mRNA_1781 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|138019
Unique NamemRNA_1781
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|138019 vs. uniprot
Match: A0A836CDA1_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDA1_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.370e-32
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 MSRASMRGHGPVATYLIKCGANINAADKWGWVPLHWACEGGRVDLVEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAPADDDNKRP 297
            MSRASMRGHGPVATYLIKCGANINAADKWGWVPLHWACEGGRVDLVEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAPADDDNKRP
Sbjct:    1 MSRASMRGHGPVATYLIKCGANINAADKWGWVPLHWACEGGRVDLVEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAPADDDNKRP 99
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138019 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CDA1_9STRA5.370e-32100.00Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:2042781..2043619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|138019|gw1.4.180.1
Descriptionprotein ubiquitination
COG categoryI
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Evalue0.000187
Seed ortholog36331.EPrPI00000019023
Hectar predicted targeting categoryother localisation
TranscriptId138341
TrackFilteredModels1
ProteinId138019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138019gene_1781Tribonema minus UTEX_B_3156 geneContig_4 2042781..2043619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138019Trimin1|138019|gw1.4.180.1Tribonema minus UTEX_B_3156 polypeptideContig_4 2042781..2043619 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1781_2exon_1781_2Tribonema minus UTEX_B_3156 exonContig_4 2042781..2042894 -
exon_1781_1exon_1781_1Tribonema minus UTEX_B_3156 exonContig_4 2043437..2043619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1781CDS_1781Tribonema minus UTEX_B_3156 CDSContig_4 2043437..2043619 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1781 ID=mRNA_1781|Name=jgi.p|Trimin1|138019|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=297bp|location=Sequence derived from alignment at Contig_4:2042781..2043619- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAGGGCAAGCATGCGCGGCCATGGTCCCGTGGCAACGTACCTCAT
CAAGTGCGGCGCCAATATCAACGCCGCCGACAAGTGGGGCTGGGTGCCGC
TGCACTGGGCCTGTGAGGGGGGGCGCGTGGACCTGGTGGAGGTACTGGTG
CAATCAGGGGCCAACATTGAGGCTCGAACCAAGACGAACCGCACCCCCCT
GCACATCGCGGCGCACTACGGTCACGCCGATGTCGTGCGCCTCCTGCTGC
GCCGCGGCGCCGGTGCCGCCCCTGCCGACGACGACAACAAGCGCCCC
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protein sequence of jgi.p|Trimin1|138019

>Trimin1|138019|gw1.4.180.1 ID=Trimin1|138019|gw1.4.180.1|Name=jgi.p|Trimin1|138019|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=99bp
MSRASMRGHGPVATYLIKCGANINAADKWGWVPLHWACEGGRVDLVEVLV
QSGANIEARTKTNRTPLHIAAHYGHADVVRLLLRRGAGAAPADDDNKRP
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mRNA from alignment at Contig_4:2042781..2043619-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1781 ID=mRNA_1781|Name=jgi.p|Trimin1|138019|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=839bp|location=Sequence derived from alignment at Contig_4:2042781..2043619- (Tribonema minus UTEX_B_3156 )
ATGTCCAGGGCAAGCATGCGCGGCCATGGTCCCGTGGCAACGTACCTCAT
CAAGTGCGGCGCCAATATCAACGCCGCCGACAAGTGGGGCTGGGTGCCGC
TGCACTGGGCCTGTGAGGGGGGGCGCGTGGACCTGGTGGAGGTACTGGTG
CAATCAGGGGCCAACATTGAGGCTCGAACCAAGGTGCGTCTGACGCTCAA
TGTATGAACTGGGGGGGGGGGGGGGGGGGGGAGTGAGGGGGCTCGGCATC
TGTAGAGTGGTTTGGTCAGGATGAAGCCTGCTCTTATCTTATTGGACACG
TTGCTGGTTCACAATGGAGCTGGTTTGAAACGACAAGTATGACGGAAATG
TCAGGAGTATACAAGCTCTCAATCCACTACAGGAAGCTTGCAGGGTTCAT
TTTATGTGGCAAGTGTTTCAACAAATAGCTCAATCTGCTGTGCCTCCAAT
GGTTCGCGTTCTGCATTAATGAATGAGTGTGAGTTCTTCAGCACGAGCCC
AAGTCACCACGCAAAACACTCGTCCTGCCAGTCTACTTACTACTGTACAC
CAATGCAACCACTACCAGTCACCAGCTGGAACCACTGCCAATCTGCAAGC
AGTGATGACACATTCACAATGAAAGCAGTACCAGCCTGTACAGATATCCC
CAGCATTGCACTGGAAAAAGACTTGCGCACGTCTCATGCGCCCCCCTCCC
GTCCCCACCCCTCCTTCCCCACCAGACGAACCGCACCCCCCTGCACATCG
CGGCGCACTACGGTCACGCCGATGTCGTGCGCCTCCTGCTGCGCCGCGGC
GCCGGTGCCGCCCCTGCCGACGACGACAACAAGCGCCCC
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Coding sequence (CDS) from alignment at Contig_4:2042781..2043619-

>mRNA_1781 ID=mRNA_1781|Name=jgi.p|Trimin1|138019|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=297bp|location=Sequence derived from alignment at Contig_4:2042781..2043619- (Tribonema minus UTEX_B_3156 )
ATGTCCAGGGCAAGCATGCGCGGCCATGGTCCCGTGGCAACGTACCTCAT
CAAGTGCGGCGCCAATATCAACGCCGCCGACAAGTGGGGCTGGGTGCCGC
TGCACTGGGCCTGTGAGGGGGGGCGCGTGGACCTGGTGGAGGTACTGGTG
CAATCAGGGGCCAACATTGAGGCTCGAACCAAGACGAACCGCACCCCCCT
GCACATCGCGGCGCACTACGGTCACGCCGATGTCGTGCGCCTCCTGCTGC
GCCGCGGCGCCGGTGCCGCCCCTGCCGACGACGACAACAAGCGCCCC
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