mRNA_9260 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165555
Unique NamemRNA_9260
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|165555 vs. uniprot
Match: A0A835YUJ6_9STRA (Tub domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUJ6_9STRA)

HSP 1 Score: 543 bits (1400), Expect = 2.750e-195
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1
Query:    1 DLRAFLVTSVPKSAGTVKCCVRRQRSSLQKLGQGGETYSLYLEGDDGDRFMLSACKRTSGLLHKTSAFAITMRPGEFAREQGGFLGELRATSRSADEFQLFDDGYSHEEIEKGNLKLPSSPGAYVNPRVRQEIGAVAYAPAEADLGTPASDGPRQMQVVLAQPGDGRGATTARRTSGATPLLDKMRAGVLTSTEVMLTNRVPRWNARLQAYVLNFNGRVTQASVKNFQLVESDDTAEKIRLQFGRTSKDSFTMDFTYPLSPLQAFAITLTSFESK 825
            DLRAFLVTSVPKSAGTVKCCVRRQRSSLQKLGQGGETYSLYLEGDDGDRFMLSACKRTSGLLHKTSAFAITMRPGEFAREQGGFLGELRATSRSADEFQLFDDGYSHEEIEKGNLKLPSSPGAYVNPRVRQEIGAVAYAPAEADLGTPASDGPRQMQVVLAQPGDGRGATTARRTSGATPLLDKMRAGVLTSTEVMLTNRVPRWNARLQAYVLNFNGRVTQASVKNFQLVESDDTAEKIRLQFGRTSKDSFTMDFTYPLSPLQAFAITLTSFESK
Sbjct:    1 DLRAFLVTSVPKSAGTVKCCVRRQRSSLQKLGQGGETYSLYLEGDDGDRFMLSACKRTSGLLHKTSAFAITMRPGEFAREQGGFLGELRATSRSADEFQLFDDGYSHEEIEKGNLKLPSSPGAYVNPRVRQEIGAVAYAPAEADLGTPASDGPRQMQVVLAQPGDGRGATTARRTSGATPLLDKMRAGVLTSTEVMLTNRVPRWNARLQAYVLNFNGRVTQASVKNFQLVESDDTAEKIRLQFGRTSKDSFTMDFTYPLSPLQAFAITLTSFESK 275          
BLAST of jgi.p|Trimin1|165555 vs. uniprot
Match: F0XZM0_AURAN (Tub domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZM0_AURAN)

HSP 1 Score: 184 bits (468), Expect = 5.260e-54
Identity = 123/278 (44.24%), Postives = 169/278 (60.79%), Query Frame = 1
Query:    1 DLRAFLVTSVPKSAGTVKCCVRRQRSSLQKLGQGGETYSLYLEGDDGDRFMLSACKRTSGLLHKTSAFAITMRPGEFAREQGGFLGELRATSRSADEFQLFDDGYSHEEIEKGNLKLPSSPGAYVNPRVRQEIGAVAYAPAEADLGTPASDGPRQMQVVLAQPGDGRGATTARRTSGATPLLDKMRA---GVLTSTEVMLTNRVPRWNARLQAYVLNFNGRVTQASVKNFQLVESDDTAEKIRLQFGRTSKDSFTMDFTYPLSPLQAFAITLTSFESK 825
            D+R FL T  P+ AG V+C ++R RS   KL      YS++++  +GDRFM+ + KR +   +KTS + I+M   +  R    ++G+LRA      EFQ+FD G++ +  E  +L+     GA    ++R E+GA+ Y      LG   S GPR+MQV +  P     A  A +  G   +L KM+A   G  TS   M+ N+ PRWN ++ AYVLNFNGRVT ASVKNFQLV+ DD  + I LQFGR  KD FTMDF +P++P QAFAITL+SF+SK
Sbjct:    1 DMRLFLTTPTPRRAGIVQCYIKRNRSGTNKLFP---EYSVFMK--EGDRFMMCSKKRPN---NKTSNYLISMGENDLKRNSHNYIGKLRANFAGT-EFQIFDAGWNPKGFEP-DLE---EEGA----QMRHELGAIIYT--SNVLG---SRGPRKMQVSI--PAVDEAADGADKPRGMGDILSKMKAHEYGAGTSLVYMI-NKPPRWNDQVGAYVLNFNGRVTMASVKNFQLVQPDDQ-DAILLQFGRVGKDEFTMDFQWPMTPFQAFAITLSSFDSK 252          
BLAST of jgi.p|Trimin1|165555 vs. uniprot
Match: A0A6H5LE99_9PHAE (Myosin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LE99_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 2.930e-53
Identity = 128/287 (44.60%), Postives = 170/287 (59.23%), Query Frame = 1
Query:    1 DLRAFLVTSVPKSAGTVKCCVRRQRSSL----QKLGQGGETYSLYLEG--DDGDRFMLSACKRTSGLLHKTSAFAITMRPGEFAREQGG---FLGELRATSRSADEFQLFDDGYSHEEIEKGNLKLPSSPGAYVNPRVRQEIGAVAYAPAEADLGTPAS--DGPRQMQVVLAQPGDGRGATTARRTSGATPLLDKMRAGVLTSTEV-MLTNRVPRWNARLQAYVLNFNGRVTQASVKNFQLVESDDTAEKIRLQFGRTSKDSFTMDFTYPLSPLQAFAITLTSFESK 825
            D+R FL   VP+  GTVKC +RR++  L     KL +G E Y LY+EG  D  DR++++A K+        S F +TM  GE   + G     +G L+AT+R+++EFQ+F   ++  + ++GN K              +E+ AV Y+   AD   P    +GPR+M+VVL     G  A     +S    LL +M  G L S E   L NR PRWNA++QA+VLNF+GRVTQASVKNFQLV   D  E+I LQFGRT  + FTMDF +PLSPLQA AITLTSF+ K
Sbjct: 1080 DMRGFLTQPVPRKGGTVKCFIRREKKELVRGFSKLIRGNEVYKLYMEGKGDFPDRYLMTARKKGGA---SASQFVMTMEDGEDGDDSGSSSNIVGRLKATTRTSEEFQVFSPRFTGPD-DRGNGK-------------EKEVAAVHYS---ADKMDPHGRYEGPRKMRVVLGNM-HGNNADVEAESS----LLHRMLRGSLDSLEEPCLINRNPRWNAKVQAFVLNFHGRVTQASVKNFQLVVQGDVTEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDCK 1341          
BLAST of jgi.p|Trimin1|165555 vs. uniprot
Match: C9K4U6_SACJA (Unconventional myosin n=1 Tax=Saccharina japonica TaxID=88149 RepID=C9K4U6_SACJA)

HSP 1 Score: 195 bits (496), Expect = 5.410e-53
Identity = 126/284 (44.37%), Postives = 165/284 (58.10%), Query Frame = 1
Query:    1 DLRAFLVTSVPKSAGTVKCCVRRQRSSL----QKLGQGGETYSLYLEG--DDGDRFMLSACKRTSGLLHKTSAFAITMRPGEFAREQGGFLGELRATSRSADEFQLFDDGYSHEEIEKGNLKLPSSPGAYVNPRVRQEIGAVAYAPAEADLGTPAS--DGPRQMQVVLAQPGDGRGATTARRTSGATPLLDKMRAGVLTSTEV-MLTNRVPRWNARLQAYVLNFNGRVTQASVKNFQLVESDDTAEKIRLQFGRTSKDSFTMDFTYPLSPLQAFAITLTSFESK 825
            D+R FL   VP+  GTVKC +RR++  L     K   G E Y LY+EG  D  DR++++A K+        S F I+M  GE   E    +G L+AT+R+++EFQ+F    S    ++  ++              +E+ AV Y+   AD   P    DGPR+M+VVL   G+  G  +       T LL +M  G L S E   L NR PRWNA++QA+VLNF+GRVTQASVKNFQLV   D  E+I LQFGRT  + FTMDF +PLSPLQA AITLTSF+ K
Sbjct: 1062 DMRGFLTNPVPRKGGTVKCFIRREKHELVRGLSKFIGGNEVYKLYMEGKGDFPDRYLMTARKKGGA---SASQFVISMDDGEDGSEDSHIVGRLKATTRTSEEFQVFSPTVSGAPDDRAVVR-------------EREVAAVHYS---ADKMDPHGRYDGPRKMRVVL---GNMHGNNSQVEVD--TSLLHRMLRGSLDSLEEPCLVNRNPRWNAKVQAFVLNFHGRVTQASVKNFQLVVQGDATEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDCK 1321          
BLAST of jgi.p|Trimin1|165555 vs. uniprot
Match: A0A7S3Y0Z9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0Z9_HETAK)

HSP 1 Score: 181 bits (459), Expect = 1.180e-52
Identity = 118/275 (42.91%), Postives = 165/275 (60.00%), Query Frame = 1
Query:    4 LRAFLVTSVPKSAGTVKCCVRRQRSSLQKLGQGGETYSLYLEGDDGDRFMLSACKRTSGLLHKTSAFAITMRPGEFAREQGGFLGELRATSRSADEFQLFDDGYSHEEIEKGNLKLPSSPGAYVNPRVRQEIGAVAYAPAEADLGTPASDGPRQMQVVLAQPGDGRGATTARRTSGAT-PLLDKMRAGVLTSTEVMLTNRVPRWNARLQAYVLNFNGRVTQASVKNFQLVESDDTAEKIRLQFGRTSKDSFTMDFTYPLSPLQAFAITLTSFESK 825
            +R FL+  V + AG V+C + R +S   KL      Y ++++  D +RF+L+  KR     +KTS + I+M+ G+ +RE   FLG+LRA      EFQ++DDG + ++++        + GA  + + R+E+G V YA     LG   S GPR+MQV + Q      A   R  SG    +L  ++   LT   + L N+ PRWN  + AYVLNFNGRVT ASVKNFQL+E +   E + LQFGR +KD FTMDF +PLSP QAFAITL+SF+SK
Sbjct:    1 MRRFLMEPVAREAGIVQCSIVRNKSGTNKLFPN---YQVFMKYGDQERFLLAGKKRAG---NKTSNYLISMQEGDLSRESRNFLGKLRANFVGT-EFQVYDDGVNPKDLD--------AVGASAD-QARRELGVVLYA--SNMLG---SRGPRKMQVFVPQVDPQGRAREFRPASGREGDMLGAVKREDLTDL-IYLINKPPRWNDEVGAYVLNFNGRVTMASVKNFQLIEGE-RPEDVLLQFGRVAKDKFTMDFQWPLSPFQAFAITLSSFDSK 252          
BLAST of jgi.p|Trimin1|165555 vs. uniprot
Match: A0A835YWG7_9STRA (Tub domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG7_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.810e-52
Identity = 120/281 (42.70%), Postives = 164/281 (58.36%), Query Frame = 1
Query:    4 LRAFLVTSVPKSAGTVKCCVRRQRSSLQKLGQGGETYSLYLEGDDGDRFMLSACKRTSGLLHKTSAFAITMRPGEFAREQGGFLGELRATSRSADEFQLFDDGYSHEEIEKGNLKLPSSPGAYVNPRVRQEIGAVAYAPAEADLGTPASDGPRQMQVVLAQ-PGDGRGATTARRTS----GATPLLDKMRAGVLTSTEVM--LTNRVPRWNARLQAYVLNFNGRVTQASVKNFQLVESDDTAEKIRLQFGRTSKDSFTMDFTYPLSPLQAFAITLTSFESK 825
            ++ FL +  P++AG V+C +RR ++   KL      Y +YL   DGD+F++ + +R +   +KTS + I+MR G+  R    +LG+LRA      EFQ+FD G +  ++  GN   P         + R E+G V YA     LG   S GPR+MQV + +   DG     A+ T     G  P  D M      + E +  L N+ PRWN ++ AYVLNFNGRVT ASVKNFQLV  DD  E + LQFGR +KD FTMDF +P++PLQAFAITL+SF+SK
Sbjct:    1 MKGFLTSPCPRAAGVVQCYIRRNKAGTAKLFP---EYHVYLA--DGDKFLMCSKRRPN---NKTSNYIISMRAGDLNRGSPNYLGKLRANFIGT-EFQIFDHGANPRDLLAGNFGHPE--------QARSELGVVLYA--SNVLG---SRGPRKMQVAIPKIREDGTPLALAKGTGAGAKGTMPEEDMMMHLKNHNCETLCYLINKPPRWNDQVSAYVLNFNGRVTMASVKNFQLVTPDDH-ETVVLQFGRVAKDEFTMDFQWPITPLQAFAITLSSFDSK 258          
BLAST of jgi.p|Trimin1|165555 vs. uniprot
Match: D7FIT4_ECTSI (Tub domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIT4_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 3.320e-52
Identity = 118/296 (39.86%), Postives = 173/296 (58.45%), Query Frame = 1
Query:    1 DLRAFLVTSVPKSAGTVKCCVRRQRSSLQKLGQGGETYSLYLEGDDGDRFMLSACKRTSGLLHKTSAFAITMRPGEFAREQGGFLGELRATSRSADEFQLFDDGYSHEEIEKGN---------LKLPSSPGAYVNPRVRQEIGAVAYAPAEADLGTPASDGPRQMQVVLAQPGD------------GRGATTARRTSGATPLLDKMRAGVLTSTEVMLTNRVPRWNARLQAYVLNFNGRVTQASVKNFQLVESDDTAEKIRLQFGRTSKDSFTMDFTYPLSPLQAFAITLTSFESK 825
            D++ FL++  P++AG V+C +RR ++   K+      YSL+L+  +GDRF++ + KR +   + TS + ++MR G+  R    FLG+LRA      EFQ+FDDGYS +E+  G                     N  +R+E+G V YA     LG   S GPR+MQV +    +            GRG+ TA    G +  +++++      +  M+ N+ PRWN ++ AYVLNF GRVT ASVKNFQLV ++D  ++I LQFGR +++ FTMDF YP+SP QAFAITL+SF+SK
Sbjct:   12 DMKRFLLSPCPRAAGVVQCYIRRNKTRANKIFP---EYSLFLK--EGDRFLMCSKKRPN---NATSNYLVSMRAGDLDRNSTNFLGKLRANFVGT-EFQVFDDGYSPKELGGGGGWGSXXXXXXXXXXXXXXAKNMSLREELGCVMYA--SNVLG---SRGPRKMQVAIPAVNEAGEVCKWSGLEGGRGSQTA---GGGSKAIERVKNRDYDGSLYMV-NKPPRWNDQVGAYVLNFYGRVTMASVKNFQLVSTEDF-DRIILQFGRVAREEFTMDFQYPISPFQAFAITLSSFDSK 288          
BLAST of jgi.p|Trimin1|165555 vs. uniprot
Match: A0A7S2XZ24_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ24_9STRA)

HSP 1 Score: 177 bits (450), Expect = 7.580e-51
Identity = 117/276 (42.39%), Postives = 162/276 (58.70%), Query Frame = 1
Query:    1 DLRAFLVTSVPKSAGTVKCCVRRQRSSLQKLGQGGETYSLYLEGDDG-DRFMLSACKRTSGLLHKTSAFAITMRPGEFAREQGGFLGELRATSRSADEFQLFDDGYSHEEIEKGNLKLPSSPGAYVNPRVRQEIGAVAYAPAEADLGTPASDGPRQMQVVLAQPGDGRGATTARRTSGATPLLDKMRAGVLTSTEVMLTNRVPRWNARLQAYVLNFNGRVTQASVKNFQLVESDDTAEKIRLQFGRTSKDSFTMDFTYPLSPLQAFAITLTSFESK 825
            D+R FL++  P++AG V+C ++R +S   KL      Y ++++   G +RF+L + KR     +KTS + I+M+ G+  R    FLG+LRA      EFQ++DDG +  ++E   L      G+      R E+G V YA     LG   S GPR+MQV +    D  G     RT     +L  ++     +  + L N+ PRWN  + AYVLNFNGRVT ASVKNFQL+E D+  E + LQFGR +KD FTMDF +PLSP QAFAITL+SF+SK
Sbjct:   37 DMRKFLMSPAPQAAGIVQCSIKRNKSGTNKLFP---EYEVFMKDASGVERFLLCSKKRPG---NKTSNYLISMKQGDLNRSGTNFLGKLRANFVGT-EFQIYDDGLNPRDLEPEYLG--EGQGS------RHELGVVLYA--SNMLG---SRGPRKMQVAVPMV-DEDGNVLQPRTPKDDEMLQMVKNDDFNNL-IYLINKPPRWNDEVGAYVLNFNGRVTMASVKNFQLIEQDNP-ECVLLQFGRVAKDKFTMDFQWPLSPFQAFAITLSSFDSK 289          
BLAST of jgi.p|Trimin1|165555 vs. uniprot
Match: A0A7S3ZVG1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVG1_9STRA)

HSP 1 Score: 178 bits (452), Expect = 7.530e-48
Identity = 115/277 (41.52%), Postives = 162/277 (58.48%), Query Frame = 1
Query:    1 DLRAFLVTSVPKSAGTVKCCVRRQRSSLQKLGQGGETYSLYLEGDDGDRFMLSACKRTSGLLHKTSAFAITMRPGEFAREQGGFLGELRATSRSADEFQLFDDGYSHEEIEKGNLKLPSSPGAYVNPRVRQEIGAVAYAPAEADLGTPASDGPRQMQVVLAQ-PGDGRGATTARRTSGATPLLDKMRAGVLTSTEVMLT-NRVPRWNARLQAYVLNFNGRVTQASVKNFQLVESDDTAEKIRLQFGRTSKDSFTMDFTYPLSPLQAFAITLTSFESK 825
            D+R FL T+ P+ AG V+C ++R RS   KL      Y++Y++  +GDRF++ + KR +   +KTS + I+M  G+  R    ++G+LRA      EFQ+FD G +   I+ G+ +             R E+GAV Y           S GPR+MQ  + +   DG+        S +  +L K++A      ++  T N+ PRWN ++ AYVLNFNGRVT ASVKNFQLVE D+  + + LQFGR  KD FTMDF YPL+P QAFAITL+SF+SK
Sbjct:  451 DMRKFLTTACPRRAGVVQCSIKRNRSGTNKLFP---EYAVYMK--EGDRFLMCSKKRPN---NKTSNYLISMGEGDLKRNSKNYIGKLRANFAGT-EFQVFDSGANPSLIDTGSSE-------------RCELGAVVYT-----ANVLGSRGPRKMQAAVPKLDRDGK--------SRSIDVLAKLKAQ--DKNDITYTINKPPRWNDQVGAYVLNFNGRVTMASVKNFQLVEPDEQ-DAVLLQFGRVGKDEFTMDFRYPLTPFQAFAITLSSFDSK 689          
BLAST of jgi.p|Trimin1|165555 vs. uniprot
Match: A0A7S3MBZ0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBZ0_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.310e-47
Identity = 120/291 (41.24%), Postives = 169/291 (58.08%), Query Frame = 1
Query:    1 DLRAFLVTSVPKSAGTVKCCVRRQRSSLQKLGQGGETYSLYLEGDDGDRFMLSACKRTSGLLHKTSAFAITMRPGEFAREQGGFLGELRATSRSADEFQLFDDGYSHEEIEKGNLKLPSSPGAYVNPRVRQEIGAVAYAPAEADLGTPASDGPRQMQVVLAQPG-----------DGRGATTARRTSGATP-----LLDKMRAGVLTSTEVMLTNRVPRWNARLQAYVLNFNGRVTQASVKNFQLVESDDTAEKIRLQFGRTSKDSFTMDFTYPLSPLQAFAITLTSFESK 825
            D+RAFL + +P++ G ++C +RR +S   KL      YSLYL+  +GD F++++ KR     +KTS + I+M   +  R   G+LG+LR+      EFQ+FD+G + ++ E    +  +S GA     VR E+G+V YA          S GPR+MQV L  PG           D  GATT    +G        +L +M+   L     ++ N+ PRWN ++ AYVLNFNGRVT ASVKNFQLV+ D+    + LQFGR  KD FTMD  +P+SP QAFA+TL+SF+SK
Sbjct:  385 DMRAFLCSPLPRNNGVLQCYIRRNKSGTNKLFP---IYSLYLK--EGDVFLMASKKRPK---NKTSNYLISMDQNDLNRTGRGYLGKLRSNFVGT-EFQVFDNGVNPKDSEPD--EAANSNGA-----VRCELGSVMYA-----ANVLGSRGPRKMQVAL--PGLDEHGRIMQWKDNGGATTDHHDNGGNSNADDTILTRMKDRNLRDLNYLI-NKPPRWNEQVGAYVLNFNGRVTMASVKNFQLVDPDEQ-NAVVLQFGRVGKDEFTMDLQHPISPFQAFAVTLSSFDSK 650          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165555 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YUJ6_9STRA2.750e-195100.00Tub domain-containing protein (Fragment) n=1 Tax=T... [more]
F0XZM0_AURAN5.260e-5444.24Tub domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A6H5LE99_9PHAE2.930e-5344.60Myosin motor domain-containing protein n=2 Tax=Ect... [more]
C9K4U6_SACJA5.410e-5344.37Unconventional myosin n=1 Tax=Saccharina japonica ... [more]
A0A7S3Y0Z9_HETAK1.180e-5242.91Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YWG7_9STRA2.810e-5242.70Tub domain-containing protein n=1 Tax=Tribonema mi... [more]
D7FIT4_ECTSI3.320e-5239.86Tub domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2XZ24_9STRA7.580e-5142.39Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3ZVG1_9STRA7.530e-4841.52Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3MBZ0_9STRA1.310e-4741.24Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_38contigContig_38:70178..71292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165555|e_gw1.38.129.1
BRITEko00000
KEGG koko:K19600
Descriptionphosphatidylinositol binding
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2502@1|root,KOG2502@2759|Eukaryota
Evalue8.63e-55
Seed ortholog44056.XP_009033946.1
Hectar predicted targeting categoryother localisation
TranscriptId165877
TrackFilteredModels1
ProteinId165555
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165555gene_9260Tribonema minus UTEX_B_3156 geneContig_38 70178..71292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165555Trimin1|165555|e_gw1.38.129.1Tribonema minus UTEX_B_3156 polypeptideContig_38 70178..71292 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9260_2exon_9260_2Tribonema minus UTEX_B_3156 exonContig_38 70178..70534 -
exon_9260_1exon_9260_1Tribonema minus UTEX_B_3156 exonContig_38 70822..71292 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9260CDS_9260Tribonema minus UTEX_B_3156 CDSContig_38 70822..71292 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9260 ID=mRNA_9260|Name=jgi.p|Trimin1|165555|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=828bp|location=Sequence derived from alignment at Contig_38:70178..71292- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACCTACGCGCATTCCTCGTGACCAGCGTGCCCAAATCTGCGGGCACGGT
CAAGTGCTGCGTCAGGCGGCAGCGCAGCAGCCTGCAGAAGCTGGGCCAGG
GTGGCGAGACCTACAGCCTGTACCTGGAAGGCGATGATGGCGATCGCTTC
ATGCTGTCAGCCTGCAAGCGCACCAGCGGACTGCTTCACAAGACCAGTGC
CTTTGCCATCACCATGCGGCCCGGGGAGTTTGCGAGGGAGCAGGGCGGGT
TTCTGGGAGAGCTGCGCGCAACTTCGCGATCCGCTGATGAGTTCCAGCTG
TTTGATGACGGCTACAGTCATGAGGAGATTGAGAAGGGGAACTTGAAGCT
GCCGTCATCGCCTGGTGCGTATGTCAATCCGCGCGTTCGGCAGGAGATTG
GTGCGGTGGCGTATGCGCCTGCAGAGGCAGACCTTGGCACGCCTGCGAGC
GACGGTCCGAGGCAGATGCAGGTGGTGCTCGCTCAACCCGGCGATGGCCG
CGGCGCCACAACAGCAAGGCGCACCAGCGGCGCGACGCCACTGCTGGATA
AGATGCGAGCGGGCGTGCTGACCAGCACAGAGGTGATGCTCACAAACAGG
GTGCCACGCTGGAACGCACGCCTGCAGGCCTATGTACTCAACTTCAATGG
GCGCGTCACCCAGGCCAGCGTCAAGAACTTCCAGCTGGTGGAGTCTGATG
ACACTGCGGAGAAGATCCGGCTGCAGTTTGGACGCACCAGCAAGGACTCC
TTCACCATGGACTTCACGTATCCGCTGAGCCCGCTGCAGGCATTTGCGAT
TACGCTCACCAGCTTTGAGAGCAAGTAG
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protein sequence of jgi.p|Trimin1|165555

>Trimin1|165555|e_gw1.38.129.1 ID=Trimin1|165555|e_gw1.38.129.1|Name=jgi.p|Trimin1|165555|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=276bp
DLRAFLVTSVPKSAGTVKCCVRRQRSSLQKLGQGGETYSLYLEGDDGDRF
MLSACKRTSGLLHKTSAFAITMRPGEFAREQGGFLGELRATSRSADEFQL
FDDGYSHEEIEKGNLKLPSSPGAYVNPRVRQEIGAVAYAPAEADLGTPAS
DGPRQMQVVLAQPGDGRGATTARRTSGATPLLDKMRAGVLTSTEVMLTNR
VPRWNARLQAYVLNFNGRVTQASVKNFQLVESDDTAEKIRLQFGRTSKDS
FTMDFTYPLSPLQAFAITLTSFESK*
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mRNA from alignment at Contig_38:70178..71292-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9260 ID=mRNA_9260|Name=jgi.p|Trimin1|165555|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1115bp|location=Sequence derived from alignment at Contig_38:70178..71292- (Tribonema minus UTEX_B_3156 )
GACCTACGCGCATTCCTCGTGACCAGCGTGCCCAAATCTGCGGGCACGGT CAAGTGCTGCGTCAGGCGGCAGCGCAGCAGCCTGCAGAAGCTGGGCCAGG GTGGCGAGACCTACAGCCTGTACCTGGAAGGCGATGATGGCGATCGCTTC ATGCTGTCAGCCTGCAAGCGCACCAGCGGACTGCTTCACAAGACCAGTGC CTTTGCCATCACCATGCGGCCCGGGGAGTTTGCGAGGGAGCAGGGCGGGT TTCTGGGAGAGCTGCGCGCAACTTCGCGATCCGCTGATGAGTTCCAGCTG TTTGATGACGGCTACAGTCATGAGGAGATTGAGAAGGGGAACTTGAAGCT GCCGTCATCGCCTGGTGCGTATGTCAATCCGCGCGTTCGGCAGGAGATTG GTGCGGTGGCGTATGCGCCTGCAGAGGCAGACCTTGGCACGCCTGCGAGC GACGGTCCGAGGCAGATGCAGGTCAGTGCTCAACACTAGCACACACAGAT CAAGCTATATTGTCTGTTGATTCATCTGGCTCAGGTGTGATGGCTGATGT TCATACGCATGTGCGCTTGCCCTTGGCACGCGTTCAAAGTAGCTTGCATG CATGCAATTAGAGGAGGAGAGTCACTTGCATCGAACCGCTTACGTGAAAC TTGAAGTACGCCCTAGCTCTGCAGTGACTCTCCCATGTTGAGCGCTCTCA CACTGACTCTTGCTCACTTTCCCCACGACGTGTGCATGTGTCACATGTGC ATCATCAGGTGGTGCTCGCTCAACCCGGCGATGGCCGCGGCGCCACAACA GCAAGGCGCACCAGCGGCGCGACGCCACTGCTGGATAAGATGCGAGCGGG CGTGCTGACCAGCACAGAGGTGATGCTCACAAACAGGGTGCCACGCTGGA ACGCACGCCTGCAGGCCTATGTACTCAACTTCAATGGGCGCGTCACCCAG GCCAGCGTCAAGAACTTCCAGCTGGTGGAGTCTGATGACACTGCGGAGAA GATCCGGCTGCAGTTTGGACGCACCAGCAAGGACTCCTTCACCATGGACT TCACGTATCCGCTGAGCCCGCTGCAGGCATTTGCGATTACGCTCACCAGC TTTGAGAGCAAGTAG
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Coding sequence (CDS) from alignment at Contig_38:70178..71292-

>mRNA_9260 ID=mRNA_9260|Name=jgi.p|Trimin1|165555|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=828bp|location=Sequence derived from alignment at Contig_38:70178..71292- (Tribonema minus UTEX_B_3156 )
GACCTACGCGCATTCCTCGTGACCAGCGTGCCCAAATCTGCGGGCACGGT
CAAGTGCTGCGTCAGGCGGCAGCGCAGCAGCCTGCAGAAGCTGGGCCAGG
GTGGCGAGACCTACAGCCTGTACCTGGAAGGCGATGATGGCGATCGCTTC
ATGCTGTCAGCCTGCAAGCGCACCAGCGGACTGCTTCACAAGACCAGTGC
CTTTGCCATCACCATGCGGCCCGGGGAGTTTGCGAGGGAGCAGGGCGGGT
TTCTGGGAGAGCTGCGCGCAACTTCGCGATCCGCTGATGAGTTCCAGCTG
TTTGATGACGGCTACAGTCATGAGGAGATTGAGAAGGGGAACTTGAAGCT
GCCGTCATCGCCTGGTGCGTATGTCAATCCGCGCGTTCGGCAGGAGATTG
GTGCGGTGGCGTATGCGCCTGCAGAGGCAGACCTTGGCACGCCTGCGAGC
GACGGTCCGAGGCAGATGCAGGTGGTGCTCGCTCAACCCGGCGATGGCCG
CGGCGCCACAACAGCAAGGCGCACCAGCGGCGCGACGCCACTGCTGGATA
AGATGCGAGCGGGCGTGCTGACCAGCACAGAGGTGATGCTCACAAACAGG
GTGCCACGCTGGAACGCACGCCTGCAGGCCTATGTACTCAACTTCAATGG
GCGCGTCACCCAGGCCAGCGTCAAGAACTTCCAGCTGGTGGAGTCTGATG
ACACTGCGGAGAAGATCCGGCTGCAGTTTGGACGCACCAGCAAGGACTCC
TTCACCATGGACTTCACGTATCCGCTGAGCCCGCTGCAGGCATTTGCGAT
TACGCTCACCAGCTTTGAGAGCAAGTAG
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