mRNA_1704 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|346712
Unique NamemRNA_1704
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|346712 vs. uniprot
Match: A0A836CD72_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD72_9STRA)

HSP 1 Score: 799 bits (2063), Expect = 2.650e-282
Identity = 626/626 (100.00%), Postives = 626/626 (100.00%), Query Frame = 2 
Query:   23 MVDMQRDEREINLSIPASAQQSAVTGRSAMSSGPAVQLLPGVYNPVSHHQPAAMQHXXXXXXXXXXXXXQXXQAAQPSHHYQWQGQRTPVATAATPPAGARYAFVAPPPAHTTSPSGSAIDHDAGAGNSGMYVLPEQGGWVEQYPEGWYTTATGGAEWAAAAAAAGWGTARLPYGGAWGYAPAPAPPAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYSPAPAYARTAGLAAAAXAATAMPANTYSSHVDPTNMRYTKLSIYAAFSDGGLLQDAADRLANGSLSPADFPQMRVVQHRGVYFSLDNRRLWAFKTAKITSVPVLVMPLFRKLRLRLETQQYKDSVELRWPNSLVAAGAAGPLETAPNTPLSHGKGLLQAEXXXXXXXXXXXXXMPAGSGPLTTDSDATTVVTNAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPDDGEELVGEMRGLTLQGVSELTRTPHKYGTGIGKHDVVPLPPRPTFGAAPVSSIAKSRDNSPTAAANAAKAPAFVGTASSGSGGDASR 1900
            MVDMQRDEREINLSIPASAQQSAVTGRSAMSSGPAVQLLPGVYNPVSHHQPAAMQHXXXXXXXXXXXXXQXXQAAQPSHHYQWQGQRTPVATAATPPAGARYAFVAPPPAHTTSPSGSAIDHDAGAGNSGMYVLPEQGGWVEQYPEGWYTTATGGAEWAAAAAAAGWGTARLPYGGAWGYAPAPAPPAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYSPAPAYARTAGLAAAAXAATAMPANTYSSHVDPTNMRYTKLSIYAAFSDGGLLQDAADRLANGSLSPADFPQMRVVQHRGVYFSLDNRRLWAFKTAKITSVPVLVMPLFRKLRLRLETQQYKDSVELRWPNSLVAAGAAGPLETAPNTPLSHGKGLLQAEXXXXXXXXXXXXXMPAGSGPLTTDSDATTVVTNAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPDDGEELVGEMRGLTLQGVSELTRTPHKYGTGIGKHDVVPLPPRPTFGAAPVSSIAKSRDNSPTAAANAAKAPAFVGTASSGSGGDASR
Sbjct:    1 MVDMQRDEREINLSIPASAQQSAVTGRSAMSSGPAVQLLPGVYNPVSHHQPAAMQHXXXXXXXXXXXXXQXXQAAQPSHHYQWQGQRTPVATAATPPAGARYAFVAPPPAHTTSPSGSAIDHDAGAGNSGMYVLPEQGGWVEQYPEGWYTTATGGAEWAAAAAAAGWGTARLPYGGAWGYAPAPAPPAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYSPAPAYARTAGLAAAAXAATAMPANTYSSHVDPTNMRYTKLSIYAAFSDGGLLQDAADRLANGSLSPADFPQMRVVQHRGVYFSLDNRRLWAFKTAKITSVPVLVMPLFRKLRLRLETQQYKDSVELRWPNSLVAAGAAGPLETAPNTPLSHGKGLLQAEXXXXXXXXXXXXXMPAGSGPLTTDSDATTVVTNAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPDDGEELVGEMRGLTLQGVSELTRTPHKYGTGIGKHDVVPLPPRPTFGAAPVSSIAKSRDNSPTAAANAAKAPAFVGTASSGSGGDASR 626
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BLAST of jgi.p|Trimin1|346712 vs. uniprot
Match: UPI001FD90DEC (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Asticcacaulis solisilvae TaxID=1217274 RepID=UPI001FD90DEC)

HSP 1 Score: 74.3 bits (181), Expect = 7.710e-10
Identity = 33/78 (42.31%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  866 VDPTNMRYTKLSIYAAFSDGGLLQDAADRLANGSLSPADFPQMRVVQHRGVYFSLDNRRLWAFKTAKITSVPVLVMPL 1099
            ++P ++R+T+ ++   FSDGG + DA  +L NG++S  DFP +R+V+H G  +SLDNRRL AF  A++ ++PV  + +
Sbjct: 1274 MNPRDIRFTQDTVSPNFSDGGTINDAVAQLRNGAVSADDFPAIRLVEHDGKLWSLDNRRLVAFNAAQLDNIPVKTLDM 1351
[Close]
BLAST of jgi.p|Trimin1|346712 vs. uniprot
Match: A0A2R5GKD9_9STRA (Replication factor C subunit 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GKD9_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.230e-9
Identity = 35/89 (39.33%), Postives = 56/89 (62.92%), Query Frame = 2 
Query:  866 VDPTNMRYTKLSIYAAFSDGGLLQDAADRLANGSLSPADFPQMRVVQHRGVYFSLDNRRLWAFKTAKITSVPVLVMP--LFRKLRLRLE 1126
            + P  + Y+   I   F DG L+++  D L    +SP D P + V++H+G+ ++LDNRRLWAFK A ++S+PV++    L  KLR +L+
Sbjct:  207 LSPEAIYYSVSEISGFFDDGRLVEETVDDLLEEIISPFDIPAITVIEHKGLMYTLDNRRLWAFKEADVSSIPVILQDSRLSYKLRRQLD 295
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BLAST of jgi.p|Trimin1|346712 vs. uniprot
Match: A0A433PUD8_9FUNG (Uncharacterized protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PUD8_9FUNG)

HSP 1 Score: 68.6 bits (166), Expect = 8.870e-9
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 2 
Query:  866 VDPTNMRYTKLSIYAAFSDGGLLQDAADRLANGSLSPADFPQMRVVQHRGVYFSLDNRRLWAFKTAKITSV 1078
            ++P N+RYT+ SI   F +G  L   A ++ +G L+  D P +RV  H GV+++LDNRRLW  K A IT+V
Sbjct:  189 INPQNVRYTQDSIAPTFRNGNSLMQTALKIRHGLLNSNDLPSIRVRAHNGVWYALDNRRLWVLKEAGITNV 259
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BLAST of jgi.p|Trimin1|346712 vs. uniprot
Match: A0A2R6WW31_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WW31_MARPO)

HSP 1 Score: 66.6 bits (161), Expect = 2.250e-8
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 2 
Query:  866 VDPTNMRYTKLSIYAAFS---DGGLLQDAADRLANGSLSPADFPQMRVVQHRGVYFSLDNRRLWAFKTAKITSVPVLVMPLFRKLRL 1117
            VDP  + +T+ SI   F    +   + DA   + NG++  ++F +MRVV H G  +SLDNRRLW FK AK+  + V V+P  R  R+
Sbjct:    8 VDPDTLLFTQDSIAVRFKKPYEKEKIDDAVISILNGAVRVSEFKRMRVVDHEGRLWSLDNRRLWVFKKAKVRKIVVDVVPFHRNPRI 94
[Close]
BLAST of jgi.p|Trimin1|346712 vs. uniprot
Match: A0A484QN72_9ZZZZ (Hemagglutinin-like secreted protein n=2 Tax=plant metagenome TaxID=1297885 RepID=A0A484QN72_9ZZZZ)

HSP 1 Score: 67.4 bits (163), Expect = 6.930e-8
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 2 
Query:  863 HVDPTNMRYTKLSIYAAFSDGGLLQDAADRLANGSLSPADFPQMRVVQHRGVYFSLDNRRLWAFKTAKITSVPVLVMP 1096
            + DP+ +R+T+ SI   F +   LQ   DRL NGS+SP DFP +RV +  G+ +SLDNRRL A   A    VPV ++P
Sbjct:  480 YADPSQIRFTQDSIANKFKNDQGLQGVVDRLKNGSISPEDFPPIRVFKKDGLVYSLDNRRLLAASQA---GVPVKIVP 554
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BLAST of jgi.p|Trimin1|346712 vs. uniprot
Match: A0A484SE57_9ZZZZ (Large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family n=1 Tax=plant metagenome TaxID=1297885 RepID=A0A484SE57_9ZZZZ)

HSP 1 Score: 67.4 bits (163), Expect = 8.680e-8
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 2 
Query:  863 HVDPTNMRYTKLSIYAAFSDGGLLQDAADRLANGSLSPADFPQMRVVQHRGVYFSLDNRRLWAFKTAKITSVPVLVMP 1096
            + DP+ +R+T+ SI   F +   LQ   DRL NGS+SP DFP +RV +  G+ +SLDNRRL A   A    VPV ++P
Sbjct:  721 YADPSQIRFTQDSIANKFKNDQGLQGVVDRLKNGSISPEDFPPIRVFKKDGLVYSLDNRRLLAASQA---GVPVKIVP 795
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BLAST of jgi.p|Trimin1|346712 vs. uniprot
Match: A0A165UK57_9HYPH (DUF637 domain-containing protein n=1 Tax=Pseudovibrio sp. Ad26 TaxID=989410 RepID=A0A165UK57_9HYPH)

HSP 1 Score: 66.2 bits (160), Expect = 1.920e-7
Identity = 35/100 (35.00%), Postives = 56/100 (56.00%), Query Frame = 2 
Query:  866 VDPTNMRYTKLSIYAAFSDGGLLQDAADRLANGSLSPADFPQMRVVQHRGVYFSLDNRRLWAFKTA--KITSVPVLVMPLFRKLRLRLETQQYKDSVELR 1159
            ++P+++R+T+ SI A FSDG  + D    L NGS+ P+  P +R  +  G  FSLDNRRL+A++ A   + +VP     + R  R +  T      + +R
Sbjct:  675 LNPSSVRFTQNSIGAKFSDGRSVDDLIIGLRNGSVDPSSLPPIRTFEANGQLFSLDNRRLYAYRQAGVDVPTVPATAAEIARDARFKFSTINGGQDIAVR 774
[Close]
BLAST of jgi.p|Trimin1|346712 vs. uniprot
Match: UPI00178192D2 (RHS repeat-associated core domain-containing protein n=1 Tax=Ensifer sp. ENS05 TaxID=2769277 RepID=UPI00178192D2)

HSP 1 Score: 63.9 bits (154), Expect = 4.640e-7
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 2 
Query:  815 AAAXAATAMPANTYSSHVDPTNMRYTKLSIYAAFSDGGLLQDAADRLANGSLSPADFPQMRVVQHRGVYFSLDNRRLWAFKTA 1063
            AAA +  A  A     +VDP+ +R+++ SI A F +GG + D    L  G++ P D P +R+V+  GV +SLDNRR+ AF+ A
Sbjct:  250 AAASSKAAKAARMAEFYVDPSAVRFSQDSIKATFKEGGSIDDLVQSLKAGTVQPKDIPAVRLVEKDGVLYSLDNRRVEAFRRA 332
[Close]
BLAST of jgi.p|Trimin1|346712 vs. uniprot
Match: UPI00112602C9 (DUF637 domain-containing protein n=1 Tax=Cupriavidus pinatubonensis TaxID=248026 RepID=UPI00112602C9)

HSP 1 Score: 64.7 bits (156), Expect = 4.920e-7
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 2 
Query:  848 NTYSSHVDPTNMRYTKLSIYAAFSDGGLLQDAADRLANGSLSPADFPQMRVVQHRGVYFSLDNRRLWAFKTA 1063
            +T S   DP ++R+T+ SI + FS+G  LQDA   L +GSLSP   P +RV +  G++++LDNRRL+    A
Sbjct:  493 STLSGLADPNSIRFTQSSIGSTFSNGTSLQDAIGALQSGSLSPTSLPPIRVFEKDGLFYTLDNRRLFVTSQA 564
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346712 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A836CD72_9STRA2.650e-282100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001FD90DEC7.710e-1042.31LysM peptidoglycan-binding domain-containing prote... [more]
A0A2R5GKD9_9STRA1.230e-939.33Replication factor C subunit 2 n=1 Tax=Hondaea fer... [more]
A0A433PUD8_9FUNG8.870e-945.07Uncharacterized protein n=1 Tax=Endogone sp. FLAS-... [more]
A0A2R6WW31_MARPO2.250e-840.23Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A484QN72_9ZZZZ6.930e-846.15Hemagglutinin-like secreted protein n=2 Tax=plant ... [more]
A0A484SE57_9ZZZZ8.680e-846.15Large exoprotein involved in heme utilization or a... [more]
A0A165UK57_9HYPH1.920e-735.00DUF637 domain-containing protein n=1 Tax=Pseudovib... [more]
UPI00178192D24.640e-740.96RHS repeat-associated core domain-containing prote... [more]
UPI00112602C94.920e-744.44DUF637 domain-containing protein n=1 Tax=Cupriavid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:1454625..1460754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|346712|estExt_Genemark1.C_Ctg_40171
Descriptiondomain, Protein
COG categoryU
Max annot lvl2|Bacteria
EggNOG OGsCOG3209@1|root,COG3210@1|root,COG3209@2|Bacteria,COG3210@2|Bacteria
Evalue6.69e-08
Seed ortholog264198.Reut_A2923
Hectar predicted targeting categoryother localisation
TranscriptId347034
TrackFilteredModels1
ProteinId346712
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346712gene_1704Tribonema minus UTEX_B_3156 geneContig_4 1454625..1460754 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346712Trimin1|346712|estExt_Genemark1.C_Ctg_40171Tribonema minus UTEX_B_3156 polypeptideContig_4 1455039..1460732 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1704_9exon_1704_9Tribonema minus UTEX_B_3156 exonContig_4 1454625..1455203 -
exon_1704_8exon_1704_8Tribonema minus UTEX_B_3156 exonContig_4 1455616..1455705 -
exon_1704_7exon_1704_7Tribonema minus UTEX_B_3156 exonContig_4 1456271..1456627 -
exon_1704_6exon_1704_6Tribonema minus UTEX_B_3156 exonContig_4 1457418..1457435 -
exon_1704_5exon_1704_5Tribonema minus UTEX_B_3156 exonContig_4 1457608..1457625 -
exon_1704_4exon_1704_4Tribonema minus UTEX_B_3156 exonContig_4 1457755..1458003 -
exon_1704_3exon_1704_3Tribonema minus UTEX_B_3156 exonContig_4 1458573..1458693 -
exon_1704_2exon_1704_2Tribonema minus UTEX_B_3156 exonContig_4 1459441..1460243 -
exon_1704_1exon_1704_1Tribonema minus UTEX_B_3156 exonContig_4 1460673..1460754 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_1704UTR3_1704Tribonema minus UTEX_B_3156 three_prime_UTRContig_4 1454625..1455038 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1704CDS_1704Tribonema minus UTEX_B_3156 CDSContig_4 1460673..1460732 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_1704UTR5_1704Tribonema minus UTEX_B_3156 five_prime_UTRContig_4 1460733..1460754 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1704 ID=mRNA_1704|Name=jgi.p|Trimin1|346712|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2317bp|location=Sequence derived from alignment at Contig_4:1454625..1460754- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGGGAAGGGAGGCAGTCCCGACATGGTGGACATGCAACGGGATGAGAGGG
AAATAAATCTGTCAATCCCAGCGAGCGCGCAGCAGTCAGCTGTCACGGGC
AGGTCAGCCATGTCGAGCGGCCCCGCCGTGCAGCTCCTGCCCGGCGTCTA
CAACCCAGTGTCGCACCACCAGCCCGCGGCCATGCAGCACCAGCACTACC
ACCACCACCACCAACACGCACCCGCCCCACAGCACCAGCAGGCCGCGCAG
CCCAGCCACCACTACCAGTGGCAGGGGCAGCGCACGCCGGTCGCCACCGC
CGCGACCCCCCCCGCAGGCGCCCGCTACGCCTTCGTAGCCCCCCCGCCGG
CCCACACGACGTCGCCCTCCGGCAGCGCCATCGACCACGACGCTGGCGCC
GGCAACAGCGGCATGTACGTGCTCCCGGAGCAGGGCGGGTGGGTGGAGCA
GTACCCCGAGGGCTGGTACACCACGGCGACTGGAGGCGCGGAGTGGGCGG
CAGCGGCGGCGGCGGCGGGCTGGGGCACGGCGCGGCTGCCGTACGGCGGC
GCGTGGGGGTACGCGCCCGCGCCCGCGCCGCCGGCGCACCACCACCACCA
CCCTGCCGCCGCCGCCGCGGCCGCGTACTACGCGGTGCCGCCGCACCTGC
TGCACCACGCGGCGGCGGCGGCGCCGCTGCTGCCGCGCAGCAGCGCGCCC
ATGCGCGGAGGCATGGCAGCGCGCGGCAGCCTGAGCGGCGGCGGGAGCAG
CGGCGGCGCGGCCGCGGCGGTGTACAGCCCCGCGCCGGCGTACGCGCGCA
CGGCGGGGCTCGCTGCTGCCGCTGCGGCGGCGACGGCGATGCCCGCCAAC
ACGTACTCTAGCCACGTGGACCCGACGAACATGAGGTACACCAAGCTGAG
CATCTACGCGGCCTTCTCCGACGGCGGCCTGCTGCAGGACGCCGCCGACA
GGCTGGCCAACGGCTCGCTCTCGCCCGCCGACTTCCCGCAGATGCGCGTC
GTGCAGCACCGCGGCGTGTACTTCTCGCTCGACAACCGGCGCCTGTGGGC
CTTCAAGACGGCCAAGATCACCTCCGTGCCCGTACTCGTCATGCCGCTCT
TCCGCAAGCTGCGCCTGCGCCTCGAGACGCAGCAGTACAAGGACAGCGTC
GAGCTGCGCTGGCCCAACTCGCTCGTCGCCGCGGGTGCCGCGGGGCCGCT
CGAGACGGCCCCCAACACGCCGCTCTCGCACGGCAAGGGGCTGCTGCAGG
CGGAGGGGCTGCTGCAGGCGGAGGGGCTGCTGCAGGCGGAGGGCATGCCC
GCCGGCTCAGGCCCGCTCACCACCGACTCGGACGCCACCACGGTCGTCAC
CAACGCCGTCACCACCTCCGCGGAGGACCGCCGCCGCCACCTGCTCAGCG
ACAGCGCGACGGTCGTGGAGCACATGTCGCCGCCCGTATCGCCGTCGCCG
CGCGCGGCCGGCAGCAGCGGCGGCGCCGCGGCGGCGCTGGCGGCGGCTGT
CGCGACCGCGTCCGCCGGCGCCGCGGCGCTCGATGGCGGCAGCAGCGTCG
GCAGCGGCGGCGCTGGCGCCGGCGCCGGCGGCGCGCTCAGCAGCGACGAC
GAGGAGGACGGCATGCGCACGCCGCCGTCGTCGCCGGATGATGGCGAGGA
GCTGGTCGGCGAGATGCGTGGGCTCACCCTGCAAGGCGTGTCGGAGCTGA
CGCGCACGCCCCACAAGTACGGCACCGGCATTGGCAAGCACGACGTGGTG
CCGCTGCCGCCGCGGCCCACCTTCGGCGCCGCCCCCGTCAGCTCCATCGC
CAAGAGCCGCGACAACAGCCCCACCGCCGCCGCCAACGCCGCCAAGGCGC
CTGCCTTTGTGGGCACCGCATCCAGCGGCAGCGGCGGCGACGCGTCGCGC
TAGGCCCGACGCCGCCCCGATGATTTTCTCAGCCATCGCTGCGCGGCACG
GCGGCGGCGGCAGCAGCGGCAGCGCCGGGCGCCACAGGCGGCAAGTTTGT
AACAGTTTCACGGGCGGCGCACAGCCCCCGCGCGCTGCCGCCGCCGCTGC
CGCGCACGCGCGCTGCGCGCTCTTGGGCGCGCAGCGCGGTTGCGCCGCGT
CGCCGTCGCCGCCGCCGCTGAAATGAATGTCTCTGGGTGACACACCCAGC
CATGACTGCGGCGGCGGCGCCAGCGCCAGCGGCAGTACTGGCAGTGACAG
TGCTTCACTTGTGCATCAGGGTAGCGCGGAGCCCCGGCGGAAGTTTAAGA
GGACCCGTTTGTGCATAAAGAATGTGTCTCTTTGGTTTTTGCAGGGGGGC
TCCGCCTAAAACATGGG
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protein sequence of jgi.p|Trimin1|346712

>Trimin1|346712|estExt_Genemark1.C_Ctg_40171 ID=Trimin1|346712|estExt_Genemark1.C_Ctg_40171|Name=jgi.p|Trimin1|346712|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=627bp
MVDMQRDEREINLSIPASAQQSAVTGRSAMSSGPAVQLLPGVYNPVSHHQ
PAAMQHQHYHHHHQHAPAPQHQQAAQPSHHYQWQGQRTPVATAATPPAGA
RYAFVAPPPAHTTSPSGSAIDHDAGAGNSGMYVLPEQGGWVEQYPEGWYT
TATGGAEWAAAAAAAGWGTARLPYGGAWGYAPAPAPPAHHHHHPAAAAAA
AYYAVPPHLLHHAAAAAPLLPRSSAPMRGGMAARGSLSGGGSSGGAAAAV
YSPAPAYARTAGLAAAAAAATAMPANTYSSHVDPTNMRYTKLSIYAAFSD
GGLLQDAADRLANGSLSPADFPQMRVVQHRGVYFSLDNRRLWAFKTAKIT
SVPVLVMPLFRKLRLRLETQQYKDSVELRWPNSLVAAGAAGPLETAPNTP
LSHGKGLLQAEGLLQAEGLLQAEGMPAGSGPLTTDSDATTVVTNAVTTSA
EDRRRHLLSDSATVVEHMSPPVSPSPRAAGSSGGAAAALAAAVATASAGA
AALDGGSSVGSGGAGAGAGGALSSDDEEDGMRTPPSSPDDGEELVGEMRG
LTLQGVSELTRTPHKYGTGIGKHDVVPLPPRPTFGAAPVSSIAKSRDNSP
TAAANAAKAPAFVGTASSGSGGDASR*
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mRNA from alignment at Contig_4:1454625..1460754-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1704 ID=mRNA_1704|Name=jgi.p|Trimin1|346712|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6130bp|location=Sequence derived from alignment at Contig_4:1454625..1460754- (Tribonema minus UTEX_B_3156 )
CGGGAAGGGAGGCAGTCCCGACATGGTGGACATGCAACGGGATGAGAGGG
AAATAAATCTGTCAATCCCAGCGAGCGCGCAGGTGAGCCGGACATCAGCG
CGGCCTGCGCCTGCGAAGGTAGCTGCGTTACGACGTTGACTTGCATTCCC
GACGCTAGGAGAAGCGCACATTGCTCGCACTCCCGCTAAGCTGGGTGTCG
CGCAGGCACCTGGTCGCTTGACCGGGACTCTTATTCGACTCCGCCAAACA
AGCAAGAACGCGTTAGGCCAGGCATCTTATGCAATTGCGTAATTTGCAAC
GGCAAAGTGCTGCCATCAACAACATGATGTAGGCCGGCATCCTATGTTGG
CATTGGCAACGTCGCTCAGCGAATTTTCCGCGACACATCAACCATCACAT
CAAAAATCAGGACCGAAGCAGTCGCTGGCGCCGCACTACTCTGCAAACGC
GTGGGGCTCGTGCTCAACTATGGAACTGCCTTTCCCTGCAACTGCTGCTG
CGTCTCCTCAGCAGTCAGCTGTCACGGGCAGGTCAGCCATGTCGAGCGGC
CCCGCCGTGCAGCTCCTGCCCGGCGTCTACAACCCAGTGTCGCACCACCA
GCCCGCGGCCATGCAGCACCAGCACTACCACCACCACCACCAACACGCAC
CCGCCCCACAGCACCAGCAGGCCGCGCAGCCCAGCCACCACTACCAGTGG
CAGGGGCAGCGCACGCCGGTCGCCACCGCCGCGACCCCCCCCGCAGGCGC
CCGCTACGCCTTCGTAGCCCCCCCGCCGGCCCACACGACGTCGCCCTCCG
GCAGCGCCATCGACCACGACGCTGGCGCCGGCAACAGCGGCATGTACGTG
CTCCCGGAGCAGGGCGGGTGGGTGGAGCAGTACCCCGAGGGCTGGTACAC
CACGGCGACTGGAGGCGCGGAGTGGGCGGCAGCGGCGGCGGCGGCGGGCT
GGGGCACGGCGCGGCTGCCGTACGGCGGCGCGTGGGGGTACGCGCCCGCG
CCCGCGCCGCCGGCGCACCACCACCACCACCCTGCCGCCGCCGCCGCGGC
CGCGTACTACGCGGTGCCGCCGCACCTGCTGCACCACGCGGCGGCGGCGG
CGCCGCTGCTGCCGCGCAGCAGCGCGCCCATGCGCGGAGGCATGGCAGCG
CGCGGCAGCCTGAGCGGCGGCGGGAGCAGCGGCGGCGCGGCCGCGGCGGT
GTACAGCCCCGCGCCGGCGTACGCGCGCACGGCGGGGCTCGCTGCTGCCG
CTGCGGCGGCGACGGCGATGCCCGCCAACACGTACTCTAGCCACGTGGAC
CCGACGAACATGAGGTGAGCGAGGAGCGTGCCGCGCGTGCGGGCTGTGTG
GAGGCTATAGAGCAGTGCACGCAGCGCTGCGGTGATGGCATGGTAGGGCT
GCCAGCGTGTGTAGCCACGTGTGGCTGCGTGGCGGGTAGCAGTAGCGGCA
GTAGCGGCAGCAGCAGCAGCAACAGCAGAGCCACGGCACATTGTTGCTTC
ATCATGCACGGTTATGTGTGTTGAGGTACACGTCTCTGTCTGCCTGCGCC
GCAGTGTAGCACTTGGCAATCGTGCGCTGCGTCCGGCGCACGGACCGTCA
CGCGCAGCGCCACGCACGGAGTTTGCACGGCGCTGCGGAGCGGAGGCTGT
GACGTGCCCCACCTGCGTGCACTCCACTGCGGTGCCTGCATGTGCCTTCT
GCTTGCACGACCCAACTCGCCGATGGCGGTGCGGTCGCGTGCGCGCGCAC
AGCGCGTTGGTCCGCTGTCGCTGAGCGCGTTCCACTGCCAACAGCCGTGT
GCACTCGGGAGCCGCTCCTCGCGTCGCCCGCAAGCGGCCCTGCTCGCCGA
CGCGCGCTGCGATGCGCACACCTGGGCGTCCGACTGCGTCCCTACGATCT
ACCGCATGATGTTATCAGCGTGTCAGCGTCGCATACACGCTCCCCCTCTG
CGCGTCCCCCCCCATCCCCCCATCCCCCATCGCCCTGCACCGCAAGGCCT
GACTCCCCCCCCCGCGCCCCCCCCCCCCCCCCCCCCCCGTGCTGTCTTGT
GCGCTGAGCAGGTACACCAAGCTGAGCATCTACGCGGCCTTCTCCGACGG
CGGCCTGCTGCAGGACGCCGCCGACAGGCTGGCCAACGGCTCGCTCTCGC
CCGCCGACTTCCCGCAGATGCGCGTCGTGCAGGTACCTACATACCCCTGG
CGTAGGCGTAGACATGCGCGTGCACGTGCGTAGGCGCAGCGGCAGCAGCA
GCAGCAGCAGCAGCGCCCTGGCTGGCAGAACGGGGCAGCGGCTCGCTCAT
TTCCGCCTACGGCTCTTTTATGCGCTCACTTTCCCGTGTATGTGCACTCA
AGTAGCTGCGTGCGTAGGTGTGCGCTTATGTGCGCACGCGCGCAGCGGCG
GCGGCTGCAGCAGTGCTCTGGCCGCCACGTTTTGCTCATTCACAGGCCAT
GGCCACGCCATGCGCTCACTTGCGGGTGCGTGCATGTGTACCCTGTGTAG
GAGCAGCATTTGCGTGCAGCAGAAGAGACCCCCCTGCTGCTGTGTCTGCC
TCTCCTGCGTCTTGTTTCGACAGTCAATCGCTGCATTGTGACAGTCGATT
GCTGCATTGCGTCATTGCGAGTGCTGCCGCTCAGCTCTCCCCCCTCCCCT
CCCCCCCCCCATCGCTCCGCATGCATCTGCACCGTCTGCCCCCTCTCGTT
CAGCACGCCTTGACCCCCCCCTCCCCCTCCCCCCCCCACCCCCCTCTGCA
GCACCGCGGCGTGTACTTCTCGCTCGACAACCGGCGCCTGTGGGCCTTCA
AGACGGCCAAGATCACCTCCGTGCCCGTACTCGTCATGCCGCTCTTCCGC
AAGCTGCGCCTGCGCCTCGAGACGCAGCAGTACAAGGACAGCGTCGAGCT
GCGCTGGCCCAACTCGCTCGTCGCCGCGGGTGCCGCGGGGCCGCTCGAGA
CGGCCCCCAACACGCCGCTCTCGCACGGCAAGGGGCTGCTGCAGGCGGAG
GTGAGCAGGGTCAAAGCGCCGCAGCCTGCGACTGATCGTGACTCAAACGC
GTGCTCGAAGCGGCATGGAAATAAATCATGTAGGTATAGAAGTAGACGGC
GCCCAACACGCCGCTCTCGCACGGGCAAGGGGCTGCTGCAGGCGGAGGTG
AGCAAGCGCACGCACGCGTGCTCCCCCCCCCCCCCCCCCTCAAATGCATG
GTCAAAGCGTCGCAGCCCACGATCAATCGTGACTCGAACGCATGCTCAAA
GCGGCGGCATAGACTTAGAAGTAGGTACAGAAGTACACGGCGCCCAATAT
GCCGCACTCGCACGGCCAGGGGCTGCTGCAGGCGGAGGTGACCCCTCCCC
CCCCCCCCGCCCAGCTCCCAAATGCATGATCAAAGCGGTATGTTGTATAT
TGTGTAGCAGGTATTTCATCGGGCGTTCACTCTGAGTCAACGGCACAAGT
GCTGCAAGGGCTTTTGTCACAGAACCACACATGTAGCTGCGGCGTCTGCT
TTCAACTGTGACAGTGTTGTCGCCGGAGCGGTGATGACGTGATGCGTCTG
TGCACGCTCGAATATGGGTGTTCTTGCATGCCAAAGGGCTTTCAAGGTTG
CTCCGCGCTGCCAGCCGGCCGCGCAGATGCGCATTTGACTTGCTGCGTGG
ATATAGTCTTGATTTAGCGTTGTCGTCCAATGATGTAAAGGCTTGAGTAC
GTTCATTGGCGCTCAAGCACTTTGCCGTACATGGTGTCGCTGGCCAGAGT
CGCGCACCGCAGAAGGCTGAGTTGCAATTGCTGCACAGCATGGGCGCAGC
CTTGTACCTCAATCGCAGCAACGGCCATGTTGCTTTGGGCAGCACCGCTG
CGCGCGTATGCCGCGCGCAACGACTTTCCGCAGCGCCTGGTTAAAACGCA
GCAGCGCATTGAGCACTGCTGCATGTACTGTTTTTGCTACTGTCTCTGCC
CTGTCCGGCATTGGCAATGCACTGTGACGTGCTCGCCCGCACCCGACGGG
CAGCATCTTCGTACATAGAAAGCTTTGTAGGGGGCTTAATTCAATTGGCC
CCTTCTCCCTCTCCACAACCCCCCCTCACCCCGCCCCCCCCCCCCCCCTC
TCCCCCCCTTCCCCCCCTCCCCCGCAGGGCATGCCCGCCGGCTCAGGCCC
GCTCACCACCGACTCGGACGCCACCACGGTCGTCACCAACGCCGTCACCA
CCTCCGCGGAGGACCGCCGCCGCCACCTGCTCAGCGACAGCGCGACGGTC
GTGGAGCACATGTCGCCGCCCGTATCGCCGTCGCCGCGCGCGGCCGGCAG
CAGCGGCGGCGCCGCGGCGGCGCTGGCGGCGGCTGTCGCGACCGCGTCCG
CCGGCGCCGCGGCGCTCGATGGCGGCAGCAGCGTCGGCAGCGGCGGCGCT
GGCGCCGGCGCCGGCGGCGCGCTCAGCAGCGACGACGAGGAGGACGGCAT
GCGCACGCCGCCGTCGTCGCCGGATGATGGCGAGGTGAGCGCGAAGCTGT
GCGCGTTCATAGGGTAACGCGGCCGCTCGCTCGCTTCCCGACAGCGACGC
TTCGAGCGGGGGGAGTGCAGCCCCCCCCCCGGGCCGCCCCCCGCACAGCA
AGAGCTCCTCCGTGTCTTTGCCCTGTGCAATTCAGAAGCAACGCGCGCCT
TCGCGCGCGCTGTGTTTCGGTCACCAAGTGCTGATTGGCAAGGCTTCCAA
GACCAAGGTTGGGGGTGTCAGGCAGCAGTTCTTTGTGTTGCTGGCCCTCA
GACCTCACGCCTTGGTTTCTGAGCTAGCTAGTGTGCTGCCTCTGCAAGGC
GAGCGAGCCGGTTGCGTTGGGACTTTCCGCGGCGTGTGTCGCGCGCGTGT
CGCCCATTTGTTGTTGCCAGCGCCTGCATGCCCGACTTTCCTCGTGCCTG
CGCTGCGCCGCACATGCGCCCGCGCCAGTGTTTGCCCTCCAGACCCTTTG
GCACTCTGATGGCGTGTTCCACACATGGAGAGCTCAGGCTGAGCACTGAC
TTCCCCTTCCCCCCCCCCCCCCCTTCTTCCCCCCTATGTGTGTCTGCAGG
AGCTGGTCGGCGAGATGCGTGGGCTCACCCTGCAAGGCGTGTCGGAGCTG
ACGCGCACGCCCCACAAGTACGGCACCGGCATTGGCAAGGTGCGTTTGCG
CTTTGCACGTGTATCGCCCCTTTGAAGCAGCAGGGCGCGCCTTTTGCACC
GCTCGAAGTGCGTCCGTACCAACGCGCCTCCTGCGGTTCTTTTCCTGGCT
ATCAAGCGGCAGCATTGCATGGCGATGCTGTCAGGCATGAAGCACCACGG
CCTAGCCCGCCGCCTTCTATGGCTATGATGTTTTTCTGTGCGAGCCACCA
GTGCTCTCGAGCTCAGCGGCACCCATATGAAGCTGCGTACGCTGATGGCC
AGCTGCCGCACTCGCCGTCTGCGGGGCCGCATGTGCTGCGCATGCACACC
GTAACAGCAGCGGTTCGTTGATGCTCACGCAGCAGCTCGCATCGCACAAC
CTCAATACAACCGCTGCACCCGCCGTACCCCTCTCCGCACGCCTCTGGCA
GCACGACGTGGTGCCGCTGCCGCCGCGGCCCACCTTCGGCGCCGCCCCCG
TCAGCTCCATCGCCAAGAGCCGCGACAACAGCCCCACCGCCGCCGCCAAC
GCCGCCAAGGCGCCTGCCTTTGTGGGCACCGCATCCAGCGGCAGCGGCGG
CGACGCGTCGCGCTAGGCCCGACGCCGCCCCGATGATTTTCTCAGCCATC
GCTGCGCGGCACGGCGGCGGCGGCAGCAGCGGCAGCGCCGGGCGCCACAG
GCGGCAAGTTTGTAACAGTTTCACGGGCGGCGCACAGCCCCCGCGCGCTG
CCGCCGCCGCTGCCGCGCACGCGCGCTGCGCGCTCTTGGGCGCGCAGCGC
GGTTGCGCCGCGTCGCCGTCGCCGCCGCCGCTGAAATGAATGTCTCTGGG
TGACACACCCAGCCATGACTGCGGCGGCGGCGCCAGCGCCAGCGGCAGTA
CTGGCAGTGACAGTGCTTCACTTGTGCATCAGGGTAGCGCGGAGCCCCGG
CGGAAGTTTAAGAGGACCCGTTTGTGCATAAAGAATGTGTCTCTTTGGTT
TTTGCAGGGGGGCTCCGCCTAAAACATGGG
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Coding sequence (CDS) from alignment at Contig_4:1454625..1460754-

>mRNA_1704 ID=mRNA_1704|Name=jgi.p|Trimin1|346712|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1881bp|location=Sequence derived from alignment at Contig_4:1454625..1460754- (Tribonema minus UTEX_B_3156 )
ATGGTGGACATGCAACGGGATGAGAGGGAAATAAATCTGTCAATCCCAGC
GAGCGCGCAGCAGTCAGCTGTCACGGGCAGGTCAGCCATGTCGAGCGGCC
CCGCCGTGCAGCTCCTGCCCGGCGTCTACAACCCAGTGTCGCACCACCAG
CCCGCGGCCATGCAGCACCAGCACTACCACCACCACCACCAACACGCACC
CGCCCCACAGCACCAGCAGGCCGCGCAGCCCAGCCACCACTACCAGTGGC
AGGGGCAGCGCACGCCGGTCGCCACCGCCGCGACCCCCCCCGCAGGCGCC
CGCTACGCCTTCGTAGCCCCCCCGCCGGCCCACACGACGTCGCCCTCCGG
CAGCGCCATCGACCACGACGCTGGCGCCGGCAACAGCGGCATGTACGTGC
TCCCGGAGCAGGGCGGGTGGGTGGAGCAGTACCCCGAGGGCTGGTACACC
ACGGCGACTGGAGGCGCGGAGTGGGCGGCAGCGGCGGCGGCGGCGGGCTG
GGGCACGGCGCGGCTGCCGTACGGCGGCGCGTGGGGGTACGCGCCCGCGC
CCGCGCCGCCGGCGCACCACCACCACCACCCTGCCGCCGCCGCCGCGGCC
GCGTACTACGCGGTGCCGCCGCACCTGCTGCACCACGCGGCGGCGGCGGC
GCCGCTGCTGCCGCGCAGCAGCGCGCCCATGCGCGGAGGCATGGCAGCGC
GCGGCAGCCTGAGCGGCGGCGGGAGCAGCGGCGGCGCGGCCGCGGCGGTG
TACAGCCCCGCGCCGGCGTACGCGCGCACGGCGGGGCTCGCTGCTGCCGC
TGCGGCGGCGACGGCGATGCCCGCCAACACGTACTCTAGCCACGTGGACC
CGACGAACATGAGGTACACCAAGCTGAGCATCTACGCGGCCTTCTCCGAC
GGCGGCCTGCTGCAGGACGCCGCCGACAGGCTGGCCAACGGCTCGCTCTC
GCCCGCCGACTTCCCGCAGATGCGCGTCGTGCAGCACCGCGGCGTGTACT
TCTCGCTCGACAACCGGCGCCTGTGGGCCTTCAAGACGGCCAAGATCACC
TCCGTGCCCGTACTCGTCATGCCGCTCTTCCGCAAGCTGCGCCTGCGCCT
CGAGACGCAGCAGTACAAGGACAGCGTCGAGCTGCGCTGGCCCAACTCGC
TCGTCGCCGCGGGTGCCGCGGGGCCGCTCGAGACGGCCCCCAACACGCCG
CTCTCGCACGGCAAGGGGCTGCTGCAGGCGGAGGGGCTGCTGCAGGCGGA
GGGGCTGCTGCAGGCGGAGGGCATGCCCGCCGGCTCAGGCCCGCTCACCA
CCGACTCGGACGCCACCACGGTCGTCACCAACGCCGTCACCACCTCCGCG
GAGGACCGCCGCCGCCACCTGCTCAGCGACAGCGCGACGGTCGTGGAGCA
CATGTCGCCGCCCGTATCGCCGTCGCCGCGCGCGGCCGGCAGCAGCGGCG
GCGCCGCGGCGGCGCTGGCGGCGGCTGTCGCGACCGCGTCCGCCGGCGCC
GCGGCGCTCGATGGCGGCAGCAGCGTCGGCAGCGGCGGCGCTGGCGCCGG
CGCCGGCGGCGCGCTCAGCAGCGACGACGAGGAGGACGGCATGCGCACGC
CGCCGTCGTCGCCGGATGATGGCGAGGAGCTGGTCGGCGAGATGCGTGGG
CTCACCCTGCAAGGCGTGTCGGAGCTGACGCGCACGCCCCACAAGTACGG
CACCGGCATTGGCAAGCACGACGTGGTGCCGCTGCCGCCGCGGCCCACCT
TCGGCGCCGCCCCCGTCAGCTCCATCGCCAAGAGCCGCGACAACAGCCCC
ACCGCCGCCGCCAACGCCGCCAAGGCGCCTGCCTTTGTGGGCACCGCATC
CAGCGGCAGCGGCGGCGACGCGTCGCGCTAG
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