mRNA_1643 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|64144
Unique NamemRNA_1643
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|64144 vs. uniprot
Match: A0A836CCG9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCG9_9STRA)

HSP 1 Score: 223 bits (567), Expect = 7.350e-73
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 2 
Query:   92 MCSLPACSQCCCLLSGMGIVFLTILGILFEEQPFFTNPEVYHKDGSEEAAEAVYWGAFIYFITLLMSLYGMWYSKRRSAQYNEAQFDHELAPLAASPPRPDYGGSR 409
            MCSLPACSQCCCLLSGMGIVFLTILGILFEEQPFFTNPEVYHKDGSEEAAEAVYWGAFIYFITLLMSLYGMWYSKRRSAQYNEAQFDHELAPLAASPPRPDYGGSR
Sbjct:    1 MCSLPACSQCCCLLSGMGIVFLTILGILFEEQPFFTNPEVYHKDGSEEAAEAVYWGAFIYFITLLMSLYGMWYSKRRSAQYNEAQFDHELAPLAASPPRPDYGGSR 106
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BLAST of jgi.p|Trimin1|64144 vs. uniprot
Match: D8LG89_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG89_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.450e-5
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 2 
Query:   92 MCSLPACSQCCCLLSGMGIVFLTILGILFEEQPFFTNPEVYHKDGSEEAAEAVYWGAFIYFITLLMSLYGMWYSKRR 322
            M  +  C++ C  LS  GI+FL I+GI+F++Q F+T+ EV   D    AA   Y+ A +Y + + +SL G+ Y K R
Sbjct:    1 MGGIDCCARVCIGLSIPGIIFLIIIGIMFDKQGFYTSVEV---DDPTAAASECYFAALLYVVAIGVSLGGICYDKNR 74
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|64144 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CCG9_9STRA7.350e-73100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LG89_ECTSI1.450e-538.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:1040937..1042956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|64144|CE64143_25
Hectar predicted targeting categorysignal anchor
TranscriptId64466
TrackFilteredModels1
ProteinId64144
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|64144gene_1643Tribonema minus UTEX_B_3156 geneContig_4 1040937..1042956 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1643_1exon_1643_1Tribonema minus UTEX_B_3156 exonContig_4 1040937..1041222 +
exon_1643_2exon_1643_2Tribonema minus UTEX_B_3156 exonContig_4 1042752..1042956 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_1643UTR5_1643Tribonema minus UTEX_B_3156 five_prime_UTRContig_4 1040937..1041027 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1643CDS_1643Tribonema minus UTEX_B_3156 CDSContig_4 1041028..1041222 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_1643UTR3_1643Tribonema minus UTEX_B_3156 three_prime_UTRContig_4 1042878..1042956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|64144Trimin1|64144|CE64143_25Tribonema minus UTEX_B_3156 polypeptideContig_4 1041028..1042877 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1643 ID=mRNA_1643|Name=jgi.p|Trimin1|64144|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=491bp|location=Sequence derived from alignment at Contig_4:1040937..1042956+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGAAGGCAAAGCTTTCGTGAGCACTCACGGGCAGGAGGCAGTAGCGGCT
GGAGGGGCACCAGAGCTTGCTGTCTGAAACGAGCCAAGGAGATGTGCTCG
TTGCCAGCGTGCTCGCAGTGCTGCTGCCTGTTGAGTGGCATGGGCATAGT
CTTTCTGACCATCCTGGGTATTCTTTTCGAGGAGCAGCCTTTCTTCACCA
ACCCGGAGGTCTATCACAAGGACGGGAGCGAGGAGGCGGCGGAGGCAGTG
TACTGGGGAGCCTTCATCTATTTCATCACACTGCTGATGTCCCTGTACGG
CATGTGGTACTCCAAGCGGCGCAGCGCGCAGTACAACGAGGCGCAGTTCG
ACCACGAGCTCGCGCCCCTCGCCGCGTCGCCGCCGCGGCCGGACTACGGC
GGCTCGCGATAGTGCGCCGCCGCCTCTCTACAGGGCGCTCTGTGCGCGGC
GGCTCATGTTGACGGATCTATGTACAGGGCGCTGTGTGCAT
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protein sequence of jgi.p|Trimin1|64144

>Trimin1|64144|CE64143_25 ID=Trimin1|64144|CE64143_25|Name=jgi.p|Trimin1|64144|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
MCSLPACSQCCCLLSGMGIVFLTILGILFEEQPFFTNPEVYHKDGSEEAA
EAVYWGAFIYFITLLMSLYGMWYSKRRSAQYNEAQFDHELAPLAASPPRP
DYGGSR*
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mRNA from alignment at Contig_4:1040937..1042956+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1643 ID=mRNA_1643|Name=jgi.p|Trimin1|64144|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2020bp|location=Sequence derived from alignment at Contig_4:1040937..1042956+ (Tribonema minus UTEX_B_3156 )
AAGAAGGCAAAGCTTTCGTGAGCACTCACGGGCAGGAGGCAGTAGCGGCT
GGAGGGGCACCAGAGCTTGCTGTCTGAAACGAGCCAAGGAGATGTGCTCG
TTGCCAGCGTGCTCGCAGTGCTGCTGCCTGTTGAGTGGCATGGGCATAGT
CTTTCTGACCATCCTGGGTATTCTTTTCGAGGAGCAGCCTTTCTTCACCA
ACCCGGAGGTCTATCACAAGGACGGGAGCGAGGAGGCGGCGGAGGCAGTG
TACTGGGGAGCCTTCATCTATTTCATCACACTGCTGGTGAGTGGCACATT
ACAACAGCGCTGTTGTTGGTGAATGCAGCAGCCGTGCCTGAGAGCCATCC
TGCAGGCAGCCGTTACTGCACTGCAGACACAGCAACAGTTTTTGAAGACT
ATCGCTCACAGTGCGGTTGGCGTGGCGCGGAAATCTCCTTGATTATGTCG
CAAGTTGGCGATGCTCTACACCAGACACACTTCAAGCTGGTGCTGTAGTG
TCTGTTCTGCTAGCATTGGCCAGTTTGCACAACTGCTTTTGAATAAACAG
GTGATGTTCAATTCCATTCTCAGCAGTTCGGCCATCCTGCGCAGGCGGTC
CATGTGCTTCCAGTACAGAAGCACGACGGAACTGACTTCAGTACATTGCA
TGCAAAGTGGTCATCCATCTGCAGGCAGCGGCCTGTGGTTTGCAGTGTTG
CCAATTTTTGGAGCAGGCATCAACTTGACATGTTGCATAAGACGACAGGA
GATTTTGAGCGTGATCGTGCACGCGTGTGTTGGACAAACAGTAATGCGGG
TCATTGAGTGTGTGCGCCAGCATTGCTACTTGCGATCTACAGCACCGAGG
TGCACCTGGCTTGTGTTGTAGCTGCAGCTATCAAGCAGCTTGTGTCCGGT
TCGCCAAACCATTTTGCCTGGTACGCAAAACCAGTTGTGGAGTTGCTGGT
GCCACCAGCAGTGTTCTACATGGAAACGAAGCAACAGATCGTAGTGCTCT
AGGTGACGAGGAGTGGCTAGCCGCAAGTGCCTTCCACCAATAACCGTGGC
AAGCGGTGGATTGAGTCTGCAACGAAGCACCATCAAGGCTGTTCAGTAGG
TGAAGCTGGAGCCTGCAGGGGTCGCTTGCTGACATCACTCTGTTTCACTG
GCAGCGCCAGGCAGGGCCTCCATGCGAGAACCTGCATCAACTGCTTTGGA
TCTCATGCACGCCACATCTGTGTCGGAAAGCAATAGTTGTTTCTGTGAGC
CTCCCACACGACGTCAACTTCACTAACACATGCACATGAGCTGAGCGTCC
GCCTTCGCTGTCGAGTGCAGGTGTTGAGGTGTTGGTATGCATGCGTACAC
ACATCATGTAACCCCTTTGGGGCCAGCAAAATCTGATGACAGGCGTCGCA
GAACAGTATGATAATATACAACTCGCGAGTTGCAAAGGTCGTTTAATCAC
AAAGGACGTGCTTGCGTGTATGGATGACCCAAGGCTTTGCAGCCCCTGCA
AGGGGTCCACCGCTGCACTCATACTTCGCCATGCAGGCGCCGGTCATGGT
GCCGCTGCTGGCTGTCATGTGCGCGTCTACTCATTGTAGCATCTCCGCAA
CTCTGCGGCACCCTTCACATCCCATTTGTAATTCGGCACCACACTTCCTG
GGTGCGGGGTTTCACTGCGTCAGCCTCTCATCACTGCTGCCGCGCATCGC
AAACTGTGCACACGCTTGATCGCTTTCAACCCAGCAATCGTGAAAGGCAA
TTGTGCGTATGAGTTCTGACCGTGCGCCGCCGTCTTCACACGTGCGCATG
CGACCCCCCGCGCAGATGTCCCTGTACGGCATGTGGTACTCCAAGCGGCG
CAGCGCGCAGTACAACGAGGCGCAGTTCGACCACGAGCTCGCGCCCCTCG
CCGCGTCGCCGCCGCGGCCGGACTACGGCGGCTCGCGATAGTGCGCCGCC
GCCTCTCTACAGGGCGCTCTGTGCGCGGCGGCTCATGTTGACGGATCTAT
GTACAGGGCGCTGTGTGCAT
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Coding sequence (CDS) from alignment at Contig_4:1040937..1042956+

>mRNA_1643 ID=mRNA_1643|Name=jgi.p|Trimin1|64144|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_4:1040937..1042956+ (Tribonema minus UTEX_B_3156 )
ATGTGCTCGTTGCCAGCGTGCTCGCAGTGCTGCTGCCTGTTGAGTGGCAT
GGGCATAGTCTTTCTGACCATCCTGGGTATTCTTTTCGAGGAGCAGCCTT
TCTTCACCAACCCGGAGGTCTATCACAAGGACGGGAGCGAGGAGGCGGCG
GAGGCAGTGTACTGGGGAGCCTTCATCTATTTCATCACACTGCTGATGTC
CCTGTACGGCATGTGGTACTCCAAGCGGCGCAGCGCGCAGTACAACGAGG
CGCAGTTCGACCACGAGCTCGCGCCCCTCGCCGCGTCGCCGCCGCGGCCG
GACTACGGCGGCTCGCGATAG
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