Trimin1|149384|gw1.11.187.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|149384
Unique Name	Trimin1\|149384\|gw1.11.187.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	127

Homology

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BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: A0A836CMF8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF8_9STRA)

HSP 1 Score: 271 bits (693), Expect = 2.080e-92
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0

Query:    1 LRVIQRNLVYVIGLGPGITAGEAASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 127
            LRVIQRNLVYVIGLGPGITAGEAASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI
Sbjct:    1 LRVIQRNLVYVIGLGPGITAGEAASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 127

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BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: D7FX15_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX15_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 3.110e-55
Identity = 88/128 (68.75%), Postives = 101/128 (78.91%), Query Frame = 0

Query:    1 LRVIQRNLVYVIGLGPGIT-AGEAASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 127
            LRV++RNLVY IGL P          P YFGQYG IAK+V+NHH GV  DDPR+GSASAY+TF  +EDAW+A+ +VDGF L GR +RASFGTTKYCNSFLR L CNN DCLYLHELGDE DRFTK+E+
Sbjct:   72 LRVVRRNLVYAIGLSPNFAQVNTLKQPEYFGQYGEIAKLVINHHEGVPQDDPRYGSASAYITFRRQEDAWAAVCSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDEEDRFTKDEV 199

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BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: A0A6H5JE06_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE06_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 2.420e-52
Identity = 86/125 (68.80%), Postives = 97/125 (77.60%), Query Frame = 0

Query:    1 LRVIQRNLVYVIGLGPGIT-AGEAASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTK 124
            LRV++R LVY IGL P          P YFGQYG IAK+V+NHH GV  DDPR+GSASAY+TF  +EDAW+A+ +VDGF L GR +RASFGTTKYCNSFLR L CNN DCLYLHELGDE DRFTK
Sbjct:   71 LRVVRRTLVYAIGLSPNFAQVNTLKQPEYFGQYGEIAKLVINHHEGVPQDDPRYGSASAYITFRRQEDAWAAVCSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDEEDRFTK 195

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BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: A0A7S4D5P1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5P1_HETAK)

HSP 1 Score: 179 bits (453), Expect = 4.200e-51
Identity = 86/128 (67.19%), Postives = 101/128 (78.91%), Query Frame = 0

Query:    1 LRVIQRNLVYVIGLGPGITAGE-AASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 127
            +RVIQRNLVYVIGL   I + E      +FGQYGRI K+VVNH+HG    DPRHGSASAY+TF HK+DA SAI+AVDG+  +GR +RASFGTTKYCN+FLR L C N +CLYLHELGD  DR+T+EEI
Sbjct:  114 VRVIQRNLVYVIGLPLSIASEEDLRRGEFFGQYGRIHKVVVNHNHGAPPKDPRHGSASAYITFCHKDDARSAIQAVDGYQWDGRLIRASFGTTKYCNNFLRNLPCTNPECLYLHELGDSEDRYTREEI 241

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BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: A0A7S2GN38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GN38_9STRA)

HSP 1 Score: 179 bits (454), Expect = 7.450e-50
Identity = 85/132 (64.39%), Postives = 104/132 (78.79%), Query Frame = 0

Query:    1 LRVIQRNLVYVIGLGPGITAGEAASP-PYFGQYGRIAKIVVNHHHGVNADDPRHGSAS----AYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 127
            +RV+QRNLVYVIG+ P I + E      YFGQ+G+I K+VVN +H   + DPR+ SAS    AY+TFAHKEDA + I+AVDGFW++GR+VRASFGTTKYCNSFLR L+C N DCLYLHELG+E D FTKE+I
Sbjct:  154 IRVVQRNLVYVIGISPSIASEETLRRGEYFGQFGKIVKVVVNRNHSGGSGDPRNASASLSASAYITFAHKEDAKACIQAVDGFWMDGRNVRASFGTTKYCNSFLRNLSCTNPDCLYLHELGEEEDSFTKEQI 285

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BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: B8BXU6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXU6_THAPS)

HSP 1 Score: 160 bits (406), Expect = 1.700e-47
Identity = 73/127 (57.48%), Postives = 96/127 (75.59%), Query Frame = 0

Query:    1 LRVIQRNLVYVIGLGPGITAGEAA-SPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEE 126
            +RVI+RNLVY +G+ P I   E    P YFGQYG+IAKIV+N +H  N  DPR  SASAYVTF HKED  + I A+DGF+ +GR++RAS+GT+KYC++F++ + CNN DC YLH +GD+ D FTK+E
Sbjct:   90 MRVIRRNLVYAVGMPPSIATEELLRKPEYFGQYGKIAKIVINRNH--NPGDPRRASASAYVTFVHKEDTLACILALDGFYHDGRNIRASYGTSKYCSAFIKSVKCNNPDCTYLHHMGDQEDTFTKQE 214

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BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: A0A835Z6B5_9STRA (C3H1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6B5_9STRA)

HSP 1 Score: 166 bits (419), Expect = 5.110e-45
Identity = 108/262 (41.22%), Postives = 114/262 (43.51%), Query Frame = 0

Query:    1 LRVIQRNLVYVIGLGPGITAGEAASPPYFGQYGRIAKIV-------------------------------------------VNHHHGVNADDPRHGSASAYVTFAHK-------------------------------------------------------EDAWSAIKAVDGFWLEGRH-------------------------------------VRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 127
            LRVIQRNLVYVIGL P I+AGEAA+ PYFGQYGRIAK+                                                 GV+ DDPRHGSASAYVTF +K                                                       EDAWSAIKA+DG WLE RH                                     VRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI
Sbjct:  208 LRVIQRNLVYVIGLSPSISAGEAAAAPYFGQYGRIAKVTRRPVASVLRARWCGLQRAACEACRADDLLXXXXXXXXXXXXXXXXXXXGVSEDDPRHGSASAYVTFVYKDARMRHLQVPGELSGVTGLSAVAGRADALARGCGLADAFHTAMLGSSQPQGRVHAEDAWSAIKAIDGLWLEERHEGXXXXXXXXXXXXLASSEXXXXXXXXXXXXXXXXXXVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 469

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BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: K0T133_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T133_THAOC)

HSP 1 Score: 163 bits (412), Expect = 3.360e-44
Identity = 75/128 (58.59%), Postives = 99/128 (77.34%), Query Frame = 0

Query:    1 LRVIQRNLVYVIGLGPGITAGE-AASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 127
            +RVI+RNLVY +GL P +   E    P YFGQYG+IAK+VVN +H  N  DPR  SASAYVTF+HKEDA + I A+DGF+ +GR+VRAS+GT+KYC++F++ + CNN DC YLH +G++ D FTK+EI
Sbjct:  202 MRVIRRNLVYAVGLPPNVATEENLRRPEYFGQYGKIAKVVVNRNH--NPGDPRRSSASAYVTFSHKEDALACILALDGFYHDGRNVRASYGTSKYCSAFIKSVRCNNPDCTYLHHMGEKEDTFTKQEI 327

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BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: A0A835YKN6_9STRA (RING/Ubox like zinc-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN6_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.750e-44
Identity = 72/119 (60.50%), Postives = 91/119 (76.47%), Query Frame = 0

Query:    1 LRVIQRNLVYVIGLGPGITAGE-AASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDE 118
            L ++QRNLVYV+GL P   + E    P +FGQ+G+I K+V N + G+   D RHGSASAY++F H+EDA + I +VDGF LEGR V+A+FGTTKYCNSFLR L CNN +C+YLHELGDE
Sbjct:   94 LPLVQRNLVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSASAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDE 212

[Close]

BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: D7FLE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLE0_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 7.780e-44
Identity = 76/128 (59.38%), Postives = 94/128 (73.44%), Query Frame = 0

Query:    1 LRVIQRNLVYVIGLGPGITAGEAAS-PPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 127
            +RV+QRNLVY  GL  G+ + E    P  FGQYG+I KI ++      A +PR G+ SA++TFAHKEDA + I A DGFWLEGR +R++FGTTKYC ++LR   C+N DCLYLHELGDE DRFTKEEI
Sbjct:  161 MRVVQRNLVYATGLPAGLDSEEVLRRPENFGQYGKIYKIAIS---VSQASEPRPGNFSAHITFAHKEDALACILATDGFWLEGRQLRSNFGTTKYCATYLRNSPCSNPDCLYLHELGDEEDRFTKEEI 285

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|149384 vs. uniprot

BLAST of jgi.p|Trimin1|149384 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CMF8_9STRA	2.080e-92	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]
D7FX15_ECTSI	3.110e-55	68.75	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5JE06_9PHAE	2.420e-52	68.80	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A7S4D5P1_HETAK	4.200e-51	67.19	Hypothetical protein (Fragment) n=2 Tax=Heterosigm...	[more]
A0A7S2GN38_9STRA	7.450e-50	64.39	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
B8BXU6_THAPS	1.700e-47	57.48	Uncharacterized protein (Fragment) n=1 Tax=Thalass...	[more]
A0A835Z6B5_9STRA	5.110e-45	41.22	C3H1-type domain-containing protein n=1 Tax=Tribon...	[more]
K0T133_THAOC	3.360e-44	58.59	Uncharacterized protein n=1 Tax=Thalassiosira ocea...	[more]
A0A835YKN6_9STRA	3.750e-44	60.50	RING/Ubox like zinc-binding domain-containing prot...	[more]
D7FLE0_ECTSI	7.780e-44	59.38	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 8..88 e-value: 2.8E-9 score: 46.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 8..89 e-value: 3.4E-21 score: 76.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 28..85 e-value: 3.0E-5 score: 23.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..92 score: 11.042404
IPR039780	CCR4-NOT transcription complex subunit 4	PANTHER	PTHR12603	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	coord: 2..127
None	No IPR available	PANTHER	PTHR12603:SF0	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 4	coord: 2..127
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 89..116 score: 10.023429
IPR034261	CNOT4, RNA recognition motif	CDD	cd12438	RRM_CNOT4	coord: 2..100 e-value: 1.27159E-45 score: 141.522
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..91

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_11	contig	Contig_11:1337473..1340096 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|149384	mRNA_4833	Tribonema minus UTEX_B_3156	mRNA	Contig_11 1337473..1340096 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|149384|gw1.11.187.1 ID=Trimin1|149384|gw1.11.187.1|Name=jgi.p|Trimin1|149384|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=127bp
LRVIQRNLVYVIGLGPGITAGEAASPPYFGQYGRIAKIVVNHHHGVNADD
PRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLR
GLACNNGDCLYLHELGDERDRFTKEEI

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003954	RRM_dom_euk
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR039780	Mot2
IPR000571	Znf_CCCH
IPR034261	CNOT4_RRM
IPR035979	RBD_domain_sf