alignment at Contig_406:414..1185- (Tribonema minus UTEX_B_3156 )
GCTAGATGGCAGCATCATGGCCCAGGGCCTTGGCATAGACCAGCTGAGAC AGATCATGACATCAACGGCGCGAGGCCGGGTGCTGGAAGTGGCTGTGGGA ACCGGCCTCAATCTGCCCTACTACCGCCGTGATAGGGTTTCCCAGATAGA TGCGGTAGATCTGAGCCCATCCATGCTGGCGCAGGTTCGTGCCACCTGCA GCAGCACGTGATGATCGCTCAAATGTAATACTCCCATGAGTACATGATTT CGCGAGTACAGATGACGAACGCTGCTGTCTCTCTGGCCGCCGCTTGCCAG GCGGAACAACGAGGCGTGGAGGCAGGGTTGCAGGACATTGCCGCCTATCA TGAGATGGATGTGGAGCAGTTGAAGTTTAGGGATGGGACATTTGACACGG TGGTCGACACATTCGGGCTGTGTGTCTTCGGCGACCCAGTGGCAGGTGGG TCTGATAGTGGCAGATAGTCTTTACGCTGTCCATGACACTGCTGACATGA GTTCAAACGATGAAAACTAGTGGCCACTCAACGCGGACTTGCTGTTGAGG TCACTCTTGCAAGCACATCTACGTAGACCGTATTGACTAGTGTCAAATGG CACGTCCCTCATCTTGCCGTCTGTTGCCTGACAGTCTGCTGCGCATCATG ACTTCCTTGTGCTCGCACTACGACAGCACTGCGCGAGATGGGGAGGGTCT GCGCAACCAATGGACGGGTGTTGCTGCTGGAGAACAGCAAGAGTGAAGTG CCTTTGTTAGGTGCCTACCAGG
back to top

Coding sequence (CDS) from alignment at Contig_406:414..1185-

>mRNA_18826 ID=mRNA_18826|Name=jgi.p|Trimin1|65607|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=409bp|location=Sequence derived from alignment at Contig_406:414..1185- (Tribonema minus UTEX_B_3156 )
ATGGCCCAGGGCCTTGGCATAGACCAGCTGAGACAGATCATGACATCAAC
GGCGCGAGGCCGGGTGCTGGAAGTGGCTGTGGGAACCGGCCTCAATCTGC
CCTACTACCGCCGTGATAGGGTTTCCCAGATAGATGCGGTAGATCTGAGC
CCATCCATGCTGGCGCAGGCGGAACAACGAGGCGTGGAGGCAGGGTTGCA
GGACATTGCCGCCTATCATGAGATGGATGTGGAGCAGTTGAAGTTTAGGG
ATGGGACATTTGACACGGTGGTCGACACATTCGGGCTGTGTGTCTTCGGC
GACCCAGTGGCAGCACTGCGCGAGATGGGGAGGGTCTGCGCAACCAATGG
ACGGGTGTTGCTGCTGGAGAACAGCAAGAGTGAAGTGCCTTTGTTAGGTG
CCTACCAGG
back to top