Trimin1|349182|estExt_Genemark1.C_Ctg_380041 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|349182
Unique Name	Trimin1\|349182\|estExt_Genemark1.C_Ctg_380041
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	812

Homology

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BLAST of jgi.p|Trimin1|349182 vs. uniprot
Match: A0A835YWZ7_9STRA (Myb-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ7_9STRA)

HSP 1 Score: 1137 bits (2941), Expect = 0.000e+0
Identity = 811/811 (100.00%), Postives = 811/811 (100.00%), Query Frame = 0

Query:    1 MASPQSTPAAAPRQWPHSCEQAQRHEQQQCALAAVHGGAADVAAALPCAGAAEQCDFAPPQQPVRAPLQAGADACLDAAXXXXXXXXXHAIAAAPSPLQAEQEQAWEAGATGGERGRGNTVDDRVLYPEGTAVRRQFVEGWFNGQREVEADDAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRPAAAAVGTREVVLRDWCITMSPLPRNDGSSSIRNLQNSGVAQPKYYIHGFADAGSSTSNESAAAVIDDTSGDDARSSNSRSSAPVKLQVEARIDQHTVATVGGARYGVRGAPSDAGAAARPPPHGALFAVRGGVPMQWRRAVARAYERAXXXXXXXXXXXXXXXXXXXGDRYGDVQLPTGTIAADKQASVSKVSRKRGAVATKAKNARSSTGLAALVAVKPEPQEVAAAGASPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDESGVKVTCTRSGRKRVPVLEWWRSQRLSVGPDSNGDEWTEQQEALLQQAQLRTDPGHANFWVQVAKGVPGKSAGQCSQRWFAQLEEHNDGAGGTSKGNQAGTKRKRGKSAAATPSAQDKPAASAAKTAQAASKGGKRGQTRAAAIASYLSSQAGHMDDVFQDSGGAQGKKKRKLSVPGVVSLPPNTLGATVPTPKAQGKTGKAGKSPANARQSQASGNVSKSYMVAVSKRMRKQPPPKAGAIMVKAKRPKAAKAVTTXTAAGAGYKLKGMVSSGGAKGPSDG 811
            MASPQSTPAAAPRQWPHSCEQAQRHEQQQCALAAVHGGAADVAAALPCAGAAEQCDFAPPQQPVRAPLQAGADACLDAAXXXXXXXXXHAIAAAPSPLQAEQEQAWEAGATGGERGRGNTVDDRVLYPEGTAVRRQFVEGWFNGQREVEADDAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRPAAAAVGTREVVLRDWCITMSPLPRNDGSSSIRNLQNSGVAQPKYYIHGFADAGSSTSNESAAAVIDDTSGDDARSSNSRSSAPVKLQVEARIDQHTVATVGGARYGVRGAPSDAGAAARPPPHGALFAVRGGVPMQWRRAVARAYERAXXXXXXXXXXXXXXXXXXXGDRYGDVQLPTGTIAADKQASVSKVSRKRGAVATKAKNARSSTGLAALVAVKPEPQEVAAAGASPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDESGVKVTCTRSGRKRVPVLEWWRSQRLSVGPDSNGDEWTEQQEALLQQAQLRTDPGHANFWVQVAKGVPGKSAGQCSQRWFAQLEEHNDGAGGTSKGNQAGTKRKRGKSAAATPSAQDKPAASAAKTAQAASKGGKRGQTRAAAIASYLSSQAGHMDDVFQDSGGAQGKKKRKLSVPGVVSLPPNTLGATVPTPKAQGKTGKAGKSPANARQSQASGNVSKSYMVAVSKRMRKQPPPKAGAIMVKAKRPKAAKAVTTXTAAGAGYKLKGMVSSGGAKGPSDG
Sbjct:    1 MASPQSTPAAAPRQWPHSCEQAQRHEQQQCALAAVHGGAADVAAALPCAGAAEQCDFAPPQQPVRAPLQAGADACLDAAXXXXXXXXXHAIAAAPSPLQAEQEQAWEAGATGGERGRGNTVDDRVLYPEGTAVRRQFVEGWFNGQREVEADDAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRPAAAAVGTREVVLRDWCITMSPLPRNDGSSSIRNLQNSGVAQPKYYIHGFADAGSSTSNESAAAVIDDTSGDDARSSNSRSSAPVKLQVEARIDQHTVATVGGARYGVRGAPSDAGAAARPPPHGALFAVRGGVPMQWRRAVARAYERAXXXXXXXXXXXXXXXXXXXGDRYGDVQLPTGTIAADKQASVSKVSRKRGAVATKAKNARSSTGLAALVAVKPEPQEVAAAGASPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDESGVKVTCTRSGRKRVPVLEWWRSQRLSVGPDSNGDEWTEQQEALLQQAQLRTDPGHANFWVQVAKGVPGKSAGQCSQRWFAQLEEHNDGAGGTSKGNQAGTKRKRGKSAAATPSAQDKPAASAAKTAQAASKGGKRGQTRAAAIASYLSSQAGHMDDVFQDSGGAQGKKKRKLSVPGVVSLPPNTLGATVPTPKAQGKTGKAGKSPANARQSQASGNVSKSYMVAVSKRMRKQPPPKAGAIMVKAKRPKAAKAVTTXTAAGAGYKLKGMVSSGGAKGPSDG 811

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BLAST of jgi.p|Trimin1|349182 vs. uniprot
Match: D7G8K9_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K9_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.720e-5
Identity = 35/105 (33.33%), Postives = 47/105 (44.76%), Query Frame = 0

Query:  542 RKRVPVLEWWRSQRLS----------------------------------VGPDSNGDE--WTEQQEALLQQAQLRTDPGHANFWVQVAKGVPGKSAGQCSQRWF 610
            R   PVL+WWRSQRL+                                  VG D+NG+E  WT+ Q   L++AQ  T P  + FW  VA  V G++  +C Q+WF
Sbjct:   28 RGAAPVLDWWRSQRLTKTPSVGVVGAARFPLGQPSTGNHADMDSACRLKTVGRDANGEEEPWTKAQMHSLRRAQAETAPSTSAFWSAVACNVDGRNPQECQQKWF 132

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349182 vs. uniprot

BLAST of jgi.p|Trimin1|349182 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YWZ7_9STRA	0.000e+0	100.00	Myb-like domain-containing protein n=1 Tax=Tribone...	[more]
D7G8K9_ECTSI	1.720e-5	33.33	Myb-like domain-containing protein n=1 Tax=Ectocar...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 563..615 e-value: 1.5E-4 score: 31.1
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 559..613 score: 7.735266
None	No IPR available	GENE3D	1.10.10.60		coord: 560..623 e-value: 1.3E-11 score: 46.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 463..538
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 421..442
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 255..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 754..774
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 688..736
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 609..667
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 561..613

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_38	contig	Contig_38:467264..476476 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349182	mRNA_9307	Tribonema minus UTEX_B_3156	mRNA	Contig_38 467264..476476 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|349182|estExt_Genemark1.C_Ctg_380041 ID=Trimin1|349182|estExt_Genemark1.C_Ctg_380041|Name=jgi.p|Trimin1|349182|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=812bp
MASPQSTPAAAPRQWPHSCEQAQRHEQQQCALAAVHGGAADVAAALPCAG
AAEQCDFAPPQQPVRAPLQAGADACLDAAAATSAASAAHAIAAAPSPLQA
EQEQAWEAGATGGERGRGNTVDDRVLYPEGTAVRRQFVEGWFNGQREVEA
DDAADDTQAAAAAAAAAAAAAAALAAPATEPPMPAAAAAAALSRPAAAAV
GTREVVLRDWCITMSPLPRNDGSSSIRNLQNSGVAQPKYYIHGFADAGSS
TSNESAAAVIDDTSGDDARSSNSRSSAPVKLQVEARIDQHTVATVGGARY
GVRGAPSDAGAAARPPPHGALFAVRGGVPMQWRRAVARAYERAAAAAAAE
VAASTEGQQGGGGDRYGDVQLPTGTIAADKQASVSKVSRKRGAVATKAKN
ARSSTGLAALVAVKPEPQEVAAAGASPAAPSTSRSSGARRKSAAKAAAAA
AAAAAPASHCSAASRKTAAKAPKSQKQRLSAAAETPIAASKKPSEKGSSH
AKGGGGSAGHAAGAGGGGTNSGGGGGGGDESGVKVTCTRSGRKRVPVLEW
WRSQRLSVGPDSNGDEWTEQQEALLQQAQLRTDPGHANFWVQVAKGVPGK
SAGQCSQRWFAQLEEHNDGAGGTSKGNQAGTKRKRGKSAAATPSAQDKPA
ASAAKTAQAASKGGKRGQTRAAAIASYLSSQAGHMDDVFQDSGGAQGKKK
RKLSVPGVVSLPPNTLGATVPTPKAQGKTGKAGKSPANARQSQASGNVSK
SYMVAVSKRMRKQPPPKAGAIMVKAKRPKAAKAVTTTTAAGAGYKLKGMV
SSGGAKGPSDG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf