mRNA_9294 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: A0A835Z872_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z872_9STRA) HSP 1 Score: 305 bits (780), Expect = 1.050e-103 Identity = 159/174 (91.38%), Postives = 162/174 (93.10%), Query Frame = 1
Query: 1 MGDPGPDAVKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRGVSAELSTRDLYTSEMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALARERGYHLFFLRLNASDFGPAYQRRRLFVV 522
MGDPGPDAVKV DLCAGIGGFSRAVQMAGGRVVYAMD NAAAKPVYDANRGV AELSTRDLYTSEMWE+LAASGAGMVVTGPPCT+ ARLVRADKGERREG RAALTPLLVHQLTQMQMPLVV ENVVSIESMTRGQ AFALARERGYH+ FLRL ASDFGP YQRRRLFVV
Sbjct: 1 MGDPGPDAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREG-RAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYHICFLRLYASDFGPPYQRRRLFVV 173
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: A0A835YZ35_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ35_9STRA) HSP 1 Score: 141 bits (355), Expect = 1.220e-35 Identity = 79/172 (45.93%), Postives = 95/172 (55.23%), Query Frame = 1
Query: 7 DPGPDAVKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRGVSAELSTRDLYTSEMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALARERGYHLFFLRLNASDFGPAYQRRRLFVV 522
DPGPDA KVADLCAG+GGFSRAVQ+AGGRVVYAMD+NA+ KP+YDANRG AEL+ DLY + W L +SGAG+ V G PC D++ AR V A+KG YH+ FLR+ ASD GP Y++ RL V
Sbjct: 440 DPGPDAPKVADLCAGLGGFSRAVQLAGGRVVYAMDNNASVKPLYDANRGAGAELTISDLYLPDTWTALVSSGAGVAVAGTPCRDWSSARHVDANKG---------------------------------------------------YHVSFLRMRASDHGPPYKKHRLIAV 560
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: UPI000EFA37C4 (DNA (cytosine-5-)-methyltransferase n=1 Tax=Brucella intermedia TaxID=94625 RepID=UPI000EFA37C4) HSP 1 Score: 63.9 bits (154), Expect = 8.670e-9 Identity = 55/167 (32.93%), Postives = 79/167 (47.31%), Query Frame = 1
Query: 25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRGVSA-ELSTRDLYTSEMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALARERGYHLFFLRLNASDFGPAYQRRRLFVV 522
++V DL G GG S ++ +G VV A D A Y AN G A + +D+ + +A M+V GPPC D++ A GER+EG A +T + + + ENV ++ A A+ GY L +L+AS +G A RRRLFVV
Sbjct: 10 LRVVDLFCGAGGLSLGLKNSGLDVVQAYDAWQPAIDTYRANVGHHAWKHDLKDILG--VGSMIAQLQPDMIVGGPPCQDYSIA-------GERQEGQNAVMTKAFAMMVAIARPRWFLMENVEQAKNSKAWAEARAILVRAGYGLTECKLDASYYGVAQARRRLFVV 167
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: A0A841M0W5_9HYPH (Cytosine-specific methyltransferase n=4 Tax=Paenochrobactrum gallinarii TaxID=643673 RepID=A0A841M0W5_9HYPH) HSP 1 Score: 63.5 bits (153), Expect = 1.150e-8 Identity = 54/167 (32.34%), Postives = 78/167 (46.71%), Query Frame = 1
Query: 25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRGVSAELSTRDLYTS-EMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALARERGYHLFFLRLNASDFGPAYQRRRLFVV 522
++ +L G GG S +Q AG ++ A D + A Y N G +S RDL EM +A ++ GPPC D++ A G+R EG A LT + + V ENV Q A A+ + GY L +L+AS +G A +R+RLFV+
Sbjct: 1 MRAVELFCGAGGMSLGLQRAGVDIIQAYDAWSPAVETYRHNLG--HHVSQRDLKDIFEMGPLIADLSPDLICGGPPCQDYSVA-------GKRIEGENAGLTKTFAMLVCIARPEWFVMENVPQAARSDAWQNARAMLVKAGYGLSECKLDASWYGVAQKRKRLFVI 158
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: A0A7V6U0Q0_9HYPH (Cytosine-specific methyltransferase n=1 Tax=Brucella intermedia TaxID=94625 RepID=A0A7V6U0Q0_9HYPH) HSP 1 Score: 61.2 bits (147), Expect = 7.210e-8 Identity = 52/167 (31.14%), Postives = 76/167 (45.51%), Query Frame = 1
Query: 25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRGVSAELSTRDLYTS-EMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALARERGYHLFFLRLNASDFGPAYQRRRLFVV 522
V+V DL AG G S ++ AG V+ A D+ A Y N G + DL + +A M+ GPPC D++ A GER+EG A++T +T + + ENV A + + GY L +L+AS FG A R+RLF++
Sbjct: 8 VRVVDLFAGAAGMSLGLRNAGFDVIQAYDNWQPAVDTYRENIG--HHIWKHDLNDILGVGSMIANLQPDMIAGGPPCQDYSVA-------GERQEGKNASMTKAFAMLVTISRPAWFLMENVDQAAKSQAWAEARTILQRAGYGLTEAKLDASYFGVAQARKRLFII 165
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: A0A345E2Z1_9EURY (DNA cytosine methyltransferase n=1 Tax=Haloplanus rubicundus TaxID=1547898 RepID=A0A345E2Z1_9EURY) HSP 1 Score: 60.5 bits (145), Expect = 1.330e-7 Identity = 52/170 (30.59%), Postives = 78/170 (45.88%), Query Frame = 1
Query: 37 DLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRG---VSAELS--TRDLYTSEMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFAL---ARERGYHLFFLRLNASDFGPAYQRRRLFVV 522
DL G GGFS AG VV A D+ +A Y N + A+++ R++ A +VV GPPC F+ A + D R++L + + +Q +V ENV +++ G AL AR+ GY + ++LNA+D+G R RLF V
Sbjct: 9 DLFCGAGGFSLGFSHAGFDVVAATDYQESAGKTYTHNLDAPFLQADVADLAREIEPLVTLGNFDAGAIDVVVGGPPCKGFSTAGVYNPDD------PRSSLLHHYIRAVEHLQPRAIVVENVPGAKAVRDGTYVDALLRNARDLGYKIRMMKLNAADYGVPQLRERLFFV 172
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: UPI000B2EFF44 (DNA (cytosine-5-)-methyltransferase n=1 Tax=Prevotella lascolaii TaxID=1776379 RepID=UPI000B2EFF44) HSP 1 Score: 59.7 bits (143), Expect = 2.740e-7 Identity = 55/176 (31.25%), Postives = 83/176 (47.16%), Query Frame = 1
Query: 10 PGPDAVKVA--DLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRGVSAELSTRDLYTSEMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALA---RERGYHLFFLRLNASDFGPAYQRRRLFVV 522
P P+ K DL AG+GGF A+Q GG+ VY+ + AAA+ Y AN G E+ D+ T E ++ ++ G PC F+ A + + E TR L + L + + ENV + + G+ + R GY + L+ASDFG A RRR+++V
Sbjct: 124 PAPENPKFTFIDLFAGMGGFRIAMQQLGGKCVYSSEFKAAAQQAYIANYG---EMPFGDI-TKESTKRYIPDHFDILCAGFPCQAFSAAGVRKGFADE----TRGTLFFEVARILKEKRPKGFFLENVEGLVNHDGGRTLHIILDTLRSLGYKVSHRVLDASDFGVAQARRRIYIV 291
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: UPI001F373FFB (DNA (cytosine-5-)-methyltransferase n=1 Tax=[Ochrobactrum] teleogrylli TaxID=2479765 RepID=UPI001F373FFB) HSP 1 Score: 58.9 bits (141), Expect = 4.630e-7 Identity = 54/168 (32.14%), Postives = 74/168 (44.05%), Query Frame = 1
Query: 25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRG--VSAELSTRDLYTSEMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALARERGYHLFFLRLNASDFGPAYQRRRLFVV 522
V+V DL G GG S ++ AG V+ A D+ A Y AN G V A L M L M+ GPPC D++ A GER+EG A +T +T + + ENV A + GY L +L+AS +G A R+RLF++
Sbjct: 27 VRVIDLFCGAGGMSCGLRNAGFDVIRAYDNWQPAISTYRANIGSHVWAHNLNDILGIGPMLSSLQPD---MIAGGPPCQDYSVA-------GERQEGENANMTKAFAMLVTIARPQWFLMENVEQARRSRVWAEARTILVRAGYGLTEAKLDASYYGVAQSRKRLFII 184
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: A0A0H2LWU9_VARPD (DNA (cytosine-5-)-methyltransferase n=1 Tax=Variovorax paradoxus TaxID=34073 RepID=A0A0H2LWU9_VARPD) HSP 1 Score: 55.8 bits (133), Expect = 4.480e-6 Identity = 53/168 (31.55%), Postives = 82/168 (48.81%), Query Frame = 1
Query: 25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRGVSAELSTRDLYTSEMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERREGTR-AALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALARER-GYHLFFLRLNASDFGPAYQRRRLFVV 522
V VAD+ AG+GGFS ++AG RVV+A +H AA ++ N E + +DL ++ W + + +++ P C +PAR + + T A ++ + HQ V ENV + A+ A GY L + LNA+D G +R+RLFVV
Sbjct: 3 VDVADMFAGLGGFSEGARLAGCRVVWAANHWRAAVDMHALNHP-ETEHACQDLEQAD-WRTVPSHD--VLLASPACQGHSPARGAEKPHHDAQRSTAWAVVSAVEYHQPVAF-----VAENVRQFATKWVLYRAWCEAMHALGYALAPMVLNAADSGVPQERKRLFVV 161
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Match: A0A0U3RVY6_9EURY (DNA-cytosine modification methylase n=4 Tax=Thermococcus TaxID=2263 RepID=A0A0U3RVY6_9EURY) HSP 1 Score: 55.5 bits (132), Expect = 6.230e-6 Identity = 49/172 (28.49%), Postives = 79/172 (45.93%), Query Frame = 1
Query: 25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDAN--RGVSAELSTRDLYTSEMWEQLAASGAGMVVTGPPCTDFAPARLVRADKGERR--EGTRAALTPLLVHQLTQMQMPLVVQENVVSIESMTRGQVAFALARE---RGYHLFFLRLNASDFGPAYQRRRLFV 519
++V DL AG GGFSR + AG ++V A+++ Y AN V + L + ++ +++ +++ GPPC F L R + R L + L + P+ V E V + G + AL +E GY ++F LNA D+G RRR+F+
Sbjct: 1 MRVIDLFAGAGGFSRGFKEAGFKIVAAVENFPPKAKSYQANFPEAVIFVEDIKRLDSEKLKKEIGE--VEVIIGGPPCEPFTAINLKRKENPIDRLYNDPTGRLVLHFIRFLKVFKPPIFVMEEVPQV---MEGPLREALRKEFKKAGYEVYFNVLNAYDYGTPQIRRRVFI 167 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165506 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9294 ID=mRNA_9294|Name=jgi.p|Trimin1|165506|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=522bp|location=Sequence derived from alignment at Contig_38:335905..336426+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGGGACCCTGGGCCGGACGCGGTGAAAGTGGCAGACCTCTGTGCGGGback to top protein sequence of jgi.p|Trimin1|165506 >Trimin1|165506|e_gw1.38.43.1 ID=Trimin1|165506|e_gw1.38.43.1|Name=jgi.p|Trimin1|165506|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=174bp MGDPGPDAVKVADLCAGIGGFSRAVQMAGGRVVYAMDHNAAAKPVYDANRback to top mRNA from alignment at Contig_38:335905..336426+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9294 ID=mRNA_9294|Name=jgi.p|Trimin1|165506|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=522bp|location=Sequence derived from alignment at Contig_38:335905..336426+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_38:335905..336426+ >mRNA_9294 ID=mRNA_9294|Name=jgi.p|Trimin1|165506|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=522bp|location=Sequence derived from alignment at Contig_38:335905..336426+ (Tribonema minus UTEX_B_3156 )back to top |