mRNA_4833 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: A0A836CMF8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF8_9STRA) HSP 1 Score: 271 bits (693), Expect = 2.080e-92 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 Query: 1 LRVIQRNLVYVIGLGPGITAGEAASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 381 LRVIQRNLVYVIGLGPGITAGEAASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI Sbjct: 1 LRVIQRNLVYVIGLGPGITAGEAASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 127
BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: D7FX15_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX15_ECTSI) HSP 1 Score: 191 bits (485), Expect = 3.110e-55 Identity = 88/128 (68.75%), Postives = 101/128 (78.91%), Query Frame = 1 Query: 1 LRVIQRNLVYVIGLGPGIT-AGEAASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 381 LRV++RNLVY IGL P P YFGQYG IAK+V+NHH GV DDPR+GSASAY+TF +EDAW+A+ +VDGF L GR +RASFGTTKYCNSFLR L CNN DCLYLHELGDE DRFTK+E+ Sbjct: 72 LRVVRRNLVYAIGLSPNFAQVNTLKQPEYFGQYGEIAKLVINHHEGVPQDDPRYGSASAYITFRRQEDAWAAVCSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDEEDRFTKDEV 199
BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: A0A6H5JE06_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE06_9PHAE) HSP 1 Score: 185 bits (470), Expect = 2.420e-52 Identity = 86/125 (68.80%), Postives = 97/125 (77.60%), Query Frame = 1 Query: 1 LRVIQRNLVYVIGLGPGIT-AGEAASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTK 372 LRV++R LVY IGL P P YFGQYG IAK+V+NHH GV DDPR+GSASAY+TF +EDAW+A+ +VDGF L GR +RASFGTTKYCNSFLR L CNN DCLYLHELGDE DRFTK Sbjct: 71 LRVVRRTLVYAIGLSPNFAQVNTLKQPEYFGQYGEIAKLVINHHEGVPQDDPRYGSASAYITFRRQEDAWAAVCSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDEEDRFTK 195
BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: A0A7S4D5P1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5P1_HETAK) HSP 1 Score: 179 bits (453), Expect = 4.200e-51 Identity = 86/128 (67.19%), Postives = 101/128 (78.91%), Query Frame = 1 Query: 1 LRVIQRNLVYVIGLGPGITAGE-AASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 381 +RVIQRNLVYVIGL I + E +FGQYGRI K+VVNH+HG DPRHGSASAY+TF HK+DA SAI+AVDG+ +GR +RASFGTTKYCN+FLR L C N +CLYLHELGD DR+T+EEI Sbjct: 114 VRVIQRNLVYVIGLPLSIASEEDLRRGEFFGQYGRIHKVVVNHNHGAPPKDPRHGSASAYITFCHKDDARSAIQAVDGYQWDGRLIRASFGTTKYCNNFLRNLPCTNPECLYLHELGDSEDRYTREEI 241
BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: A0A7S2GN38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GN38_9STRA) HSP 1 Score: 179 bits (454), Expect = 7.450e-50 Identity = 85/132 (64.39%), Postives = 104/132 (78.79%), Query Frame = 1 Query: 1 LRVIQRNLVYVIGLGPGITAGEAASP-PYFGQYGRIAKIVVNHHHGVNADDPRHGSAS----AYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 381 +RV+QRNLVYVIG+ P I + E YFGQ+G+I K+VVN +H + DPR+ SAS AY+TFAHKEDA + I+AVDGFW++GR+VRASFGTTKYCNSFLR L+C N DCLYLHELG+E D FTKE+I Sbjct: 154 IRVVQRNLVYVIGISPSIASEETLRRGEYFGQFGKIVKVVVNRNHSGGSGDPRNASASLSASAYITFAHKEDAKACIQAVDGFWMDGRNVRASFGTTKYCNSFLRNLSCTNPDCLYLHELGEEEDSFTKEQI 285
BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: B8BXU6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXU6_THAPS) HSP 1 Score: 160 bits (406), Expect = 1.700e-47 Identity = 73/127 (57.48%), Postives = 96/127 (75.59%), Query Frame = 1 Query: 1 LRVIQRNLVYVIGLGPGITAGEAA-SPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEE 378 +RVI+RNLVY +G+ P I E P YFGQYG+IAKIV+N +H N DPR SASAYVTF HKED + I A+DGF+ +GR++RAS+GT+KYC++F++ + CNN DC YLH +GD+ D FTK+E Sbjct: 90 MRVIRRNLVYAVGMPPSIATEELLRKPEYFGQYGKIAKIVINRNH--NPGDPRRASASAYVTFVHKEDTLACILALDGFYHDGRNIRASYGTSKYCSAFIKSVKCNNPDCTYLHHMGDQEDTFTKQE 214
BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: A0A835Z6B5_9STRA (C3H1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6B5_9STRA) HSP 1 Score: 166 bits (419), Expect = 5.110e-45 Identity = 108/262 (41.22%), Postives = 114/262 (43.51%), Query Frame = 1 Query: 1 LRVIQRNLVYVIGLGPGITAGEAASPPYFGQYGRIAKIV-------------------------------------------VNHHHGVNADDPRHGSASAYVTFAHK-------------------------------------------------------EDAWSAIKAVDGFWLEGRH-------------------------------------VRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 381 LRVIQRNLVYVIGL P I+AGEAA+ PYFGQYGRIAK+ GV+ DDPRHGSASAYVTF +K EDAWSAIKA+DG WLE RH VRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI Sbjct: 208 LRVIQRNLVYVIGLSPSISAGEAAAAPYFGQYGRIAKVTRRPVASVLRARWCGLQRAACEACRADDLLXXXXXXXXXXXXXXXXXXXGVSEDDPRHGSASAYVTFVYKDARMRHLQVPGELSGVTGLSAVAGRADALARGCGLADAFHTAMLGSSQPQGRVHAEDAWSAIKAIDGLWLEERHEGXXXXXXXXXXXXLASSEXXXXXXXXXXXXXXXXXXVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 469
BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: K0T133_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T133_THAOC) HSP 1 Score: 163 bits (412), Expect = 3.360e-44 Identity = 75/128 (58.59%), Postives = 99/128 (77.34%), Query Frame = 1 Query: 1 LRVIQRNLVYVIGLGPGITAGE-AASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 381 +RVI+RNLVY +GL P + E P YFGQYG+IAK+VVN +H N DPR SASAYVTF+HKEDA + I A+DGF+ +GR+VRAS+GT+KYC++F++ + CNN DC YLH +G++ D FTK+EI Sbjct: 202 MRVIRRNLVYAVGLPPNVATEENLRRPEYFGQYGKIAKVVVNRNH--NPGDPRRSSASAYVTFSHKEDALACILALDGFYHDGRNVRASYGTSKYCSAFIKSVRCNNPDCTYLHHMGEKEDTFTKQEI 327
BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: A0A835YKN6_9STRA (RING/Ubox like zinc-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN6_9STRA) HSP 1 Score: 152 bits (384), Expect = 3.750e-44 Identity = 72/119 (60.50%), Postives = 91/119 (76.47%), Query Frame = 1 Query: 1 LRVIQRNLVYVIGLGPGITAGE-AASPPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDE 354 L ++QRNLVYV+GL P + E P +FGQ+G+I K+V N + G+ D RHGSASAY++F H+EDA + I +VDGF LEGR V+A+FGTTKYCNSFLR L CNN +C+YLHELGDE Sbjct: 94 LPLVQRNLVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSASAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDE 212
BLAST of jgi.p|Trimin1|149384 vs. uniprot
Match: D7FLE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLE0_ECTSI) HSP 1 Score: 157 bits (396), Expect = 7.780e-44 Identity = 76/128 (59.38%), Postives = 94/128 (73.44%), Query Frame = 1 Query: 1 LRVIQRNLVYVIGLGPGITAGEAAS-PPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 381 +RV+QRNLVY GL G+ + E P FGQYG+I KI ++ A +PR G+ SA++TFAHKEDA + I A DGFWLEGR +R++FGTTKYC ++LR C+N DCLYLHELGDE DRFTKEEI Sbjct: 161 MRVVQRNLVYATGLPAGLDSEEVLRRPENFGQYGKIYKIAIS---VSQASEPRPGNFSAHITFAHKEDALACILATDGFWLEGRQLRSNFGTTKYCATYLRNSPCSNPDCLYLHELGDEEDRFTKEEI 285 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149384 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4833 ID=mRNA_4833|Name=jgi.p|Trimin1|149384|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_11:1337473..1340096- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTGCGCGTGATCCAGCGCAACCTGGTCTACGTCATTGGGCTCGGCCCCGGback to top protein sequence of jgi.p|Trimin1|149384 >Trimin1|149384|gw1.11.187.1 ID=Trimin1|149384|gw1.11.187.1|Name=jgi.p|Trimin1|149384|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=127bp LRVIQRNLVYVIGLGPGITAGEAASPPYFGQYGRIAKIVVNHHHGVNADDback to top mRNA from alignment at Contig_11:1337473..1340096- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4833 ID=mRNA_4833|Name=jgi.p|Trimin1|149384|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2624bp|location=Sequence derived from alignment at Contig_11:1337473..1340096- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_11:1337473..1340096- >mRNA_4833 ID=mRNA_4833|Name=jgi.p|Trimin1|149384|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=381bp|location=Sequence derived from alignment at Contig_11:1337473..1340096- (Tribonema minus UTEX_B_3156 )back to top |