mRNA_9308 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165515
Unique NamemRNA_9308
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|165515 vs. uniprot
Match: A0A836CDY7_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDY7_9STRA)

HSP 1 Score: 546 bits (1407), Expect = 7.950e-197
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 1
Query:    1 MAVARLKSTLSGTAGALLDVFSAEKLPRSDVSDYHDVEQRVQSVLPPGAPPVVMRLVSNCHSAVSIPAPFQHTFCAAPGNNPRKRMLYTSKALSLFQLIDGAWVMSFMVYAHEYGHDAPACNRGRVYVSYLDSVPFLQPYSSRSAAYQMKLVAYFDWVRRRGFGTVHLCSAPSGDDGRYVFWCHPEHHRTRNEDGLRAWYCEVAKQCQSHGIIAASSGLYECGHREEQPALASDDSSRGTTSDERPVLPPIFKGDFWIADL 783
            MAVARLKSTLSGTAGALLDVFSAEKLPRSDVSDYHDVEQRVQSVLPPGAPPVVMRLVSNCHSAVSIPAPFQHTFCAAPGNNPRKRMLYTSKALSLFQLIDGAWVMSFMVYAHEYGHDAPACNRGRVYVSYLDSVPFLQPYSSRSAAYQMKLVAYFDWVRRRGFGTVHLCSAPSGDDGRYVFWCHPEHHRTRNEDGLRAWYCEVAKQCQSHGIIAASSGLYECGHREEQPALASDDSSRGTTSDERPVLPPIFKGDFWIADL
Sbjct:    1 MAVARLKSTLSGTAGALLDVFSAEKLPRSDVSDYHDVEQRVQSVLPPGAPPVVMRLVSNCHSAVSIPAPFQHTFCAAPGNNPRKRMLYTSKALSLFQLIDGAWVMSFMVYAHEYGHDAPACNRGRVYVSYLDSVPFLQPYSSRSAAYQMKLVAYFDWVRRRGFGTVHLCSAPSGDDGRYVFWCHPEHHRTRNEDGLRAWYCEVAKQCQSHGIIAASSGLYECGHREEQPALASDDSSRGTTSDERPVLPPIFKGDFWIADL 261          
BLAST of jgi.p|Trimin1|165515 vs. uniprot
Match: A0A835YPS5_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS5_9STRA)

HSP 1 Score: 275 bits (703), Expect = 1.900e-90
Identity = 132/207 (63.77%), Postives = 157/207 (75.85%), Query Frame = 1
Query:   61 FSAEKLPRSDVSDYHDVEQRVQSVLPPGAPPVVMRLVSNCHSAVSIPAPFQHTFCAAPGNNPRKRMLYTSKALSLFQLIDGAWVMSFMVYAHEYGHDAPACNRGRVYVSYLDSVPFLQPYSSRSAAYQMKLVAYFDWVRRRGFGTVHLCSAPSGD--DGRYVFWCHPEHHRTRNEDGLRAWYCEVAKQCQSHGIIAASSGLYECGHR 675
            +SAEKLPRSDV DY  VE+ VQSVLP GAPP+ +R VSNC  A SIP P Q TFCAAPG +  + +LYTSKAL LFQLIDGAWVMSFM+Y +EYG DAPACNRGRVY+SYLDSVP++QPY+ RS  Y+  L AYFDWVRRRGF TVHL SAP+    +  Y+ WCHP+HH T ++  LR WY ++A QCQ  GI++A + LY    R
Sbjct:    1 YSAEKLPRSDVGDY--VERCVQSVLPAGAPPIAVRFVSNCQKATSIPPPMQATFCAAPGVDLPRSILYTSKALCLFQLIDGAWVMSFMLYTYEYGDDAPACNRGRVYLSYLDSVPYIQPYTCRSVVYKTVLAAYFDWVRRRGFSTVHLWSAPASTLREFAYICWCHPQHHATLDQPALRQWYSDIAGQCQLRGIVSAVTDLYASSFR 205          
BLAST of jgi.p|Trimin1|165515 vs. uniprot
Match: A0A835YQL1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQL1_9STRA)

HSP 1 Score: 262 bits (669), Expect = 2.760e-85
Identity = 126/207 (60.87%), Postives = 154/207 (74.40%), Query Frame = 1
Query:   61 FSAEKLPRSDVSDYHDVEQRVQSVLPPGAPPVVMRLVSNCHSAVSIPAPFQHTFCAAPGNNPRKRMLYTSKALSLFQLIDGAWVMSFMVYAHEYGHDAPACNRGRVYVSYLDSVPFLQPYSSRSAAYQMKLVAYFDWVRRRGFGTVHLCSAPSGD--DGRYVFWCHPEHHRTRNEDGLRAWYCEVAKQCQSHGIIAASSGLYECGHR 675
            +SAEKLP SDV DY  +E  VQSVLP GAPP+ +RLVSNC  A SIP P Q TFC APG +    +LYTSKAL LFQLI+GAWVMS M+Y++EYG D+PACNRGRVY+SYLDSV ++QPY+ RS  Y+  L AYFDWVRRRGF TVHL SAP+ +  +  Y+ WCHP+HH T ++  LR WY ++ +QCQ  GII+A + LY    R
Sbjct:    1 YSAEKLPWSDVGDY--IESCVQSVLPAGAPPIAVRLVSNCQKATSIPPPMQATFCTAPGVDLPPSILYTSKALCLFQLINGAWVMSLMLYSYEYGDDSPACNRGRVYLSYLDSVTYIQPYTCRSVVYKTVLAAYFDWVRRRGFSTVHLWSAPASNVKEFAYICWCHPQHHATLDQTALRQWYGDIVEQCQRRGIISAVTHLYASSFR 205          
BLAST of jgi.p|Trimin1|165515 vs. uniprot
Match: A0A835YIA2_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIA2_9STRA)

HSP 1 Score: 227 bits (579), Expect = 9.900e-65
Identity = 127/275 (46.18%), Postives = 158/275 (57.45%), Query Frame = 1
Query:   55 DVFSAEKLPRSDVSDYHDVEQRVQSVLPPGAPPVVMRLVSNCHSAVSIPAPFQHTFCAAPGNNPRKRMLYTSKALSLFQLIDGAWVMSFMVYAHEYGHDAPACNRGRVYVSYLDSVPFLQPYSSRSAAYQMKLVAYFDWVRRRGFGTVHLCSAPSGDDGRYVFWCHPEHHRTRNEDGLRAWYCEVAKQCQSHGII----AASSGLYECGHREEQPAL---ASD-------------------------DSSRGTTSDERPVLPPIFKGDFWIADL 783
            DV+SAE+LPRSDV D+  +E RV++  P  APP+ +RLVSN   A+ +P P   TF AAPG      + Y+SKAL +FQ I+G WV+ F++Y  EY  DAPACNRGR Y+SY+DS    QP S+R+AAY+  +VAY DWVRRRGFG +HL SAP  +   YV WCHPEH  T   D LR WY  VA +CQ+ GI+    A  S LY    +    AL   A+D                         D      S   PVLPP FKGD+W   L
Sbjct:  495 DVYSAERLPRSDVGDF--MELRVKNTQPADAPPLAVRLVSNTKLAMLVPPPVWATFRAAPGQPLPHVIPYSSKALCMFQQINGLWVLCFVMYVQEYSGDAPACNRGRAYISYIDSAAHWQPSSARTAAYKEFVVAYADWVRRRGFGWIHLWSAPPQEGASYVLWCHPEHQATPEPDMLRRWYHAVASRCQALGIVRNFTAERSNLYHASFQVIDNALNAAAADXXXXXXXXXXXXXXXXXXXXXXXXSDMEAAPISIAPPVLPPFFKGDYWPQQL 767          
BLAST of jgi.p|Trimin1|165515 vs. uniprot
Match: A0A835Z7S7_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S7_9STRA)

HSP 1 Score: 187 bits (474), Expect = 8.000e-56
Identity = 99/205 (48.29%), Postives = 130/205 (63.41%), Query Frame = 1
Query:   61 FSAEKLPRSDVSDYHDVEQRVQSVLPPGAPPVVMRLVSNCHSAVSIPAPFQHTFCAA----PGNNPRKRML-----YTSKALSLFQLIDGAWVMSFMVYAHEYGHDAPACNRGRVYVSYLDSVPFLQPYSSRSAAYQMKLVAYFDWVRRRGFGTVHLCSAPSGDDGRYVFWCHPEHH-----RTRNEDGLRAWYCEVAKQCQSHG 633
            +SAE+LPRSD+ DY  +EQRV++  P G  P+ +RLV+N   A+ +P P + TFCAA    PG   ++  L     YTSK L LFQ ++G WV+ F+VY  EYG DAPACNR R Y++Y+DS+   QP S RSAAY+  LV Y DWVR R F  VHL SAP  +   YV WC P+H      RT++   LR WY  +A+ C++ G
Sbjct:    1 YSAEQLPRSDIGDY--IEQRVKATQPAGTSPIAVRLVTNKQLAMVVPPPIRATFCAAARELPGGIVQRDPLPEAIEYTSKVLCLFQEVNGLWVLLFIVYTQEYGADAPACNRARAYIAYVDSIAHWQPCSRRSAAYKEMLVGYIDWVRLRSFRRVHLWSAPPQEGDSYVLWCRPQHQPPPPPRTQHA-WLRQWYHSIARGCEALG 202          
BLAST of jgi.p|Trimin1|165515 vs. uniprot
Match: A0A835ZGH1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH1_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.050e-45
Identity = 91/249 (36.55%), Postives = 139/249 (55.82%), Query Frame = 1
Query:   58 VFSAEKLPRSDVSDY---HDVEQRVQSVLPPGAPPVVMRLVSNCHSAVSIPAPFQHTFC----AAPGNNPRKRMLYTSKALSLFQLIDGAWVMSFMVYAHEYGHDAPACNRGRVYVSYLDSVPFLQPYSSRSAAYQMKLVAYFDWVRRRGFGTVHLCSAPSGDDGRYVFWCHPEHHRTRNEDGLRAWYCEVAKQCQSHGIIAASSGLYECGHREEQPALASDDSSRGTTSDERPVLPPIFKGDFWIADL 783
            V+SA  LPR  +SD+   H + +  +  +PP    + +R+VS+  +   + +  + TF     A PG    + + Y SKAL +FQ IDGA V  F +Y  E+G DAP+ N  RVYV+YLDSV + +P ++R+  Y   L AY DW RRRGF T H+ S P      ++FW HPEH +T   + L  WY  + ++C++ G++ A   L+    + +  A A DD         RP +PP+F GD+W+ ++
Sbjct:  399 VYSAAALPRCAMSDFIELHVLRRLDELGMPPPPGSISIRVVSSITATHDVSSVVRRTFKPGGGAPPGACIPRELSYASKALCMFQCIDGAEVCLFSMYVQEHGADAPSFNARRVYVAYLDSVEYFRPRAARTHVYHEILAAYLDWARRRGFRTAHIWSCPPQRGNNFIFWAHPEHQKTPTRERLMTWYRLMLRRCEALGVVHAVENLHTTHFQADAAAAALDDP--------RPPVPPLFDGDYWLDEI 639          
BLAST of jgi.p|Trimin1|165515 vs. uniprot
Match: A0A836CF44_9STRA (Histone acetyltransferase (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF44_9STRA)

HSP 1 Score: 162 bits (409), Expect = 3.780e-45
Identity = 87/201 (43.28%), Postives = 123/201 (61.19%), Query Frame = 1
Query:   37 TAGALLDVFSAEKLPRSDVSDYHDVEQRVQSVLPPGAPPVVMRLVSNCHSAVSIPAPFQHTFCA-APGNNPRKRMLYTSKALSLFQLIDGAWVMSFMVYAHEYGHDAPACNRGRVYVSYLDSVPFLQPYSSRSAAYQMKLVAYFDWVRRRGFGTVHLCSAPSGDDGRYVFWCHPEHHRTRNEDGLRAWYCEVAKQCQSHGI 636
            T+   L  + A+ LP S V D H +E++   +LP G+P VV+R+++N   A  +PA  Q TF   A G++P   + YT+K + +FQ +DG WV+ F++ AHEYG DAP  NRGRVY+SYLDSVPF+ P  +R+A +Q  L AY D  RRRGF   HL     G+  +Y+F   P H +T ++ GL AW   +A    + GI
Sbjct:   48 TSTTALQPYCAKSLP-SSVLDRH-LEEQANRLLPSGSPKVVVRMLANTRRAFYVPAQVQATFAVDATGSSPPPTIPYTAKTIGVFQELDGVWVLFFVLMAHEYGADAPLANRGRVYISYLDSVPFMWPCHARTALFQGVLHAYLDCSRRRGFTKAHLWVCAPGEGSQYLFLQRPPHQKTPDQKGLEAWNGNMASGAVAAGI 246          
BLAST of jgi.p|Trimin1|165515 vs. uniprot
Match: A0A6H5L4V8_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V8_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.370e-42
Identity = 101/278 (36.33%), Postives = 139/278 (50.00%), Query Frame = 1
Query:   31 SGTAGA-LLDVFSAEKLPRSDVSDYHDVEQRVQSVLPP-----GAPPVVMRLVSNCHSAVSIPAPFQHTFCAAPG-------NNPRKRMLYTSKALSLFQLIDGAWVMSFMVYAHEYGHDAPACNRGRVYVSYLDSVPFLQPYSSRSAAYQMKLVAYFDWVRRRGFGTVHLCSAPSGDDGRYVFWCHPEHHRTRNEDGLRAWYCEVAKQCQSHGIIAASS-------------GLYECGHREEQPALASDDSSRGTTSDERPVLPP--IFKGDFWIAD 780
            SGTAGA  LDV++A  LP + +S Y  +E RV+  L        A  + +RL+SN  +   + +  + TFC   G       N   + + Y SKALS+FQ +DG  V  F +Y  EYG DAP  N  R Y+SYLDSV + +P   R+A Y   LVAY DW+RRRGF   H+ S P      ++FWCHP H +T   D L  WY  + K+    G+ A  +             G+     R    A A+   +     D+ P+ P   IF+GDFW  +
Sbjct: 1354 SGTAGADSLDVYAASSLPHTPLSRY--IESRVRQRLAKLEDEAAASTLSIRLISNVEATCEVHSVLRETFCCKDGLGVGPNKNEVPELLKYRSKALSMFQRVDGVEVCLFSMYVQEYGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNMLKRAVQLGVAAKVTTLDKTHFTEVERIGILLKNRRTSAAASAAATLAGVKGPDDLPLRPEAMIFEGDFWAEE 1629          
BLAST of jgi.p|Trimin1|165515 vs. uniprot
Match: A0A8J2T1L7_9STRA (Histone acetyltransferase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1L7_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.650e-34
Identity = 78/224 (34.82%), Postives = 115/224 (51.34%), Query Frame = 1
Query:  145 APPVVMRLVSNCHSAVSIPAPFQHTFCAAPGNNPRKRMLYTSKALSLFQLIDGAWVMSFMVYAHEYGHDAPACNRGRVYVSYLDSVPFLQPYSSRSAAYQMKLVAYFDWVRRRGFGTVHLCSAPSGDDGRYVFWCHPEHHRTRNEDGLRAWYCEVAKQCQSHGIIAASSGLY-EC------------GHREEQPALASD--DSSRGTTSDERPVLPPIFKGDFW 771
            AP V ++LVS     +  P   +  F    G    + + Y S+A+ LFQ +DG  VM F +Y HE+   A   + GRVYV+YLDSV + +P ++R+  Y   LVAY DW R RGF   H+ + P      ++FWCHP+H RT + + L  WY  +  +  + G +   + LY EC                ++PA+  D  D+  G  +   PV PP+F GD+W
Sbjct:  404 APTVAVKLVSCVPRRLRAPDILREHFRGRDGAALPEFLKYESRAVVLFQKLDGCDVMVFSMYVHEFPTAAGGPSAGRVYVAYLDSVEYFRPRTARTEVYHELLVAYLDWSRGRGFDAAHIWACPPQRGNNFIFWCHPQHQRTPSRERLTEWYRAMVARATATGAVRRVATLYDECFAAWDTTRRRHKPQHAQRPAVWVDNADADEGAPAPRLPVCPPVFDGDYW 627          
BLAST of jgi.p|Trimin1|165515 vs. uniprot
Match: A0A1Z5KD26_FISSO (Histone acetyltransferase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KD26_FISSO)

HSP 1 Score: 140 bits (352), Expect = 5.790e-34
Identity = 85/251 (33.86%), Postives = 127/251 (50.60%), Query Frame = 1
Query:   61 FSAEKLPRSDVSDYHDVEQRVQSVLP--PGAPPVV-MRLVSNCHSAVSIPAPFQHTFCAAPGNN-PRKRMLYTSKALSLFQLIDGAWVMSFMVYAHEY-GHD------APACNRGRVYVSYLDSVPFLQPYSSRSAAYQMKLVAYFDWVRRRGFGTVHLCSAPSGDDGRYVFWCHPEHHRTRNEDGLRAWYCEVAKQCQSHGIIAASSGLYECGHREEQPALASDDSSRGTTSDERPVLPPIFKGDFWIAD 780
            ++A+ LP +  S +   + R + +LP  P A   V +R++S+C  A ++P   +  FC       P +R+ Y SKAL LFQ IDG  V  F +Y  EY G D      +P   + RVY++Y+DSV   QP S R+  YQ  LV+Y    R+RG+ T H+ + P      +VFW HP   RT   + L AWY +   +    G++     LYE   +     L S D+  G+  +     PP+  GDFW+ +
Sbjct:  456 YNADSLPETSESVFLQSKVRERMILPDYPNAEKTVTVRVISDCARAFNVPDVIRKHFCMPTTQGMPPQRVHYRSKALVLFQKIDGLDVCIFCMYVQEYDGRDEYEEASSPVDTKKRVYIAYIDSVEHFQPRSCRTKVYQELLVSYLASARKRGYDTAHIWACPPSRGNSFVFWNHPASQRTPTRERLVAWYHDALSRAVECGVVTDIQSLYESEFQGRLEPLESTDAVLGSKME----CPPLLDGDFWVEE 702          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165515 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CDY7_9STRA7.950e-197100.00Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
A0A835YPS5_9STRA1.900e-9063.77Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A835YQL1_9STRA2.760e-8560.87Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A835YIA2_9STRA9.900e-6546.18Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
A0A835Z7S7_9STRA8.000e-5648.29Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A835ZGH1_9STRA1.050e-4536.55Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A836CF44_9STRA3.780e-4543.28Histone acetyltransferase (Fragment) n=2 Tax=Tribo... [more]
A0A6H5L4V8_9PHAE1.370e-4236.33Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
A0A8J2T1L7_9STRA1.650e-3434.82Histone acetyltransferase n=2 Tax=Pelagomonas calc... [more]
A0A1Z5KD26_FISSO5.790e-3433.86Histone acetyltransferase n=2 Tax=Fistulifera sola... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_38contigContig_38:478142..478927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165515|e_gw1.38.104.1
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
KEGG koko:K04498
EC2.3.1.48
Descriptionhistone acetyltransferase activity
COG categoryBK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5076@1|root,KOG1474@2759|Eukaryota,KOG1778@2759|Eukaryota
Evalue1.01e-34
Seed ortholog157072.XP_008874949.1
Hectar predicted targeting categoryother localisation
TranscriptId165837
TrackFilteredModels1
ProteinId165515
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165515gene_9308Tribonema minus UTEX_B_3156 geneContig_38 478142..478927 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9308_1exon_9308_1Tribonema minus UTEX_B_3156 exonContig_38 478142..478927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9308CDS_9308Tribonema minus UTEX_B_3156 CDSContig_38 478142..478927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165515Trimin1|165515|e_gw1.38.104.1Tribonema minus UTEX_B_3156 polypeptideContig_38 478142..478927 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9308 ID=mRNA_9308|Name=jgi.p|Trimin1|165515|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=786bp|location=Sequence derived from alignment at Contig_38:478142..478927+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTGGCCCGCCTCAAGAGCACACTTAGCGGCACTGCAGGAGCACT
GCTTGACGTGTTCTCAGCGGAGAAGCTACCGCGCTCGGATGTAAGCGACT
ATCATGATGTAGAGCAGCGCGTGCAGAGCGTGCTCCCCCCAGGTGCTCCG
CCGGTTGTCATGAGGCTGGTCAGCAACTGCCACAGTGCAGTCAGCATACC
GGCACCCTTCCAGCACACATTCTGCGCTGCACCCGGAAACAACCCGCGGA
AGAGAATGCTGTATACCAGCAAAGCCCTGAGCCTGTTTCAGCTCATCGAC
GGCGCTTGGGTCATGAGCTTCATGGTGTATGCGCATGAGTACGGCCACGA
TGCACCAGCCTGCAACCGCGGGCGTGTGTATGTGTCGTACCTCGACAGCG
TGCCGTTTTTGCAGCCCTACAGCAGCCGTTCAGCAGCATACCAGATGAAG
CTGGTCGCGTACTTCGACTGGGTGAGACGGCGGGGGTTCGGCACCGTGCA
CCTGTGCAGTGCTCCGTCTGGCGACGATGGCAGGTACGTGTTCTGGTGTC
ATCCTGAGCACCACCGCACCCGCAATGAGGATGGACTGCGGGCATGGTAC
TGCGAAGTAGCCAAGCAGTGCCAGAGCCACGGGATCATCGCGGCGTCCAG
TGGTCTGTACGAGTGCGGCCATCGGGAAGAGCAGCCCGCCCTTGCCAGCG
ATGACAGCAGCCGTGGGACCACAAGCGACGAGCGCCCTGTGCTCCCCCCG
ATTTTCAAAGGCGACTTCTGGATTGCGGATCTGTGA
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protein sequence of jgi.p|Trimin1|165515

>Trimin1|165515|e_gw1.38.104.1 ID=Trimin1|165515|e_gw1.38.104.1|Name=jgi.p|Trimin1|165515|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=262bp
MAVARLKSTLSGTAGALLDVFSAEKLPRSDVSDYHDVEQRVQSVLPPGAP
PVVMRLVSNCHSAVSIPAPFQHTFCAAPGNNPRKRMLYTSKALSLFQLID
GAWVMSFMVYAHEYGHDAPACNRGRVYVSYLDSVPFLQPYSSRSAAYQMK
LVAYFDWVRRRGFGTVHLCSAPSGDDGRYVFWCHPEHHRTRNEDGLRAWY
CEVAKQCQSHGIIAASSGLYECGHREEQPALASDDSSRGTTSDERPVLPP
IFKGDFWIADL*
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mRNA from alignment at Contig_38:478142..478927+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9308 ID=mRNA_9308|Name=jgi.p|Trimin1|165515|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=786bp|location=Sequence derived from alignment at Contig_38:478142..478927+ (Tribonema minus UTEX_B_3156 )
ATGGCTGTGGCCCGCCTCAAGAGCACACTTAGCGGCACTGCAGGAGCACT GCTTGACGTGTTCTCAGCGGAGAAGCTACCGCGCTCGGATGTAAGCGACT ATCATGATGTAGAGCAGCGCGTGCAGAGCGTGCTCCCCCCAGGTGCTCCG CCGGTTGTCATGAGGCTGGTCAGCAACTGCCACAGTGCAGTCAGCATACC GGCACCCTTCCAGCACACATTCTGCGCTGCACCCGGAAACAACCCGCGGA AGAGAATGCTGTATACCAGCAAAGCCCTGAGCCTGTTTCAGCTCATCGAC GGCGCTTGGGTCATGAGCTTCATGGTGTATGCGCATGAGTACGGCCACGA TGCACCAGCCTGCAACCGCGGGCGTGTGTATGTGTCGTACCTCGACAGCG TGCCGTTTTTGCAGCCCTACAGCAGCCGTTCAGCAGCATACCAGATGAAG CTGGTCGCGTACTTCGACTGGGTGAGACGGCGGGGGTTCGGCACCGTGCA CCTGTGCAGTGCTCCGTCTGGCGACGATGGCAGGTACGTGTTCTGGTGTC ATCCTGAGCACCACCGCACCCGCAATGAGGATGGACTGCGGGCATGGTAC TGCGAAGTAGCCAAGCAGTGCCAGAGCCACGGGATCATCGCGGCGTCCAG TGGTCTGTACGAGTGCGGCCATCGGGAAGAGCAGCCCGCCCTTGCCAGCG ATGACAGCAGCCGTGGGACCACAAGCGACGAGCGCCCTGTGCTCCCCCCG ATTTTCAAAGGCGACTTCTGGATTGCGGATCTGTGA
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Coding sequence (CDS) from alignment at Contig_38:478142..478927+

>mRNA_9308 ID=mRNA_9308|Name=jgi.p|Trimin1|165515|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=786bp|location=Sequence derived from alignment at Contig_38:478142..478927+ (Tribonema minus UTEX_B_3156 )
ATGGCTGTGGCCCGCCTCAAGAGCACACTTAGCGGCACTGCAGGAGCACT
GCTTGACGTGTTCTCAGCGGAGAAGCTACCGCGCTCGGATGTAAGCGACT
ATCATGATGTAGAGCAGCGCGTGCAGAGCGTGCTCCCCCCAGGTGCTCCG
CCGGTTGTCATGAGGCTGGTCAGCAACTGCCACAGTGCAGTCAGCATACC
GGCACCCTTCCAGCACACATTCTGCGCTGCACCCGGAAACAACCCGCGGA
AGAGAATGCTGTATACCAGCAAAGCCCTGAGCCTGTTTCAGCTCATCGAC
GGCGCTTGGGTCATGAGCTTCATGGTGTATGCGCATGAGTACGGCCACGA
TGCACCAGCCTGCAACCGCGGGCGTGTGTATGTGTCGTACCTCGACAGCG
TGCCGTTTTTGCAGCCCTACAGCAGCCGTTCAGCAGCATACCAGATGAAG
CTGGTCGCGTACTTCGACTGGGTGAGACGGCGGGGGTTCGGCACCGTGCA
CCTGTGCAGTGCTCCGTCTGGCGACGATGGCAGGTACGTGTTCTGGTGTC
ATCCTGAGCACCACCGCACCCGCAATGAGGATGGACTGCGGGCATGGTAC
TGCGAAGTAGCCAAGCAGTGCCAGAGCCACGGGATCATCGCGGCGTCCAG
TGGTCTGTACGAGTGCGGCCATCGGGAAGAGCAGCCCGCCCTTGCCAGCG
ATGACAGCAGCCGTGGGACCACAAGCGACGAGCGCCCTGTGCTCCCCCCG
ATTTTCAAAGGCGACTTCTGGATTGCGGATCTGTGA
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