Trimin1|349243|estExt_Genemark1.C_Ctg_390084 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349243
Unique NameTrimin1|349243|estExt_Genemark1.C_Ctg_390084
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length593
Homology
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BLAST of jgi.p|Trimin1|349243 vs. uniprot
Match: A0A835YV39_9STRA (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV39_9STRA)

HSP 1 Score: 962 bits (2488), Expect = 0.000e+0
Identity = 592/592 (100.00%), Postives = 592/592 (100.00%), Query Frame = 0 
Query:    1 MRGRRRPAASARSLAPFRKGALQHRTAGGGAAAMLSAAADAGDAHHFPNSHSATSXXXXXXXXXXXXLASSGGDXXXXXXXXXXXXXXXXXXXXCGDRFAISGSGGGGGVARELGGDPGGVDAVPVNAVAMCPRAAVAVTASKQLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCLIRAWDLAGGDAQWHLDGHGVYASISVEGRAGVSTSMRETPDDWGAAAAAEVAVGGTAPPARAKRRLVCTTFSAVAFSPDGSLLASGDSAGVVKVWDIESRLCVMSTGSHQWQGYTTPVRQAGITPCNQYLMAVIGRALRVWSVATGELLRAIQMTSLVTTVSDLPRQELLCFAHLPARDGSGAGSLIAAGDVTVYKRMELAPILLCSLEQARAAPALNHFQWRLDGHSEAVTAMALSSDGAYLATGSADTTGKARTLCMQLLSGHRAGLCSIAFARGSTWVITGSNDGRMRVWHRDTGRCTQTVITGTCMCAVSGDENWVALYRGAEGVRGANRGGLXXXXXXXXXXXGDVQLADLGGLLYERRIRLLRHGRADSVPLTPQERLTYRAVDFADDAVFRRLAEFVV 592
            MRGRRRPAASARSLAPFRKGALQHRTAGGGAAAMLSAAADAGDAHHFPNSHSATSXXXXXXXXXXXXLASSGGDXXXXXXXXXXXXXXXXXXXXCGDRFAISGSGGGGGVARELGGDPGGVDAVPVNAVAMCPRAAVAVTASKQLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCLIRAWDLAGGDAQWHLDGHGVYASISVEGRAGVSTSMRETPDDWGAAAAAEVAVGGTAPPARAKRRLVCTTFSAVAFSPDGSLLASGDSAGVVKVWDIESRLCVMSTGSHQWQGYTTPVRQAGITPCNQYLMAVIGRALRVWSVATGELLRAIQMTSLVTTVSDLPRQELLCFAHLPARDGSGAGSLIAAGDVTVYKRMELAPILLCSLEQARAAPALNHFQWRLDGHSEAVTAMALSSDGAYLATGSADTTGKARTLCMQLLSGHRAGLCSIAFARGSTWVITGSNDGRMRVWHRDTGRCTQTVITGTCMCAVSGDENWVALYRGAEGVRGANRGGLXXXXXXXXXXXGDVQLADLGGLLYERRIRLLRHGRADSVPLTPQERLTYRAVDFADDAVFRRLAEFVV
Sbjct:    1 MRGRRRPAASARSLAPFRKGALQHRTAGGGAAAMLSAAADAGDAHHFPNSHSATSXXXXXXXXXXXXLASSGGDXXXXXXXXXXXXXXXXXXXXCGDRFAISGSGGGGGVARELGGDPGGVDAVPVNAVAMCPRAAVAVTASKQLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCLIRAWDLAGGDAQWHLDGHGVYASISVEGRAGVSTSMRETPDDWGAAAAAEVAVGGTAPPARAKRRLVCTTFSAVAFSPDGSLLASGDSAGVVKVWDIESRLCVMSTGSHQWQGYTTPVRQAGITPCNQYLMAVIGRALRVWSVATGELLRAIQMTSLVTTVSDLPRQELLCFAHLPARDGSGAGSLIAAGDVTVYKRMELAPILLCSLEQARAAPALNHFQWRLDGHSEAVTAMALSSDGAYLATGSADTTGKARTLCMQLLSGHRAGLCSIAFARGSTWVITGSNDGRMRVWHRDTGRCTQTVITGTCMCAVSGDENWVALYRGAEGVRGANRGGLXXXXXXXXXXXGDVQLADLGGLLYERRIRLLRHGRADSVPLTPQERLTYRAVDFADDAVFRRLAEFVV 592
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349243 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YV39_9STRA0.000e+0100.00Quinon protein alcohol dehydrogenase-like superfam... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 404..438
e-value: 1.8
score: 15.5
coord: 152..192
e-value: 150.0
score: 3.2
coord: 246..283
e-value: 7.0E-4
score: 28.9
coord: 442..481
e-value: 1.6E-5
score: 34.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 409..438
e-value: 0.0017
score: 19.1
coord: 260..283
e-value: 0.005
score: 17.7
coord: 445..480
e-value: 3.1E-5
score: 24.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 411..438
score: 9.940341
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 260..292
score: 11.477578
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 449..490
score: 13.883689
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 381..512
e-value: 1.5E-19
score: 71.8
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 121..356
e-value: 3.5E-20
score: 73.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..67
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 449..480
score: 10.442869
IPR037783Transcription initiation factor TFIID subunit 5PANTHERPTHR19879TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 125..295
coord: 259..506
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 91..503

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_39contigContig_39:750736..766370 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349243mRNA_9238Tribonema minus UTEX_B_3156 mRNAContig_39 750736..766370 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349243|estExt_Genemark1.C_Ctg_390084 ID=Trimin1|349243|estExt_Genemark1.C_Ctg_390084|Name=jgi.p|Trimin1|349243|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=593bp
MRGRRRPAASARSLAPFRKGALQHRTAGGGAAAMLSAAADAGDAHHFPNS
HSATSGGGDAQLYPNSHLASSGGDAHRFLNSHLASSGGGGSQHFCGDRFA
ISGSGGGGGVARELGGDPGGVDAVPVNAVAMCPRAAVAVTASKQLVNAVA
MCPRAAVVVTASKQPVDAVAMCPRAAVAGTASKQDCLIRAWDLAGGDAQW
HLDGHGVYASISVEGRAGVSTSMRETPDDWGAAAAAEVAVGGTAPPARAK
RRLVCTTFSAVAFSPDGSLLASGDSAGVVKVWDIESRLCVMSTGSHQWQG
YTTPVRQAGITPCNQYLMAVIGRALRVWSVATGELLRAIQMTSLVTTVSD
LPRQELLCFAHLPARDGSGAGSLIAAGDVTVYKRMELAPILLCSLEQARA
APALNHFQWRLDGHSEAVTAMALSSDGAYLATGSADTTGKARTLCMQLLS
GHRAGLCSIAFARGSTWVITGSNDGRMRVWHRDTGRCTQTVITGTCMCAV
SGDENWVALYRGAEGVRGANRGGLQGLQGQGGSGGGDVQLADLGGLLYER
RIRLLRHGRADSVPLTPQERLTYRAVDFADDAVFRRLAEFVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR037783Taf5
IPR011047Quinoprotein_ADH-like_supfam