mRNA_9208 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|165655
Unique Name	mRNA_9208
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|165655 vs. uniprot
Match: A0A835YTT8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT8_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.290e-12
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1

Query: 1261 GANVTVGSRRLSVCVLGCQGGLKGAIQALGRTRQWAVMM 1377
            GANVTVGSRRLSVCVLGCQGGLKGAIQALGRTRQWAVMM
Sbjct:  421 GANVTVGSRRLSVCVLGCQGGLKGAIQALGRTRQWAVMM 459

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|165655 vs. uniprot

BLAST of jgi.p|Trimin1|165655 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YTT8_9STRA	1.290e-12	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_39	contig	Contig_39:386203..387582 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|165655\|e_gw1.39.113.1
Hectar predicted targeting category	other localisation
TranscriptId	165977
Track	FilteredModels1
ProteinId	165655

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|165655	gene_9208	Tribonema minus UTEX_B_3156	gene	Contig_39 386203..387582 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9208_1	exon_9208_1	Tribonema minus UTEX_B_3156	exon	Contig_39 386203..387582 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9208	CDS_9208	Tribonema minus UTEX_B_3156	CDS	Contig_39 386203..387582 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|165655	Trimin1\|165655\|e_gw1.39.113.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_39 386203..387582 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_39:386203..387582+
coding sequence from alignment at Contig_39:386203..387582+

spliced messenger RNA

>mRNA_9208 ID=mRNA_9208|Name=jgi.p|Trimin1|165655|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1380bp|location=Sequence derived from alignment at Contig_39:386203..387582+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGACGGGCCTGCTGGAGCTGCTGGGCGAGCTCACAGCGCTGAGAGAGCT
GCAGCTCAGCGGCTGCAAGCGCGTCGCCCGCCTGCCGGACTCCCTGGGGC
AGCTGGCGTCGCTGACGCTGCTGGACATGACGGCGTGCTTCGTGCTCGCG
CGCTTGCCAGAGTCACTCGGCGGACTGACGGCGCTCACAACGCTCAACCT
GCACATGTGCACAGCGCTCGCGTGCCTGCCGGAGTCGGCGGGCGGCATGG
CGGCGCTGACAAGGCTCGACATGACCGGGTGCGAGGCGGTCACGCGCCTG
CCCGACTCGGTCGGCCAGCTAGCGGCGCTGCGAGAGCTATGCTTGGATGA
CTGCACACGGCTCGAAGCTCTGCCGGAATCGCTGGGGCAGCTGACGGCAC
TGACGTCGTTCAGGCTGTGCCGCTGCAGGGCGCTAACGCGCCTGCCGGAG
TGGCTGGCGGACCTGACGGGGCTCACGACGCTGCTTGTGGACGGATGTGT
GGGCCTCACGCATCTGCCACAGTGGTTTGGGGAGCACGCGTCACAAGATA
CGCTCGACTTCACCGGCTACAAGCGTCTCACCTGCTTGCCGGAGTTCATC
GGGCTAATGTCGGCGACCCTGACGACGCTCAATCTCAGCGAATGTTCCAG
CCTTGCTGCTCTGCCAGACTTCCTAGGGCAGCTAGCGGCGCTGAAGTCTC
TCAAGCTGTGCTACTGTCACTCTCTTCAGAGTTTGCCGGATTCATTGGGG
CAGCTGACCGCGCTCAGTTTCATCCATCTGCACAGATGCGAAGCACTCAC
GGCCCTGCCAGACTCAGTCGGACAGCTGACGAAGCTGACATCGCTCAACC
TGATGCTGTGTACCGCCCTCACATCACTGCCTGAGTCATTCGGGCGGCTG
GCGGCGCTGACATCGCTCAACCTGGAGGAGTGTACCGCCCTCGCGTCGTT
GCCGAAGTCATTCGGGCAGCTGGCGCTGCTGCCTTCGCTCGACCTGACCG
GCTGCGCCTCGCTCGTTGCGCTGCCGGCCTCCCTCGGACAGCTGACGCGG
CTGCAACAGCTTTGTCTGCGCAGGTGCGCCTCGCTCGCGGCCTTGCCAGA
CACCCTCGGGCAGCTGACTGCGCTGCAATCGCTAGATCTCAGCGAATGTA
CTGCGCTTTCGGCCCTGCCAGACACCCTGGGGCAGCTGGCGGCGCCAACG
CGGCTCAACCTCAAGGACTGCCGTGCAATCACGGCGCTGCCTGCCACGAT
AGGCTCTCTCGGAGCAAATGTGACAGTCGGGAGCCGGAGGCTGAGCGTCT
GCGTACTGGGCTGCCAAGGGGGACTGAAGGGAGCGATACAAGCGCTAGGT
CGCACGCGCCAATGGGCCGTGATGATGTAG

protein sequence of jgi.p|Trimin1|165655

>Trimin1|165655|e_gw1.39.113.1 ID=Trimin1|165655|e_gw1.39.113.1|Name=jgi.p|Trimin1|165655|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=460bp
LTGLLELLGELTALRELQLSGCKRVARLPDSLGQLASLTLLDMTACFVLA
RLPESLGGLTALTTLNLHMCTALACLPESAGGMAALTRLDMTGCEAVTRL
PDSVGQLAALRELCLDDCTRLEALPESLGQLTALTSFRLCRCRALTRLPE
WLADLTGLTTLLVDGCVGLTHLPQWFGEHASQDTLDFTGYKRLTCLPEFI
GLMSATLTTLNLSECSSLAALPDFLGQLAALKSLKLCYCHSLQSLPDSLG
QLTALSFIHLHRCEALTALPDSVGQLTKLTSLNLMLCTALTSLPESFGRL
AALTSLNLEECTALASLPKSFGQLALLPSLDLTGCASLVALPASLGQLTR
LQQLCLRRCASLAALPDTLGQLTALQSLDLSECTALSALPDTLGQLAAPT
RLNLKDCRAITALPATIGSLGANVTVGSRRLSVCVLGCQGGLKGAIQALG
RTRQWAVMM*

mRNA from alignment at Contig_39:386203..387582+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9208 ID=mRNA_9208|Name=jgi.p|Trimin1|165655|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1380bp|location=Sequence derived from alignment at Contig_39:386203..387582+ (Tribonema minus UTEX_B_3156 )
CTGACGGGCCTGCTGGAGCTGCTGGGCGAGCTCACAGCGCTGAGAGAGCT
GCAGCTCAGCGGCTGCAAGCGCGTCGCCCGCCTGCCGGACTCCCTGGGGC
AGCTGGCGTCGCTGACGCTGCTGGACATGACGGCGTGCTTCGTGCTCGCG
CGCTTGCCAGAGTCACTCGGCGGACTGACGGCGCTCACAACGCTCAACCT
GCACATGTGCACAGCGCTCGCGTGCCTGCCGGAGTCGGCGGGCGGCATGG
CGGCGCTGACAAGGCTCGACATGACCGGGTGCGAGGCGGTCACGCGCCTG
CCCGACTCGGTCGGCCAGCTAGCGGCGCTGCGAGAGCTATGCTTGGATGA
CTGCACACGGCTCGAAGCTCTGCCGGAATCGCTGGGGCAGCTGACGGCAC
TGACGTCGTTCAGGCTGTGCCGCTGCAGGGCGCTAACGCGCCTGCCGGAG
TGGCTGGCGGACCTGACGGGGCTCACGACGCTGCTTGTGGACGGATGTGT
GGGCCTCACGCATCTGCCACAGTGGTTTGGGGAGCACGCGTCACAAGATA
CGCTCGACTTCACCGGCTACAAGCGTCTCACCTGCTTGCCGGAGTTCATC
GGGCTAATGTCGGCGACCCTGACGACGCTCAATCTCAGCGAATGTTCCAG
CCTTGCTGCTCTGCCAGACTTCCTAGGGCAGCTAGCGGCGCTGAAGTCTC
TCAAGCTGTGCTACTGTCACTCTCTTCAGAGTTTGCCGGATTCATTGGGG
CAGCTGACCGCGCTCAGTTTCATCCATCTGCACAGATGCGAAGCACTCAC
GGCCCTGCCAGACTCAGTCGGACAGCTGACGAAGCTGACATCGCTCAACC
TGATGCTGTGTACCGCCCTCACATCACTGCCTGAGTCATTCGGGCGGCTG
GCGGCGCTGACATCGCTCAACCTGGAGGAGTGTACCGCCCTCGCGTCGTT
GCCGAAGTCATTCGGGCAGCTGGCGCTGCTGCCTTCGCTCGACCTGACCG
GCTGCGCCTCGCTCGTTGCGCTGCCGGCCTCCCTCGGACAGCTGACGCGG
CTGCAACAGCTTTGTCTGCGCAGGTGCGCCTCGCTCGCGGCCTTGCCAGA
CACCCTCGGGCAGCTGACTGCGCTGCAATCGCTAGATCTCAGCGAATGTA
CTGCGCTTTCGGCCCTGCCAGACACCCTGGGGCAGCTGGCGGCGCCAACG
CGGCTCAACCTCAAGGACTGCCGTGCAATCACGGCGCTGCCTGCCACGAT
AGGCTCTCTCGGAGCAAATGTGACAGTCGGGAGCCGGAGGCTGAGCGTCT
GCGTACTGGGCTGCCAAGGGGGACTGAAGGGAGCGATACAAGCGCTAGGT
CGCACGCGCCAATGGGCCGTGATGATGTAG

Coding sequence (CDS) from alignment at Contig_39:386203..387582+

>mRNA_9208 ID=mRNA_9208|Name=jgi.p|Trimin1|165655|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1380bp|location=Sequence derived from alignment at Contig_39:386203..387582+ (Tribonema minus UTEX_B_3156 )
CTGACGGGCCTGCTGGAGCTGCTGGGCGAGCTCACAGCGCTGAGAGAGCT
GCAGCTCAGCGGCTGCAAGCGCGTCGCCCGCCTGCCGGACTCCCTGGGGC
AGCTGGCGTCGCTGACGCTGCTGGACATGACGGCGTGCTTCGTGCTCGCG
CGCTTGCCAGAGTCACTCGGCGGACTGACGGCGCTCACAACGCTCAACCT
GCACATGTGCACAGCGCTCGCGTGCCTGCCGGAGTCGGCGGGCGGCATGG
CGGCGCTGACAAGGCTCGACATGACCGGGTGCGAGGCGGTCACGCGCCTG
CCCGACTCGGTCGGCCAGCTAGCGGCGCTGCGAGAGCTATGCTTGGATGA
CTGCACACGGCTCGAAGCTCTGCCGGAATCGCTGGGGCAGCTGACGGCAC
TGACGTCGTTCAGGCTGTGCCGCTGCAGGGCGCTAACGCGCCTGCCGGAG
TGGCTGGCGGACCTGACGGGGCTCACGACGCTGCTTGTGGACGGATGTGT
GGGCCTCACGCATCTGCCACAGTGGTTTGGGGAGCACGCGTCACAAGATA
CGCTCGACTTCACCGGCTACAAGCGTCTCACCTGCTTGCCGGAGTTCATC
GGGCTAATGTCGGCGACCCTGACGACGCTCAATCTCAGCGAATGTTCCAG
CCTTGCTGCTCTGCCAGACTTCCTAGGGCAGCTAGCGGCGCTGAAGTCTC
TCAAGCTGTGCTACTGTCACTCTCTTCAGAGTTTGCCGGATTCATTGGGG
CAGCTGACCGCGCTCAGTTTCATCCATCTGCACAGATGCGAAGCACTCAC
GGCCCTGCCAGACTCAGTCGGACAGCTGACGAAGCTGACATCGCTCAACC
TGATGCTGTGTACCGCCCTCACATCACTGCCTGAGTCATTCGGGCGGCTG
GCGGCGCTGACATCGCTCAACCTGGAGGAGTGTACCGCCCTCGCGTCGTT
GCCGAAGTCATTCGGGCAGCTGGCGCTGCTGCCTTCGCTCGACCTGACCG
GCTGCGCCTCGCTCGTTGCGCTGCCGGCCTCCCTCGGACAGCTGACGCGG
CTGCAACAGCTTTGTCTGCGCAGGTGCGCCTCGCTCGCGGCCTTGCCAGA
CACCCTCGGGCAGCTGACTGCGCTGCAATCGCTAGATCTCAGCGAATGTA
CTGCGCTTTCGGCCCTGCCAGACACCCTGGGGCAGCTGGCGGCGCCAACG
CGGCTCAACCTCAAGGACTGCCGTGCAATCACGGCGCTGCCTGCCACGAT
AGGCTCTCTCGGAGCAAATGTGACAGTCGGGAGCCGGAGGCTGAGCGTCT
GCGTACTGGGCTGCCAAGGGGGACTGAAGGGAGCGATACAAGCGCTAGGT
CGCACGCGCCAATGGGCCGTGATGATGTAG