mRNA_1731 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|64619 vs. uniprot
Match: A0A835YXR2_9STRA (Triosephosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXR2_9STRA) HSP 1 Score: 571 bits (1471), Expect = 6.880e-205 Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 1
Query: 37 MKLALYACCVGPALAFVARPPASSTSTGARATSTQLDARKPLIAGNWKENPCTVQEAEALASEVAEATKQAGDVGVVVIPPYPFLVPVQNAASGALMIGGQNCYFEEKGAYTGAVSTAMLSSVGCTYVLCGHSERRTVFRNDDNAINRKLRAVLDHNMMPILCIGESKEEYDAGLNKAVCAIQLSKDLKGVTGEEMKRIVVAYEPVWAIGTGLTATPEIAQSVHDYIRGYLAKMYSREVADEVIIQYGGSVTPDSVDALMAMPDIDGALVGGASLDGAKFGRIINYKKA 903
MKLALYACCVGPALAFVARPPASSTSTGARATSTQLDARKPLIAGNWKENPCTVQEAEALASEVAEATKQAGDVGVVVIPPYPFLVPVQNAASGALMIGGQNCYFEEKGAYTGAVSTAMLSSVGCTYVLCGHSERRTVFRNDDNAINRKLRAVLDHNMMPILCIGESKEEYDAGLNKAVCAIQLSKDLKGVTGEEMKRIVVAYEPVWAIGTGLTATPEIAQSVHDYIRGYLAKMYSREVADEVIIQYGGSVTPDSVDALMAMPDIDGALVGGASLDGAKFGRIINYKKA
Sbjct: 1 MKLALYACCVGPALAFVARPPASSTSTGARATSTQLDARKPLIAGNWKENPCTVQEAEALASEVAEATKQAGDVGVVVIPPYPFLVPVQNAASGALMIGGQNCYFEEKGAYTGAVSTAMLSSVGCTYVLCGHSERRTVFRNDDNAINRKLRAVLDHNMMPILCIGESKEEYDAGLNKAVCAIQLSKDLKGVTGEEMKRIVVAYEPVWAIGTGLTATPEIAQSVHDYIRGYLAKMYSREVADEVIIQYGGSVTPDSVDALMAMPDIDGALVGGASLDGAKFGRIINYKKA 289
BLAST of jgi.p|Trimin1|64619 vs. uniprot
Match: A0A7S4D8V7_HETAK (Triosephosphate isomerase n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8V7_HETAK) HSP 1 Score: 335 bits (859), Expect = 5.080e-111 Identity = 166/255 (65.10%), Postives = 204/255 (80.00%), Query Frame = 1
Query: 142 LDARKPLIAGNWKENPCTVQEAEALASEVAEATKQAGDVGVVVIPPYPFLVPVQNAASGA-LMIGGQNCYFEEKGAYTGAVSTAMLSSVGCTYVLCGHSERRTVFRNDDNAINRKLRAVLDHNMMPILCIGESKEEYDAGLNKAVCAIQLSKDLKGVTGEEMKRIVVAYEPVWAIGTGLTATPEIAQSVHDYIRGYLAKMYSREVADEVIIQYGGSVTPDSVDALMAMPDIDGALVGGASLDGAKFGRIINYKKA 903
L AR+P++AGNWK NPCT++EA ALA+ VA A D VV+ P +PFLVPV G+ + +G QNCY E+KGA+TG+VST M+ S+G YVL GHSERRT+FR+DD AINRK++ VL M PILCIGE K+E++ GL + VCA+QL+KDL+GVT EEM+R+V+AYEPVWAIGTGLTATPEIAQ VH +IRG++A Y + VADEV IQYGGSVTP++VD LMA PDIDGALVGGASLD KFGRI+N+K A
Sbjct: 84 LMARQPIMAGNWKMNPCTLEEAAALAAGVA-ANPIENDAEVVLFPSHPFLVPVMEKIDGSQVKLGAQNCYTEDKGAFTGSVSTCMVKSIGVEYVLAGHSERRTLFRDDDGAINRKVKKVLSAGMKPILCIGELKDEFEEGLVEQVCALQLAKDLRGVTAEEMRRVVIAYEPVWAIGTGLTATPEIAQKVHAFIRGWIAGKYGKAVADEVRIQYGGSVTPETVDELMAQPDIDGALVGGASLDAEKFGRIMNFKTA 337
BLAST of jgi.p|Trimin1|64619 vs. uniprot
Match: A0A835ZJI0_9STRA (Triosephosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJI0_9STRA) HSP 1 Score: 321 bits (823), Expect = 7.920e-107 Identity = 161/251 (64.14%), Postives = 193/251 (76.89%), Query Frame = 1
Query: 148 ARKPLIAGNWKENPCTVQEAEALASEVAEATKQAGDVGVVVIPPYPFLVPVQNAASGA-LMIGGQNCYFEEKGAYTGAVSTAMLSSVGCTYVLCGHSERRTVFRNDDNAINRKLRAVLDHNMMPILCIGESKEEYDAGLNKAVCAIQLSKDLKGVTGEEMKRIVVAYEPVWAIGTGLTATPEIAQSVHDYIRGYLAKMYSREVADEVIIQYGGSVTPDSVDALMAMPDIDGALVGGASLDGAKFGRIINYK 897
AR P+I GNWK NP + A LA++VA TK V V +IPPYPF+ PV++A G+ + +G QN + E+KGA+TGAVST ML SVGC YVLCGHSERRT+F+ D+ IN K+ VL NM PILCIGESKEEY++GLNK VCA+QL K+L GVT E+MK +V+AYEPVWAIGTGL ATPE+AQSVH YIR +LA Y + VAD+V IQYGGSVTP+SVD LMA PDIDGALVGGASL KF RI ++
Sbjct: 3 ARTPIITGNWKMNPGDMASAVQLAADVAAQTKGLEGVEVGIIPPYPFVPPVRDALKGSGITVGAQNAFVEDKGAFTGAVSTTMLLSVGCEYVLCGHSERRTIFKEDNALINSKVLKVLSKNMRPILCIGESKEEYESGLNKEVCAVQLGKNLAGVTAEQMKDVVIAYEPVWAIGTGLVATPEVAQSVHAYIRSWLAGKYGQAVADDVRIQYGGSVTPESVDDLMACPDIDGALVGGASLVADKFARICRFQ 253
BLAST of jgi.p|Trimin1|64619 vs. uniprot
Match: A0A7S2XYZ2_9STRA (Triosephosphate isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYZ2_9STRA) HSP 1 Score: 322 bits (825), Expect = 1.390e-106 Identity = 171/295 (57.97%), Postives = 211/295 (71.53%), Query Frame = 1
Query: 37 MKLALYACCVGPAL-----AFVARPPASSTSTGARATSTQLDA--RKPLIAGNWKENPCTVQEAEALASEVAEATKQAGDVGVVVIPPYPFLVPVQNAASGALM-IGGQNCYFEEKGAYTGAVSTAMLSSVGCTYVLCGHSERRTVFRNDDNAINRKLRAVLDHNMMPILCIGESKEEYDAGLNKAVCAIQLSKDLKGVTGEEMKRIVVAYEPVWAIGTGLTATPEIAQSVHDYIRGYLAKMYSREVADEVIIQYGGSVTPDSVDALMAMPDIDGALVGGASLDGAKFGRIINYK 897
MK + AC G A+ AF P + T A +STQL R P I GNWK NP T++EA+ALA V + V + P+PFL PV G+ + GG+ +FE+KGAYTGAVS +ML +VGC YVL GHSERR +F+ DD+AI+RK+R +LD M P+LCIGES+EEY+A LNK +C IQL+KDL GV+ EEMK + +AYEPVWAIGTGLTATPEIAQ+VH YIR ++A Y +EVADEV IQYGGSVTP++VD LMA PDIDGALVGGASLD AKF RI+N++
Sbjct: 1 MKGLVLACLTGAAVISTVSAFFGSP---LSYTSAMRSSTQLSMADRVPFICGNWKMNPTTLEEAKALAEGVKSGCDGSA-AEVAIFTPHPFLYPVGKILDGSTVKYGGETVFFEDKGAYTGAVSASMLKTVGCEYVLAGHSERRVLFKTDDSAISRKVRKILDSGMKPVLCIGESREEYEANLNKEICCIQLAKDLAGVSAEEMKLVTIAYEPVWAIGTGLTATPEIAQNVHAYIRSWVAGKYGQEVADEVRIQYGGSVTPETVDELMACPDIDGALVGGASLDAAKFSRIVNFE 291
BLAST of jgi.p|Trimin1|64619 vs. uniprot
Match: A0A7S2UU88_9STRA (Triosephosphate isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU88_9STRA) HSP 1 Score: 318 bits (815), Expect = 9.190e-106 Identity = 161/244 (65.98%), Postives = 189/244 (77.46%), Query Frame = 1
Query: 169 GNWKENPCTVQEAEALASEVAEATKQAGDVGVVVIPPYPFLVPVQNAASGA-LMIGGQNCYFEEKGAYTGAVSTAMLSSVGCTYVLCGHSERRTVFRNDDNAINRKLRAVLDHNMMPILCIGESKEEYDAGLNKAVCAIQLSKDLKGVTGEEMKRIVVAYEPVWAIGTGLTATPEIAQSVHDYIRGYLAKMYSREVADEVIIQYGGSVTPDSVDALMAMPDIDGALVGGASLDGAKFGRIINYK 897
GNWK NP T+ EA ALA V E K V+VIPP PFLVPV + G+ + +GGQN +FE+KGAYTGAVST ML SVG YVL GHSERRT+FR+DD++INRK+R +L+ + PILCIGE+KEEYD GL + VC +Q+SKDL VT E+MK IV+AYEPVWAIGTGLTATPEIAQSVH YIR +AK + EVA+ V IQYGGSVTP++VD LMA PDIDGALVGGASL KFGRI Y+
Sbjct: 1 GNWKMNPETLDEAVALAKGVVEQVKDGASGEVIVIPPSPFLVPVADIIKGSGVQLGGQNAFFEDKGAYTGAVSTCMLKSVGAKYVLAGHSERRTLFRDDDSSINRKVRKILEAGLKPILCIGETKEEYDQGLVELVCGLQISKDLADVTAEQMKDIVIAYEPVWAIGTGLTATPEIAQSVHKYIRSCIAKKFGDEVAEGVRIQYGGSVTPETVDELMACPDIDGALVGGASLVADKFGRICKYQ 244
BLAST of jgi.p|Trimin1|64619 vs. uniprot
Match: A0A4D9CPZ8_9STRA (Triosephosphate isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CPZ8_9STRA) HSP 1 Score: 309 bits (792), Expect = 1.950e-101 Identity = 151/253 (59.68%), Postives = 191/253 (75.49%), Query Frame = 1
Query: 142 LDARKPLIAGNWKENPCTVQEAEALASEVAEATKQAGDVGVVVIPPYPFLVPVQNAASGA-LMIGGQNCYFEEKGAYTGAVSTAMLSSVGCTYVLCGHSERRTVFRNDDNAINRKLRAVLDHNMMPILCIGESKEEYDAGLNKAVCAIQLSKDLKGVTGEEMKRIVVAYEPVWAIGTGLTATPEIAQSVHDYIRGYLAKMYSREVADEVIIQYGGSVTPDSVDALMAMPDIDGALVGGASLDGAKFGRIINYK 897
+ R+P IAGNWKENP T++ A LA V+ A+ A +V V V+ P+PFLVPV+ G+ ++IG Q+ Y E+KGAYTGA S M+ SVG +VLCGHSERR +F + D +N KL+ VL + ILCIGE+K+EY+ G+NK +C +QL+K LKGVT E+M+ + +AYEPVWAIGTGLTATPEIAQ VH IR L + Y + VAD+V+IQYGGSVTP++VD LMAMPDIDGALVGGASL G KF RIIN+K
Sbjct: 50 MSGRRPFIAGNWKENPDTLEAAIDLAKVVSTASSSASNVDVAVVVPFPFLVPVKETLKGSNVLIGAQDLYTEDKGAYTGATSLPMIKSVGAQWVLCGHSERRALFGDTDETVNAKLKKVLAAGLKAILCIGETKDEYELGVNKLICGLQLAKGLKGVTKEQMENVAIAYEPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVIQYGGSVTPETVDELMAMPDIDGALVGGASLVGEKFARIINFK 302
BLAST of jgi.p|Trimin1|64619 vs. uniprot
Match: A0A6S9FXW6_HETAK (Triosephosphate isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FXW6_HETAK) HSP 1 Score: 303 bits (776), Expect = 4.670e-99 Identity = 146/254 (57.48%), Postives = 194/254 (76.38%), Query Frame = 1
Query: 145 DARKPLIAGNWKENPCTVQEAEALASEVAEATKQAGDVGVVVIPPYPFLVPVQNAASGA-LMIGGQNCYFEEKGAYTGAVSTAMLSSVGCTYVLCGHSERRTVFRNDDNAINRKLRAVLDHNMMPILCIGESKEEYDAGLNKAVCAIQLSKDLKGVTGEEMKRIVVAYEPVWAIGTGLTATPEIAQSVHDYIRGYLAKMYSREVADEVIIQYGGSVTPDSVDALMAMPDIDGALVGGASLDGAKFGRIINYKKA 903
D R+P IAGNWK NP +++EA+ LA++VAE TK+ +V + V P+PF+ PV G+ +++G + + E+KGAYTGAVS M+ S+G +VL GHSERR +F DD+++NR++ +L+ M ILCIGES+ EYDAGLN+ +C +QL+KDLK VT E+MK +V+AYEPVWAIGTGLTATPEIAQ+VH IR ++AK + ++A E IQYGGSVTP++VD LMA PDIDGALVGGASLD KF RI N++ A
Sbjct: 43 DGRRPFIAGNWKMNPTSLEEAKTLAAKVAELTKENTEVEMAVFAPHPFIYPVAKELEGSNVVVGAETIFTEDKGAYTGAVSATMVKSMGGKWVLAGHSERRVLFNTDDDSVNRQVLKILNRGMGCILCIGESQAEYDAGLNQEICTVQLAKDLKDVTPEQMKNVVIAYEPVWAIGTGLTATPEIAQNVHASIRAWVAKKFGEQIAKETRIQYGGSVTPETVDELMACPDIDGALVGGASLDAEKFARICNFEMA 296
BLAST of jgi.p|Trimin1|64619 vs. uniprot
Match: L1ILQ4_GUITC (Triosephosphate isomerase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1ILQ4_GUITC) HSP 1 Score: 296 bits (758), Expect = 5.130e-97 Identity = 145/253 (57.31%), Postives = 186/253 (73.52%), Query Frame = 1
Query: 142 LDARKPLIAGNWKENPCTVQEAEALASEVAEATKQAGDVGVVVIPPYPFLVPVQ-NAASGALMIGGQNCYFEEKGAYTGAVSTAMLSSVGCTYVLCGHSERRTVFRNDDNAINRKLRAVLDHNMMPILCIGESKEEYDAGLNKAVCAIQLSKDLKGVTGEEMKRIVVAYEPVWAIGTGLTATPEIAQSVHDYIRGYLAKMYSREVADEVIIQYGGSVTPDSVDALMAMPDIDGALVGGASLDGAKFGRIINYK 897
+ AR P IAGNWK NP +V+EA +LA +A+ K + V + P+PFL + + G + +G Q CYFE+KGAYTGA ST+M+ SVG +V+ GHSERRTVF D +N+ + VL NM+PILC+GE+KEEY++GLN +CAIQL+K LKGV+ E+ K++ +AYEPVWAIGTGL +AQ VH +IRG+LA MY +E AD + IQYGGSVTPDSVD LM+ PDIDG LVGGASLD AKF RI+N+K
Sbjct: 1 MAARVPFIAGNWKMNPTSVEEAISLAKAIADG-KGSSKAQVAICTPHPFLAACKPHLDKGGIDLGAQACYFEQKGAYTGATSTSMIRSVGAKHVIVGHSERRTVFHQTDEMVNQIIHKVLADNMLPILCVGETKEEYESGLNTQICAIQLAKGLKGVSKEDAKKVTIAYEPVWAIGTGLVCDASVAQDVHKFIRGWLANMYDQETADTIRIQYGGSVTPDSVDELMSKPDIDGCLVGGASLDPAKFTRIMNFK 252
BLAST of jgi.p|Trimin1|64619 vs. uniprot
Match: A0A6S8WKX7_9STRA (Triosephosphate isomerase n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8WKX7_9STRA) HSP 1 Score: 297 bits (761), Expect = 1.380e-96 Identity = 158/283 (55.83%), Postives = 199/283 (70.32%), Query Frame = 1
Query: 76 LAFVARPPASSTSTGARATSTQLDARKPLIAGNWKENPCTVQEAEALASEVAE-------ATKQAGD-VGVVVIPPYPFLVPVQNAASGA-LMIGGQNCYFE-EKGAYTGAVSTAMLSSVGCTYVLCGHSERRTVFRNDDNAINRKLRAVLDHNMMPILCIGESKEEYDAGLNKAVCAIQLSKDLKGVTGEEMKRIVVAYEPVWAIGTGLTATPEIAQSVHDYIRGYLAKMYSREVADEVIIQYGGSVTPDSVDALMAMPDIDGALVGGASLDGAKFGRIINY 894
LA P A+ T A T+TQL AR+P+IAGNWK NP ++QEA+ LA VA A+ A D VVV PP+PF+ V + +G + +G Q+ + E GAYTGAVS +M++S+GC YVLCGHSERRTVF++DD AIN+K+ V++ M P+LCIGE++EEYDAGL VC +QL+KDL GV+ MK +V+AYEPVWAIGTG ++AQ+VH IR YLA++Y R AD V IQYGGSVTP+SVD LMA PDIDG LVGGASL KF RI N+
Sbjct: 28 LALALAPAAAFAPTAAPRTTTQLHARQPIIAGNWKLNPSSIQEADGLAKGVASLLGDETCASSSAADCTEVVVFPPFPFISSVVDDLAGVGVGVGAQSIFHTAESGAYTGAVSASMVTSLGCQYVLCGHSERRTVFKDDDEAINKKVLKVIEDGMRPVLCIGETEEEYDAGLCADVCKLQLAKDLAGVSAAAMKDVVIAYEPVWAIGTGKVCPCDVAQTVHKTIRDYLAELYDRSTADAVRIQYGGSVTPESVDELMAQPDIDGCLVGGASLVAEKFARICNF 310
BLAST of jgi.p|Trimin1|64619 vs. uniprot
Match: A0A7S4A1D2_9STRA (Triosephosphate isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A1D2_9STRA) HSP 1 Score: 296 bits (758), Expect = 1.410e-96 Identity = 146/255 (57.25%), Postives = 189/255 (74.12%), Query Frame = 1
Query: 133 STQLDARKPLIAGNWKENPCTVQEAEALASEVAEATKQAGDVGVVVIPPYPFLVPVQNAASGA-LMIGGQNCYFEEKGAYTGAVSTAMLSSVGCTYVLCGHSERRTVFRNDDNAINRKLRAVLDHNMMPILCIGESKEEYDAGLNKAVCAIQLSKDLKGVTGEEMKRIVVAYEPVWAIGTGLTATPEIAQSVHDYIRGYLAKMYSREVADEVIIQYGGSVTPDSVDALMAMPDIDGALVGGASLDGAKFGRIINY 894
ST L AR+P+ GNWK NP ++ +A LA VA A + G+V PPYPF+ PV L +G Q+ +FE+KGAYTGAVS +M+ S+G YVL GHSERRT+F+++D AIN+K+ +++ M+P+LCIGE+KEE+DA L ++VCAIQL+KDL GV+ ++K +++AYEPVWAIGTGL E AQ VH ++R LA MY + AD V IQYGGSVTPDSVD LM+MPDIDG LVGGASLDG KFGRI+N+
Sbjct: 28 STALAARQPITGGNWKMNPTSLDDARELAKSVAAAAGSSAAEGIV-FPPYPFIGPVGEIIKDTKLNLGSQSIFFEDKGAYTGAVSASMVKSLGVKYVLAGHSERRTLFKDNDAAINKKVLKIIEGGMIPVLCIGETKEEFDANLCESVCAIQLAKDLAGVSAADVKTMIIAYEPVWAIGTGLVCPSETAQKVHKFLRAKLASMYDQATADAVRIQYGGSVTPDSVDELMSMPDIDGCLVGGASLDGEKFGRILNF 281 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|64619 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1731 ID=mRNA_1731|Name=jgi.p|Trimin1|64619|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1001bp|location=Sequence derived from alignment at Contig_4:1696370..1700961- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGAAAGCAATACACGGAAGCCAAATTACAGGAGCCATGAAGCTTGCCCTback to top protein sequence of jgi.p|Trimin1|64619 >Trimin1|64619|CE64618_871 ID=Trimin1|64619|CE64618_871|Name=jgi.p|Trimin1|64619|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=290bp MKLALYACCVGPALAFVARPPASSTSTGARATSTQLDARKPLIAGNWKENback to top mRNA from alignment at Contig_4:1696370..1700961- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1731 ID=mRNA_1731|Name=jgi.p|Trimin1|64619|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4592bp|location=Sequence derived from alignment at Contig_4:1696370..1700961- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_4:1696370..1700961- >mRNA_1731 ID=mRNA_1731|Name=jgi.p|Trimin1|64619|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=870bp|location=Sequence derived from alignment at Contig_4:1696370..1700961- (Tribonema minus UTEX_B_3156 )back to top |