mRNA_9294 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165506
Unique NamemRNA_9294
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: A0A835Z872_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z872_9STRA)

HSP 1 Score: 305 bits (780), Expect = 1.050e-103
Identity = 159/174 (91.38%), Postives = 162/174 (93.10%), Query Frame = 1
Query:    1 MGDPGPDAVKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRGVSAELSTRDLYTSEMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALARERGYHLFFLRLNASDFGPAYQRRRLFVV 522
            MGDPGPDAVKV DLCAGIGGFSRAVQMAGGRVVYAMD NAAAKPVYDANRGV AELSTRDLYTSEMWE+LAASGAGMVVTGPPCT+   ARLVRADKGERREG RAALTPLLVHQLTQMQMPLVV ENVVSIESMTRGQ AFALARERGYH+ FLRL ASDFGP YQRRRLFVV
Sbjct:    1 MGDPGPDAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREG-RAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYHICFLRLYASDFGPPYQRRRLFVV 173          
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: A0A835YZ35_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ35_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.220e-35
Identity = 79/172 (45.93%), Postives = 95/172 (55.23%), Query Frame = 1
Query:    7 DPGPDAVKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRGVSAELSTRDLYTSEMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALARERGYHLFFLRLNASDFGPAYQRRRLFVV 522
            DPGPDA KVADLCAG+GGFSRAVQ+AGGRVVYAMD+NA+ KP+YDANRG  AEL+  DLY  + W  L +SGAG+ V G PC D++ AR V A+KG                                                   YH+ FLR+ ASD GP Y++ RL  V
Sbjct:  440 DPGPDAPKVADLCAGLGGFSRAVQLAGGRVVYAMDNNASVKPLYDANRGAGAELTISDLYLPDTWTALVSSGAGVAVAGTPCRDWSSARHVDANKG---------------------------------------------------YHVSFLRMRASDHGPPYKKHRLIAV 560          
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: UPI000EFA37C4 (DNA (cytosine-5-)-methyltransferase n=1 Tax=Brucella intermedia TaxID=94625 RepID=UPI000EFA37C4)

HSP 1 Score: 63.9 bits (154), Expect = 8.670e-9
Identity = 55/167 (32.93%), Postives = 79/167 (47.31%), Query Frame = 1
Query:   25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRGVSA-ELSTRDLYTSEMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALARERGYHLFFLRLNASDFGPAYQRRRLFVV 522
            ++V DL  G GG S  ++ +G  VV A D    A   Y AN G  A +   +D+    +   +A     M+V GPPC D++ A       GER+EG  A +T      +   +    + ENV   ++      A A+    GY L   +L+AS +G A  RRRLFVV
Sbjct:   10 LRVVDLFCGAGGLSLGLKNSGLDVVQAYDAWQPAIDTYRANVGHHAWKHDLKDILG--VGSMIAQLQPDMIVGGPPCQDYSIA-------GERQEGQNAVMTKAFAMMVAIARPRWFLMENVEQAKNSKAWAEARAILVRAGYGLTECKLDASYYGVAQARRRLFVV 167          
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: A0A841M0W5_9HYPH (Cytosine-specific methyltransferase n=4 Tax=Paenochrobactrum gallinarii TaxID=643673 RepID=A0A841M0W5_9HYPH)

HSP 1 Score: 63.5 bits (153), Expect = 1.150e-8
Identity = 54/167 (32.34%), Postives = 78/167 (46.71%), Query Frame = 1
Query:   25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRGVSAELSTRDLYTS-EMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALARERGYHLFFLRLNASDFGPAYQRRRLFVV 522
            ++  +L  G GG S  +Q AG  ++ A D  + A   Y  N G    +S RDL    EM   +A     ++  GPPC D++ A       G+R EG  A LT      +   +    V ENV         Q A A+  + GY L   +L+AS +G A +R+RLFV+
Sbjct:    1 MRAVELFCGAGGMSLGLQRAGVDIIQAYDAWSPAVETYRHNLG--HHVSQRDLKDIFEMGPLIADLSPDLICGGPPCQDYSVA-------GKRIEGENAGLTKTFAMLVCIARPEWFVMENVPQAARSDAWQNARAMLVKAGYGLSECKLDASWYGVAQKRKRLFVI 158          
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: A0A7V6U0Q0_9HYPH (Cytosine-specific methyltransferase n=1 Tax=Brucella intermedia TaxID=94625 RepID=A0A7V6U0Q0_9HYPH)

HSP 1 Score: 61.2 bits (147), Expect = 7.210e-8
Identity = 52/167 (31.14%), Postives = 76/167 (45.51%), Query Frame = 1
Query:   25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRGVSAELSTRDLYTS-EMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALARERGYHLFFLRLNASDFGPAYQRRRLFVV 522
            V+V DL AG  G S  ++ AG  V+ A D+   A   Y  N G    +   DL     +   +A     M+  GPPC D++ A       GER+EG  A++T      +T  +    + ENV           A  + +  GY L   +L+AS FG A  R+RLF++
Sbjct:    8 VRVVDLFAGAAGMSLGLRNAGFDVIQAYDNWQPAVDTYRENIG--HHIWKHDLNDILGVGSMIANLQPDMIAGGPPCQDYSVA-------GERQEGKNASMTKAFAMLVTISRPAWFLMENVDQAAKSQAWAEARTILQRAGYGLTEAKLDASYFGVAQARKRLFII 165          
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: A0A345E2Z1_9EURY (DNA cytosine methyltransferase n=1 Tax=Haloplanus rubicundus TaxID=1547898 RepID=A0A345E2Z1_9EURY)

HSP 1 Score: 60.5 bits (145), Expect = 1.330e-7
Identity = 52/170 (30.59%), Postives = 78/170 (45.88%), Query Frame = 1
Query:   37 DLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRG---VSAELS--TRDLYTSEMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFAL---ARERGYHLFFLRLNASDFGPAYQRRRLFVV 522
            DL  G GGFS     AG  VV A D+  +A   Y  N     + A+++   R++          A    +VV GPPC  F+ A +   D        R++L    +  +  +Q   +V ENV   +++  G    AL   AR+ GY +  ++LNA+D+G    R RLF V
Sbjct:    9 DLFCGAGGFSLGFSHAGFDVVAATDYQESAGKTYTHNLDAPFLQADVADLAREIEPLVTLGNFDAGAIDVVVGGPPCKGFSTAGVYNPDD------PRSSLLHHYIRAVEHLQPRAIVVENVPGAKAVRDGTYVDALLRNARDLGYKIRMMKLNAADYGVPQLRERLFFV 172          
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: UPI000B2EFF44 (DNA (cytosine-5-)-methyltransferase n=1 Tax=Prevotella lascolaii TaxID=1776379 RepID=UPI000B2EFF44)

HSP 1 Score: 59.7 bits (143), Expect = 2.740e-7
Identity = 55/176 (31.25%), Postives = 83/176 (47.16%), Query Frame = 1
Query:   10 PGPDAVKVA--DLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRGVSAELSTRDLYTSEMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALA---RERGYHLFFLRLNASDFGPAYQRRRLFVV 522
            P P+  K    DL AG+GGF  A+Q  GG+ VY+ +  AAA+  Y AN G   E+   D+ T E  ++       ++  G PC  F+ A + +    E    TR  L   +   L + +      ENV  + +   G+    +    R  GY +    L+ASDFG A  RRR+++V
Sbjct:  124 PAPENPKFTFIDLFAGMGGFRIAMQQLGGKCVYSSEFKAAAQQAYIANYG---EMPFGDI-TKESTKRYIPDHFDILCAGFPCQAFSAAGVRKGFADE----TRGTLFFEVARILKEKRPKGFFLENVEGLVNHDGGRTLHIILDTLRSLGYKVSHRVLDASDFGVAQARRRIYIV 291          
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: UPI001F373FFB (DNA (cytosine-5-)-methyltransferase n=1 Tax=[Ochrobactrum] teleogrylli TaxID=2479765 RepID=UPI001F373FFB)

HSP 1 Score: 58.9 bits (141), Expect = 4.630e-7
Identity = 54/168 (32.14%), Postives = 74/168 (44.05%), Query Frame = 1
Query:   25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRG--VSAELSTRDLYTSEMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALARERGYHLFFLRLNASDFGPAYQRRRLFVV 522
            V+V DL  G GG S  ++ AG  V+ A D+   A   Y AN G  V A      L    M   L      M+  GPPC D++ A       GER+EG  A +T      +T  +    + ENV           A  +    GY L   +L+AS +G A  R+RLF++
Sbjct:   27 VRVIDLFCGAGGMSCGLRNAGFDVIRAYDNWQPAISTYRANIGSHVWAHNLNDILGIGPMLSSLQPD---MIAGGPPCQDYSVA-------GERQEGENANMTKAFAMLVTIARPQWFLMENVEQARRSRVWAEARTILVRAGYGLTEAKLDASYYGVAQSRKRLFII 184          
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: A0A0H2LWU9_VARPD (DNA (cytosine-5-)-methyltransferase n=1 Tax=Variovorax paradoxus TaxID=34073 RepID=A0A0H2LWU9_VARPD)

HSP 1 Score: 55.8 bits (133), Expect = 4.480e-6
Identity = 53/168 (31.55%), Postives = 82/168 (48.81%), Query Frame = 1
Query:   25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRGVSAELSTRDLYTSEMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTR-AALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALARER-GYHLFFLRLNASDFGPAYQRRRLFVV 522
            V VAD+ AG+GGFS   ++AG RVV+A +H  AA  ++  N     E + +DL  ++ W  + +    +++  P C   +PAR       + +  T  A ++ +  HQ         V ENV    +      A+  A    GY L  + LNA+D G   +R+RLFVV
Sbjct:    3 VDVADMFAGLGGFSEGARLAGCRVVWAANHWRAAVDMHALNHP-ETEHACQDLEQAD-WRTVPSHD--VLLASPACQGHSPARGAEKPHHDAQRSTAWAVVSAVEYHQPVAF-----VAENVRQFATKWVLYRAWCEAMHALGYALAPMVLNAADSGVPQERKRLFVV 161          
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: A0A0U3RVY6_9EURY (DNA-cytosine modification methylase n=4 Tax=Thermococcus TaxID=2263 RepID=A0A0U3RVY6_9EURY)

HSP 1 Score: 55.5 bits (132), Expect = 6.230e-6
Identity = 49/172 (28.49%), Postives = 79/172 (45.93%), Query Frame = 1
Query:   25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDAN--RGVSAELSTRDLYTSEMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERR--EGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALARE---RGYHLFFLRLNASDFGPAYQRRRLFV 519
            ++V DL AG GGFSR  + AG ++V A+++       Y AN    V      + L + ++ +++      +++ GPPC  F    L R +    R        L    +  L   + P+ V E V  +     G +  AL +E    GY ++F  LNA D+G    RRR+F+
Sbjct:    1 MRVIDLFAGAGGFSRGFKEAGFKIVAAVENFPPKAKSYQANFPEAVIFVEDIKRLDSEKLKKEIGE--VEVIIGGPPCEPFTAINLKRKENPIDRLYNDPTGRLVLHFIRFLKVFKPPIFVMEEVPQV---MEGPLREALRKEFKKAGYEVYFNVLNAYDYGTPQIRRRVFI 167          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A835Z872_9STRA1.050e-10391.38S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YZ35_9STRA1.220e-3545.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI000EFA37C48.670e-932.93DNA (cytosine-5-)-methyltransferase n=1 Tax=Brucel... [more]
A0A841M0W5_9HYPH1.150e-832.34Cytosine-specific methyltransferase n=4 Tax=Paenoc... [more]
A0A7V6U0Q0_9HYPH7.210e-831.14Cytosine-specific methyltransferase n=1 Tax=Brucel... [more]
A0A345E2Z1_9EURY1.330e-730.59DNA cytosine methyltransferase n=1 Tax=Haloplanus ... [more]
UPI000B2EFF442.740e-731.25DNA (cytosine-5-)-methyltransferase n=1 Tax=Prevot... [more]
UPI001F373FFB4.630e-732.14DNA (cytosine-5-)-methyltransferase n=1 Tax=[Ochro... [more]
A0A0H2LWU9_VARPD4.480e-631.55DNA (cytosine-5-)-methyltransferase n=1 Tax=Variov... [more]
A0A0U3RVY6_9EURY6.230e-628.49DNA-cytosine modification methylase n=4 Tax=Thermo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_38contigContig_38:335905..336426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165506|e_gw1.38.43.1
BRITEko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036
KEGG rclassRC00003,RC00332
KEGG ReactionR04858
KEGG ModuleM00035
KEGG Pathwayko00270,ko01100,ko05206,map00270,map01100,map05206
KEGG koko:K00558
EC2.1.1.37
Preferred namedcm
DescriptionCytosine-specific methyltransferase
COG categoryH
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG0270@1|root,COG0270@2|Bacteria,2GJR6@201174|Actinobacteria,22KZ7@1653|Corynebacteriaceae
Evalue2.14e-11
Seed ortholog585529.HMPREF0291_11893
Hectar predicted targeting categoryother localisation
TranscriptId165828
TrackFilteredModels1
ProteinId165506
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165506gene_9294Tribonema minus UTEX_B_3156 geneContig_38 335905..336426 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9294_1exon_9294_1Tribonema minus UTEX_B_3156 exonContig_38 335905..336426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9294CDS_9294Tribonema minus UTEX_B_3156 CDSContig_38 335905..336426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165506Trimin1|165506|e_gw1.38.43.1Tribonema minus UTEX_B_3156 polypeptideContig_38 335905..336426 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9294 ID=mRNA_9294|Name=jgi.p|Trimin1|165506|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=522bp|location=Sequence derived from alignment at Contig_38:335905..336426+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGACCCTGGGCCGGACGCGGTGAAAGTGGCAGACCTCTGTGCGGG
CATTGGGGGGTTCAGCCGTGCCGTACAGATGGCAGGAGGACGCGTAGTGT
ACGCCATGGACCACAACGCCGCAGCGAAGCCCGTCTACGATGCCAATCGA
GGTGTTAGTGCCGAGCTTTCCACCAGAGACCTATACACCTCTGAAATGTG
GGAGCAACTAGCGGCCTCTGGCGCTGGTATGGTAGTAACGGGGCCTCCTT
GTACAGATTTCGCACCAGCACGCTTGGTACGAGCAGACAAAGGGGAGCGT
AGAGAAGGCACCAGAGCAGCCCTCACGCCCTTGCTGGTGCATCAGCTGAC
GCAAATGCAGATGCCACTGGTGGTGCAGGAAAATGTTGTGTCTATTGAGT
CAATGACTCGAGGACAGGTGGCCTTCGCATTAGCACGCGAAAGGGGGTAT
CATCTGTTCTTCCTACGGCTGAACGCCAGTGACTTTGGGCCAGCATACCA
GCGGCGGCGCTTATTTGTAGTC
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protein sequence of jgi.p|Trimin1|165506

>Trimin1|165506|e_gw1.38.43.1 ID=Trimin1|165506|e_gw1.38.43.1|Name=jgi.p|Trimin1|165506|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=174bp
MGDPGPDAVKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANR
GVSAELSTRDLYTSEMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGER
REGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALARERGY
HLFFLRLNASDFGPAYQRRRLFVV
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mRNA from alignment at Contig_38:335905..336426+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9294 ID=mRNA_9294|Name=jgi.p|Trimin1|165506|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=522bp|location=Sequence derived from alignment at Contig_38:335905..336426+ (Tribonema minus UTEX_B_3156 )
ATGGGGGACCCTGGGCCGGACGCGGTGAAAGTGGCAGACCTCTGTGCGGG CATTGGGGGGTTCAGCCGTGCCGTACAGATGGCAGGAGGACGCGTAGTGT ACGCCATGGACCACAACGCCGCAGCGAAGCCCGTCTACGATGCCAATCGA GGTGTTAGTGCCGAGCTTTCCACCAGAGACCTATACACCTCTGAAATGTG GGAGCAACTAGCGGCCTCTGGCGCTGGTATGGTAGTAACGGGGCCTCCTT GTACAGATTTCGCACCAGCACGCTTGGTACGAGCAGACAAAGGGGAGCGT AGAGAAGGCACCAGAGCAGCCCTCACGCCCTTGCTGGTGCATCAGCTGAC GCAAATGCAGATGCCACTGGTGGTGCAGGAAAATGTTGTGTCTATTGAGT CAATGACTCGAGGACAGGTGGCCTTCGCATTAGCACGCGAAAGGGGGTAT CATCTGTTCTTCCTACGGCTGAACGCCAGTGACTTTGGGCCAGCATACCA GCGGCGGCGCTTATTTGTAGTC
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Coding sequence (CDS) from alignment at Contig_38:335905..336426+

>mRNA_9294 ID=mRNA_9294|Name=jgi.p|Trimin1|165506|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=522bp|location=Sequence derived from alignment at Contig_38:335905..336426+ (Tribonema minus UTEX_B_3156 )
ATGGGGGACCCTGGGCCGGACGCGGTGAAAGTGGCAGACCTCTGTGCGGG
CATTGGGGGGTTCAGCCGTGCCGTACAGATGGCAGGAGGACGCGTAGTGT
ACGCCATGGACCACAACGCCGCAGCGAAGCCCGTCTACGATGCCAATCGA
GGTGTTAGTGCCGAGCTTTCCACCAGAGACCTATACACCTCTGAAATGTG
GGAGCAACTAGCGGCCTCTGGCGCTGGTATGGTAGTAACGGGGCCTCCTT
GTACAGATTTCGCACCAGCACGCTTGGTACGAGCAGACAAAGGGGAGCGT
AGAGAAGGCACCAGAGCAGCCCTCACGCCCTTGCTGGTGCATCAGCTGAC
GCAAATGCAGATGCCACTGGTGGTGCAGGAAAATGTTGTGTCTATTGAGT
CAATGACTCGAGGACAGGTGGCCTTCGCATTAGCACGCGAAAGGGGGTAT
CATCTGTTCTTCCTACGGCTGAACGCCAGTGACTTTGGGCCAGCATACCA
GCGGCGGCGCTTATTTGTAGTC
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