mRNA_9282 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A835YVS6_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVS6_9STRA) HSP 1 Score: 293 bits (751), Expect = 1.110e-100 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1
Query: 1 MSAASPAFRDQYAEQPTATKVKTITGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAEVLNQNSNGHGATGSIHIPN 432
MSAASPAFRDQYAEQPTATKVKTITGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAEVLNQNSNGHGATGSIHIPN
Sbjct: 1 MSAASPAFRDQYAEQPTATKVKTITGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAEVLNQNSNGHGATGSIHIPN 144
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A835YYQ5_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ5_9STRA) HSP 1 Score: 191 bits (484), Expect = 2.330e-59 Identity = 95/134 (70.90%), Postives = 109/134 (81.34%), Query Frame = 1
Query: 31 QYAEQPTATKVKTI-TGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAEVLNQNSNGHGATGSIHIP 429
Q EQ KVK I G FLEAMA+N D+PVV+KFYDTFCRACKA+APKFERMAQENPGV+FY+VEFR++KPLCKSLGITMLPTIQIY+G+AGK+A MPVGPKRFH+AE LA VL Q N + +IHIP
Sbjct: 57 QRQEQSENRKVKLIENGTDGFLEAMASNADRPVVIKFYDTFCRACKAIAPKFERMAQENPGVSFYEVEFRENKPLCKSLGITMLPTIQIYRGAAGKVASMPVGPKRFHLAEEALASVLAQEGN----SAAIHIP 186
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A6H5K275_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K275_9PHAE) HSP 1 Score: 108 bits (269), Expect = 1.140e-26 Identity = 54/129 (41.86%), Postives = 77/129 (59.69%), Query Frame = 1
Query: 37 AEQPTATK-------VKTITGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENP--GVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAEVLNQNSN 396
A +PTA + V+ I ++ AMA + DK VV+KFYD FCRAC + P++E +++ P F+ VEF K LCK LGI LPT+QIY G+ G++AD+P GP RF E +A V++ +
Sbjct: 64 AARPTAAQEPERRPNVQAIDSNDDYVSAMAQHEDKLVVIKFYDQFCRACDEIRPRYEDLSRSQPEEDAVFFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGRVADLPAGPSRFTDVEEKIAAVISSKKS 192
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A7S4A7N2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7N2_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.400e-20 Identity = 51/129 (39.53%), Postives = 74/129 (57.36%), Query Frame = 1
Query: 10 ASPAFRDQYAEQPTATKVKTITGEMQFLEAMAAN-GDKPVVLKFYDTFCRACKAVAPKFERMAQE-NPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAEVLNQN 390
A P R Q + P I E FL AM+ + GDK V +KFY +CRACK +AP+FER+A+E AFY++EF +K LC+ L I LP +Q ++G+ G +A + GP +F L ++L +
Sbjct: 101 AKPLARKQSSHVPA------IVDEDTFLAAMSKSAGDKVVAIKFYAGWCRACKTIAPRFERLAKEFGEEAAFYEIEFSANKDLCRRLDIKKLPCVQFFRGAEGHVATVMCGPSKFPDVRLKLEDLLGHS 223
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A7S3ATR9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ATR9_9EUKA) HSP 1 Score: 87.8 bits (216), Expect = 6.410e-19 Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 103 AANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAEVLNQNSNGHGATGSIHIP 429
A ++ VV+KF+ ++CRACKA++PKF R+A + P V F+++ F +K LCKSLGI +LP I+I GS GK+ GP + + L E L Q HG S +P
Sbjct: 71 ATRENRVVVIKFFASWCRACKAMSPKFTRIADDWPDVEFHEIMFDNNKKLCKSLGIKILPYIEIIGGSGGKVEGFTCGPSKI----SRLQEKLEQ----HGLPPSEELP 171
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A7J9CGA3_GOSGO (Thioredoxin domain-containing protein n=4 Tax=Gossypium TaxID=3633 RepID=A0A7J9CGA3_GOSGO) HSP 1 Score: 85.1 bits (209), Expect = 2.540e-18 Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 1
Query: 70 ITGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRF 348
I +FL A++ GD+ V+++FY T+C +CKA+ PK R AQENP + F +V F ++KP+CKSL + +LP Y+G+ G++ +F
Sbjct: 4 IHSTQEFLSALSEAGDRLVIVEFYGTWCASCKALFPKLCRTAQENPEILFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKF 96
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: F0YB20_AURAN (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB20_AURAN) HSP 1 Score: 83.2 bits (204), Expect = 4.280e-18 Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 1
Query: 61 VKTITGEMQFLEAMA-ANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPG--VAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKR 345
V I G+ FL AM D+ V +KFY ++CRACK++AP+FER+A+E G V F+++EF +K LC+ L I LP +Q ++GS G + + GP +
Sbjct: 1 VVPIDGDEAFLAAMQYCTDDRLVAVKFYASWCRACKSIAPRFERLAKEFAGDEVQFFEIEFAANKELCRRLNIKKLPCVQYFRGSLGCVDTVMCGPSK 98
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A7S0CN45_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CN45_MICPS) HSP 1 Score: 86.3 bits (212), Expect = 9.960e-18 Identity = 44/127 (34.65%), Postives = 65/127 (51.18%), Query Frame = 1
Query: 25 RDQYAEQPTATKVKTITGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAEVLNQNSNGHG 405
+D + E+ VK G FL + GD VV+ FY +C AC+A+ PK ++A ENP F +VEF +K +C+S+G+ +LP +Y+G GK+A + H LAE G G
Sbjct: 116 KDAWWEKEAPENVKDCDGMDAFLGELQRAGDALVVVDFYARWCGACRALYPKLCKLAAENPDAVFLKVEFDDNKDMCRSMGVKVLPFFHMYRGKDGKVASFSASVSKVHRLRDALAEHGGDAGRGAG 242
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A067KPT7_JATCU (Thioredoxin domain-containing protein n=2 Tax=Jatropha curcas TaxID=180498 RepID=A0A067KPT7_JATCU) HSP 1 Score: 85.5 bits (210), Expect = 1.340e-17 Identity = 36/101 (35.64%), Postives = 63/101 (62.38%), Query Frame = 1
Query: 70 ITGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLA 372
I +FL A++ +GD+ V+++FY T+C +C+A+ PK R A+ENP + F +V F ++KP+CKSL + +LP Y+G+ G++ +F + +A
Sbjct: 96 IHSTQEFLSALSQSGDRLVIVEFYGTWCASCRALFPKLCRTAEENPDILFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKDAIA 196
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Match: A0A2G5DWJ1_AQUCA (Thioredoxin domain-containing protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5DWJ1_AQUCA) HSP 1 Score: 85.1 bits (209), Expect = 1.810e-17 Identity = 37/102 (36.27%), Postives = 64/102 (62.75%), Query Frame = 1
Query: 70 ITGEMQFLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPGVAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRFHVAEATLAE 375
I +FL+A++ G+K V+++FY T+C +C+A+ PK + AQENP + F +V F ++KP+CKSL + +LP Y+GS G++ +F + +A+
Sbjct: 97 IHSTQEFLDALSQAGEKLVIVEFYGTWCGSCRALFPKLCKTAQENPDIIFLKVNFDENKPMCKSLNVKVLPYFHFYRGSDGQLESFSCSLAKFQKIKDGIAK 198 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165559 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9282 ID=mRNA_9282|Name=jgi.p|Trimin1|165559|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=435bp|location=Sequence derived from alignment at Contig_38:224430..225742- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGCGCGGCGTCGCCTGCTTTCCGCGACCAGTATGCGGAGCAACCGACback to top protein sequence of jgi.p|Trimin1|165559 >Trimin1|165559|e_gw1.38.56.1 ID=Trimin1|165559|e_gw1.38.56.1|Name=jgi.p|Trimin1|165559|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=145bp MSAASPAFRDQYAEQPTATKVKTITGEMQFLEAMAANGDKPVVLKFYDTFback to top mRNA from alignment at Contig_38:224430..225742- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9282 ID=mRNA_9282|Name=jgi.p|Trimin1|165559|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1313bp|location=Sequence derived from alignment at Contig_38:224430..225742- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_38:224430..225742- >mRNA_9282 ID=mRNA_9282|Name=jgi.p|Trimin1|165559|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=435bp|location=Sequence derived from alignment at Contig_38:224430..225742- (Tribonema minus UTEX_B_3156 )back to top |