mRNA_1663 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158018
Unique NamemRNA_1663
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158018 vs. uniprot
Match: A0A835YTV5_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTV5_9STRA)

HSP 1 Score: 144 bits (363), Expect = 7.710e-44
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 MTRAKLEVLFDRPVEQAARALGVSSTIIKRLCRRHGIPKWPYRQLLRIGELRVDAFLTSRPCSPTASRPF 210
            MTRAKLEVLFDRPVEQAARALGVSSTIIKRLCRRHGIPKWPYRQLLRIGELRVDAFLTSRPCSPTASRPF
Sbjct:    1 MTRAKLEVLFDRPVEQAARALGVSSTIIKRLCRRHGIPKWPYRQLLRIGELRVDAFLTSRPCSPTASRPF 70
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BLAST of jgi.p|Trimin1|158018 vs. uniprot
Match: A0A835YN33_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN33_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.350e-21
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 MTRAKLEVLFDRPVEQAARALGVSSTIIKRLCRRHGIPKWPYRQLLRI 144
            MTRAKLE LFDRPVE AARALGVSSTIIKRLCRRHGIPKWPYRQLLR+
Sbjct:   41 MTRAKLEALFDRPVEHAARALGVSSTIIKRLCRRHGIPKWPYRQLLRL 88
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BLAST of jgi.p|Trimin1|158018 vs. uniprot
Match: A0A835YUV9_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.260e-14
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 MTRAKLEVLFDRPVEQAARALGVSSTIIKRLCRRHGIPKWPYRQLLRI 144
            M R  LE LF+RPV +AA+ LGVS+TI+KRLCRR+GI KWP+R L+R+
Sbjct:    4 MKRETLESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVRV 51
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BLAST of jgi.p|Trimin1|158018 vs. uniprot
Match: A0A2P6VJV8_9CHLO (RWP-RK domain-containing (ISS) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VJV8_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 5.960e-10
Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:    1 MTRAKLEVLFDRPVEQAARALGVSSTIIKRLCRRHGIPKWPYRQLLRIGELR----VDAFLTSRPCSPTAS 201
            +T A +E  F  P E+A   LGV  TI+KRLCR+ GI +WPYR LL+ G+ +       F  S PCSP  +
Sbjct:  275 ITYADVEACFALPTEKACVKLGVGLTILKRLCRKFGIQRWPYRSLLKAGKAQRVPNTPTFSDSVPCSPVGA 345
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BLAST of jgi.p|Trimin1|158018 vs. uniprot
Match: A0A2P6VNE1_9CHLO (ABC(ATP-binding) family transporter: iron compound n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VNE1_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 6.050e-10
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 MTRAKLEVLFDRPVEQAARALGVSSTIIKRLCRRHGIPKWPYRQLLRIGELRVDA 165
            +T+ ++E+ +  P E+A+R LG+  TI+KR+CRR GI KWPYRQL R G+L   A
Sbjct:  302 ITKEEIELYYHLPCEEASRQLGIGLTILKRICRRLGIDKWPYRQLKRAGKLGEGA 356
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BLAST of jgi.p|Trimin1|158018 vs. uniprot
Match: A0A2P6U414_CHLSO (RWP-RK domain-containing (ISS) n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U414_CHLSO)

HSP 1 Score: 61.2 bits (147), Expect = 2.810e-9
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 MTRAKLEVLFDRPVEQAARALGVSSTIIKRLCRRHGIPKWPYRQLLRIGELRVDA 165
            +T A +E  F  P E+A   LGV  TI+KRLCR+HGI +WPYR LL+ G+ +  A
Sbjct:   23 ITLADIEACFTLPTEKACVKLGVGLTILKRLCRKHGIQRWPYRSLLKAGKAQRHA 77
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BLAST of jgi.p|Trimin1|158018 vs. uniprot
Match: A0A453EL95_AEGTS (RWP-RK domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453EL95_AEGTS)

HSP 1 Score: 56.6 bits (135), Expect = 1.300e-8
Identity = 23/58 (39.66%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   13 KLEVLFDRPVEQAARALGVSSTIIKRLCRRHGIPKWPYRQLLRIGELRVDAFLTSRPC 186
            ++  LF  P+ +AA  LGV ++++KR+CR HGI +WPYR++  +  LR+   ++  PC
Sbjct:   48 EISKLFSLPIAEAASILGVCTSVLKRICRTHGIVRWPYRKVKSLSVLRLVREISFVPC 105
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BLAST of jgi.p|Trimin1|158018 vs. uniprot
Match: K8YW24_NANGC (Rwp-rk domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YW24_NANGC)

HSP 1 Score: 59.3 bits (142), Expect = 1.350e-8
Identity = 24/41 (58.54%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   13 KLEVLFDRPVEQAARALGVSSTIIKRLCRRHGIPKWPYRQL 135
            +L   FDRP+E AARALG+ ST++K++CRR+ I +WPYRQ+
Sbjct:  331 ELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQV 371
[Close]
BLAST of jgi.p|Trimin1|158018 vs. uniprot
Match: A0A250X3F0_9CHLO (RWP-RK domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X3F0_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 1.370e-8
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 MTRAKLEVLFDRPVEQAARALGVSSTIIKRLCRRHGIPKWPYRQLLRIGELRVDAFLTSRP 183
            +TR +L   F  P E+AAR LG+  T++KR+CR+ G+P+WPYR+L  +  L  +    S P
Sbjct:  107 ITREELSECFGMPSEEAARRLGIGLTVLKRICRKFGVPRWPYRKLKSLDRLISNVEAGSPP 167
[Close]
BLAST of jgi.p|Trimin1|158018 vs. uniprot
Match: D8LJT6_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT6_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.850e-8
Identity = 24/50 (48.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 MTRAKLEVLFDRPVEQAARALGVSSTIIKRLCRRHGIPKWPYRQLLRIGE 150
            +T   LE  F+ P+E+ ++ +GVS+TIIKRLCR++GI +WPYRQ+  + +
Sbjct:  106 VTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNK 155
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158018 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YTV5_9STRA7.710e-44100.00RWP-RK domain-containing protein n=1 Tax=Tribonema... [more]
A0A835YN33_9STRA6.350e-2193.75RWP-RK domain-containing protein n=1 Tax=Tribonema... [more]
A0A835YUV9_9STRA3.260e-1464.58RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A2P6VJV8_9CHLO5.960e-1045.07RWP-RK domain-containing (ISS) n=1 Tax=Micractiniu... [more]
A0A2P6VNE1_9CHLO6.050e-1050.91ABC(ATP-binding) family transporter: iron compound... [more]
A0A2P6U414_CHLSO2.810e-950.91RWP-RK domain-containing (ISS) n=1 Tax=Chlorella s... [more]
A0A453EL95_AEGTS1.300e-839.66RWP-RK domain-containing protein n=1 Tax=Aegilops ... [more]
K8YW24_NANGC1.350e-858.54Rwp-rk domain-containing protein n=1 Tax=Nannochlo... [more]
A0A250X3F0_9CHLO1.370e-842.62RWP-RK domain-containing protein n=1 Tax=Chlamydom... [more]
D8LJT6_ECTSI1.850e-848.00Putative NIN-like transcription factor n=1 Tax=Ect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:1186942..1187154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158018|e_gw1.4.99.1
DescriptionRWP-RK domain
COG categoryK
Max annot lvl35493|Streptophyta
EggNOG OGs2CMF0@1|root,2QQ6H@2759|Eukaryota,37M05@33090|Viridiplantae,3GXRC@35493|Streptophyta,3KT8Q@4447|Liliopsida,3IFFY@38820|Poales
Evalue1.97e-08
Seed ortholog4533.OB02G12720.1
Hectar predicted targeting categoryother localisation
TranscriptId158340
TrackFilteredModels1
ProteinId158018
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158018gene_1663Tribonema minus UTEX_B_3156 geneContig_4 1186942..1187154 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1663_1exon_1663_1Tribonema minus UTEX_B_3156 exonContig_4 1186942..1187154 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1663CDS_1663Tribonema minus UTEX_B_3156 CDSContig_4 1186942..1187154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158018Trimin1|158018|e_gw1.4.99.1Tribonema minus UTEX_B_3156 polypeptideContig_4 1186942..1187154 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1663 ID=mRNA_1663|Name=jgi.p|Trimin1|158018|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_4:1186942..1187154- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACACGAGCCAAACTTGAAGTGCTGTTCGACAGGCCGGTGGAGCAGGC
AGCGCGTGCCCTGGGCGTGTCTAGCACCATCATCAAGAGGCTGTGCAGAA
GGCACGGTATCCCGAAGTGGCCCTATCGCCAGCTGCTGAGGATAGGTGAG
CTTCGTGTGGACGCATTTCTAACAAGCAGGCCTTGCAGCCCAACTGCCAG
CCGGCCGTTTTAA
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protein sequence of jgi.p|Trimin1|158018

>Trimin1|158018|e_gw1.4.99.1 ID=Trimin1|158018|e_gw1.4.99.1|Name=jgi.p|Trimin1|158018|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=71bp
MTRAKLEVLFDRPVEQAARALGVSSTIIKRLCRRHGIPKWPYRQLLRIGE
LRVDAFLTSRPCSPTASRPF*
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mRNA from alignment at Contig_4:1186942..1187154-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1663 ID=mRNA_1663|Name=jgi.p|Trimin1|158018|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_4:1186942..1187154- (Tribonema minus UTEX_B_3156 )
ATGACACGAGCCAAACTTGAAGTGCTGTTCGACAGGCCGGTGGAGCAGGC
AGCGCGTGCCCTGGGCGTGTCTAGCACCATCATCAAGAGGCTGTGCAGAA
GGCACGGTATCCCGAAGTGGCCCTATCGCCAGCTGCTGAGGATAGGTGAG
CTTCGTGTGGACGCATTTCTAACAAGCAGGCCTTGCAGCCCAACTGCCAG
CCGGCCGTTTTAA
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Coding sequence (CDS) from alignment at Contig_4:1186942..1187154-

>mRNA_1663 ID=mRNA_1663|Name=jgi.p|Trimin1|158018|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=213bp|location=Sequence derived from alignment at Contig_4:1186942..1187154- (Tribonema minus UTEX_B_3156 )
ATGACACGAGCCAAACTTGAAGTGCTGTTCGACAGGCCGGTGGAGCAGGC
AGCGCGTGCCCTGGGCGTGTCTAGCACCATCATCAAGAGGCTGTGCAGAA
GGCACGGTATCCCGAAGTGGCCCTATCGCCAGCTGCTGAGGATAGGTGAG
CTTCGTGTGGACGCATTTCTAACAAGCAGGCCTTGCAGCCCAACTGCCAG
CCGGCCGTTTTAA
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