Trimin1|349244|estExt_Genemark1.C_Ctg_390090 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|349244
Unique Name	Trimin1\|349244\|estExt_Genemark1.C_Ctg_390090
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	1730

Homology

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BLAST of jgi.p|Trimin1|349244 vs. uniprot
Match: A0A835YTV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTV8_9STRA)

HSP 1 Score: 1339 bits (3466), Expect = 0.000e+0
Identity = 1729/1729 (100.00%), Postives = 1729/1729 (100.00%), Query Frame = 0

Query:    1 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 1729
            MGGVVSRFLNSWRRGDAPDQIGDNTPEEKRSGKQQKGQKKLRETPTKQSGAVKRAASPDGAGKAKKSERQQQWDERVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEARXXRXXXXXXXXXXXXXAQRAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGQQAALKAKLDHEQARALPTHSASAVKKAGGXXXXXXXXXXXXXGKPQPIVGGDSFGTRVNVMVQRAVASAASAKQKAAVKYRDALYRSGLESRLAGTRLGDVVRGADPVAALVVALLLTLAAAWSLARVFSPRNSARRGAPAHAGGGVVAGTRIRCAQQLVSRLAGTRLGEVVRGADPVAALIVALLLTLAAAWSLARACGPPLXXXXXXXXXXXXXXXXXXXXRDRSPPKRLSIQVSSKAGPTGRRRSKASRSPSPAGSPGARPXXXXXXXXXXXXXXXXXXXXVALADTPRGAASAILSAPRAAAIPAAAVGNDASDAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFTPTRPSGSRPSSPRSGLFPRMGXXXXXXXRSSGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXTPERKAGGLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMGTSSSRPASPRHGGDAPPSXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAVTSATDSAMEAAGGKESAGTGLESHDAVPSSPQAVAQEATIPAAAIPAYPVTPQAPAAALGGSAVSAMSEQIQASRKSSSSGRTLLERIHSDQAPRRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGAAHGGEDEIVDWSALRRALPKEFSVEFNEGSIGMSLVRTAADTAEVSKVVERGQAHTGGVKAGDVVSAVGDSVATSMNXXXXXXXXXXXXXXXYGTTLAFLNILGRPVTLWFQKGEDGTAAEDTEALEAIQAAFPSNENXXXXXXXXXXXXXXXXXXXXXXXEAAAQSAAMLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVDVVDVRASLSSGSRGFRAMLRSGGXXXXXXGSFGGSPHRRTGSLTAFFKGGQGEGGGGDAESPRRSMPHTPVSTSKMRRMQEVAGPDDSFDEKMFKGVLVTKYSTKGAPLPRVLFIDETQSLAWREPESSPMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGHKRARSLTLLLKGDRKAMELASLVDVIAGDEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPAVPGEIGSDALRHAAGSGTHEATLMARSFALAFETRSVEFTAASTQEMHQLVAGFRGILQAARTQRQXXXXXXXQLPTLEASQN
Sbjct:    1 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 1729

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BLAST of jgi.p|Trimin1|349244 vs. uniprot
Match: D7FS10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS10_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 4.920e-9
Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = 0

Query: 1207 EDEIVDWSALRRALPKEFSVEFNEGSIGMSLVRTAADTAE--VSKVVERGQAHTGGVKAGDVVSAVGDSVATSMNXXXXXXXXXXXXXXXYGTTLAFLNILGRPVTLWFQKGEDGT 1320
            + + VD  A+R  L  EF V F EG++GM+L     DT +  V K+VE+GQA   G++  D+V  VG++  +S                 YGT LAF+NI+GRP+ L F+K + G+
Sbjct:  182 KQDPVDAIAVRSELEDEFRVSFREGAMGMTLSMDP-DTRDAIVGKIVEQGQAFRAGIQTDDLVIGVGENTVSS-----------------YGTVLAFMNIMGRPIELHFRKSDKGS 279

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349244 vs. uniprot

BLAST of jgi.p|Trimin1|349244 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YTV8_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7FS10_ECTSI	4.920e-9	37.93	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 70..354
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..432
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1135..1189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1545..1572
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 349..380
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1708..1729
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 639..656
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 281..340
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1159..1173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1135..1151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 762..1101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 875..899
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1427..1444
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 612..636
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1335..1400
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1425..1475
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1545..1563
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 607..665
None	No IPR available	PANTHER	PTHR47096	MISSHAPEN LIKE KINASE 1	coord: 228..809
IPR036034	PDZ superfamily	SUPERFAMILY	50156	PDZ domain-like	coord: 1223..1290

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_39	contig	Contig_39:819181..835788 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349244	mRNA_9241	Tribonema minus UTEX_B_3156	mRNA	Contig_39 819181..835788 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|349244|estExt_Genemark1.C_Ctg_390090 ID=Trimin1|349244|estExt_Genemark1.C_Ctg_390090|Name=jgi.p|Trimin1|349244|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1730bp
MGGVVSRFLNSWRRGDAPDQIGDNTPEEKRSGKQQKGQKKLRETPTKQSG
AVKRAASPDGAGKAKKSERQQQWDERVKKQAQEKQQQRQRKESKSQRAAR
LQREAEERAQEEKRLQQEAEKKARLQEEAAERARLQQEAAEKARLQQQAA
EKARLQREAEEKARLQQEAAEKARLQREAQEKARLQQEAAAAAEKARQQH
EAAEKARLQREAEEKARLQQEAAEKARLRREALEKVRLQREAQEKARQQQ
EAAAAAEKATQQQEAAEKARLQQQAAEKARQQQEAAEKARLQQQAAEKAR
LQREAEEKTRLQRESLEKARAQQEEEARAQRARARELEAQAAEAAQRAQA
RAKQQQPQQPQAKAKASQDQAGSSKAHQHGQQAALKAKLDHEQARALPTH
SASAVKKAGGGGIGISSSGGKGSGKPQPIVGGDSFGTRVNVMVQRAVASA
ASAKQKAAVKYRDALYRSGLESRLAGTRLGDVVRGADPVAALVVALLLTL
AAAWSLARVFSPRNSARRGAPAHAGGGVVAGTRIRCAQQLVSRLAGTRLG
EVVRGADPVAALIVALLLTLAAAWSLARACGPPLVVALLLTLATAWSLAR
AFGPRDRSPPKRLSIQVSSKAGPTGRRRSKASRSPSPAGSPGARPPSPPP
PGTSDPSPMAGAAAAVALADTPRGAASAILSAPRAAAIPAAAVGNDASDA
AGDAALAAAAAALPAAAAAVAVAVTAAAAAPAAAAASAAAAAPVAATAAA
AAAAAGGAAAFTPTRPSGSRPSSPRSGLFPRMGGSRPASPRSSGGSGGAA
EAAAAAPADAPSSAATAVPAADAATPERKAGGLLSKLSGGGGGSRHASPR
HGAAASAPSPEAAAAAADKDTSGSDDSGGGGSGSGSFFKMGTSSSRPASP
RHGGDAPPSSPTGRPASPRSSAAPAASPGAAAGGGGGGGGSAASPAVASP
AAAAQTSGAAAVTPSAAAAAAAAAQEECARPSGGGDSSSRPGSPRSGGGG
GSRALAEPAGAASSAAASPSPPASPAGAAAAERAVAPAAAAAAAALMRTP
SRGGARGGGGGSPAVTSATDSAMEAAGGKESAGTGLESHDAVPSSPQAVA
QEATIPAAAIPAYPVTPQAPAAALGGSAVSAMSEQIQASRKSSSSGRTLL
ERIHSDQAPRRSSGSSSTGGGGGGGSTLLERLRGGQTSTTEVAAEVAGGS
GAAHGGEDEIVDWSALRRALPKEFSVEFNEGSIGMSLVRTAADTAEVSKV
VERGQAHTGGVKAGDVVSAVGDSVATSMNAGDVVSAVGDTTATSYGTTLA
FLNILGRPVTLWFQKGEDGTAAEDTEALEAIQAAFPSNENGEEGTAAEDT
EALEVAQAAFPPNEAAAQSAAMLPPPPRRHGSSGSAAKRASGSSAAAGGS
GGGDVDVVDVRASLSSGSRGFRAMLRSGGGSSSSAGSFGGSPHRRTGSLT
AFFKGGQGEGGGGDAESPRRSMPHTPVSTSKMRRMQEVAGPDDSFDEKMF
KGVLVTKYSTKGAPLPRVLFIDETQSLAWREPESSPMRETQSLAWREPES
SPMHESQSLAWREPESSPMRGHKRARSLTLLLKGDRKAMELASLVDVIAG
DEQGDRKAVELASLVNVSVGDEQGDRNALELASLVDVIAGDEQDPAVPGE
IGSDALRHAAGSGTHEATLMARSFALAFETRSVEFTAASTQEMHQLVAGF
RGILQAARTQRQRQQEQQEQLPTLEASQN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036034	PDZ_sf