mRNA_9266 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165493
Unique NamemRNA_9266
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|165493 vs. uniprot
Match: A0A836CDD6_9STRA (Urease accessory protein UreF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDD6_9STRA)

HSP 1 Score: 573 bits (1476), Expect = 6.250e-206
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1
Query:    1 MTAGIDAEADGTPSVGNEPAAARAVWSVQWLTWQLCDSALPTGGFAHSNGLEASVAAGAVSAADPHFLAQFLKSCLANAVALQVPMLRAVWDTGAGGSEGLLKAWLQADALANAVITSHVARRASAAQGCALLRLACEALLCTGAHGDALTEFRKQLRLSQSANLSVQARPVAPSSLQQHSGAAAKSSGENLLVVWVWGHLAPAFGFVCLSAGIDAAAASRMFLYTVARDVLSAANRLSLIGPMQGARLLADISGYVDLLLLENASTAECIGLPLEQQVAQVDPVLELLQASHEQLYSRLFNS 909
            MTAGIDAEADGTPSVGNEPAAARAVWSVQWLTWQLCDSALPTGGFAHSNGLEASVAAGAVSAADPHFLAQFLKSCLANAVALQVPMLRAVWDTGAGGSEGLLKAWLQADALANAVITSHVARRASAAQGCALLRLACEALLCTGAHGDALTEFRKQLRLSQSANLSVQARPVAPSSLQQHSGAAAKSSGENLLVVWVWGHLAPAFGFVCLSAGIDAAAASRMFLYTVARDVLSAANRLSLIGPMQGARLLADISGYVDLLLLENASTAECIGLPLEQQVAQVDPVLELLQASHEQLYSRLFNS
Sbjct:    1 MTAGIDAEADGTPSVGNEPAAARAVWSVQWLTWQLCDSALPTGGFAHSNGLEASVAAGAVSAADPHFLAQFLKSCLANAVALQVPMLRAVWDTGAGGSEGLLKAWLQADALANAVITSHVARRASAAQGCALLRLACEALLCTGAHGDALTEFRKQLRLSQSANLSVQARPVAPSSLQQHSGAAAKSSGENLLVVWVWGHLAPAFGFVCLSAGIDAAAASRMFLYTVARDVLSAANRLSLIGPMQGARLLADISGYVDLLLLENASTAECIGLPLEQQVAQVDPVLELLQASHEQLYSRLFNS 303          
BLAST of jgi.p|Trimin1|165493 vs. uniprot
Match: D7FXQ5_ECTSI (Urease accessory protein UreF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ5_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 9.340e-51
Identity = 130/320 (40.62%), Postives = 177/320 (55.31%), Query Frame = 1
Query:   79 SVQWLTWQLCDSALPTGGFAHSNGLEASVAAGAVSAADPHFLAQFLKSCLANAVALQVPMLRAVWDTGAGGSEGLLKAWLQADALANAVITSHVARRASAAQGCALLRLACEALLCTGAH-GDALTEFRKQLRLSQSANLSV-------QARPVAPSSLQ--QHSGAAAKSSGENLLVVWVWGHLAPAFGFVCLSAGIDAAAASRMFLYTVARDVLSAANRLSLIGPMQGARLLADISGYVDLLLL--------------------ENASTAECIGLP-------------LEQQVAQVDPVLELLQASHEQLYSRLFNS 909
            + +W  WQLCDS LPTGGFAHS GLEA+ A G V A     L +F++  LANA +LQ+P+LR             L+AWL+ D++A+A IT+  ARRAS AQG  LLR A +A+   G   G  ++EFR  +R   SA  S        QA     S     + S A+ K +G    +V   GH +PAFG VC + GI+   A+R F++ VARDVLSAA RLSLIGP++  RL++++SGYV+ LL                     ++ ST E    P             +  +V QVDPV +++Q  H++LYSR+FNS
Sbjct:   20 AAKWTLWQLCDSGLPTGGFAHSGGLEAAAAQGIVRAKHTGSLLRFVRGALANAASLQLPLLREARRART------LEAWLEVDSVAHACITAEAARRASLAQGAGLLRAA-QAMFPLGEECGAIISEFRALVRRGGSAAFSEAXXXXXDQATSEGKSGRNGTEKSRASKKKAGAASALVTARGHHSPAFGVVCGALGIEEDEAARAFMFLVARDVLSAATRLSLIGPLEAGRLVSNLSGYVETLLRVGDVXXXXXXXXPTGGGSGRDDDSTEEGTDAPGRLLSEEWGGGGGVAGRVCQVDPVQDIVQGLHDRLYSRMFNS 332          
BLAST of jgi.p|Trimin1|165493 vs. uniprot
Match: A0A6H5JZ73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ73_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.410e-32
Identity = 96/226 (42.48%), Postives = 124/226 (54.87%), Query Frame = 1
Query:   79 SVQWLTWQLCDSALPTGGFAHSNGLEASVAAGAVSAADPHFLAQFLKSCLANAVALQVPMLRAVWDTGAGGSEGLLKAWLQADALANAVITSHVARRASAAQGCALLRLACEALLCTGAH-GDALTEFRKQLRLSQSANLSVQARPVAPSSLQQHSGAAAKS--------------SGENLLVVWVWGHLAPAFGFVCLSAGIDAAAASRMFLYTVARDVLSAANR 711
            + QW  WQLCDS LPTGGFAHS GLEA+ A G V A     L +F++  LANA +LQ+P+LR             L+AWL+ D++A+A IT+  ARRAS AQG  LLR A +A+   G   G  + EFR  +R   SA  S      A    +  + +  KS              +G    +V   GH APAFG VC + GI+   A+R F++ VARDVLSAA R
Sbjct:   34 AAQWTVWQLCDSGLPTGGFAHSGGLEAAAAQGIVRAKHTGSLLRFVRGALANAASLQLPLLREARRART------LEAWLEVDSVAHACITAEAARRASLAQGAGLLRAA-QAMFPLGEECGAIIIEFRALVRRGGSAAFS-----EAGGGGRDQATSEGKSXXXXXXXXXXXXXXAGAASALVTARGHHAPAFGVVCGALGIEENEAARAFMFLVARDVLSAATR 247          
BLAST of jgi.p|Trimin1|165493 vs. uniprot
Match: D8RLY9_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RLY9_SELML)

HSP 1 Score: 127 bits (320), Expect = 6.870e-32
Identity = 99/274 (36.13%), Postives = 134/274 (48.91%), Query Frame = 1
Query:   88 WLTWQLCDSALPTGGFAHSNGLEASVAAGAVSAADPHFLAQFLKSCLANAVALQVPMLRAVWDTGAGGSEGLLKAWLQADALANAVITSHVARRASAAQGCALLRLACEALLCTGAHGDALTEFRKQLRLSQSANLSVQARPVAPSSLQQHSGAAAKSSGENLLVVWVWGHLAPAFGFVCLSAGIDAAAASRMFLYTVARDVLSAANRLSLIGPMQGARLLADISGYVDLLLLENASTAECIGLPLEQQVAQVDPVLELLQASHEQLYSRLFNS 909
            W+ WQL DS  PTGGFAHS GLEA+V AG VS  D   L  F+KS L N+ +L +P + A +          +  W++ D L NA +++HVARRAS++QG ALLR A          G    E R  +R  +++                                   GH A  FG VC    +DA    R +LY   RDVLSAA RL+L+GP+Q A +   + G+ +      A   +C    +E    QV P+L+  QA H+ L+SRLF S
Sbjct:   13 WVVWQLVDSFFPTGGFAHSYGLEAAVQAGLVS--DSKSLDTFIKSTLENSGSLLLPFVSASFKLPD------VAGWIELDRLLNATLSNHVARRASSSQGSALLRTAATVYPDLAELG----ELRGVVRAGRAS-----------------------------------GHHAGVFGIVCGLLKLDALTCQRAYLYLTLRDVLSAATRLNLVGPLQAAAMQQSLRGFGE------AVVRKCADRGVED-ACQVSPLLDTAQACHDHLFSRLFCS 232          
BLAST of jgi.p|Trimin1|165493 vs. uniprot
Match: A0A3F2S153_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S153_9STRA)

HSP 1 Score: 128 bits (322), Expect = 9.390e-32
Identity = 92/274 (33.58%), Postives = 139/274 (50.73%), Query Frame = 1
Query:   88 WLTWQLCDSALPTGGFAHSNGLEASVAAGAVSAADPHFLAQFLKSCLANAVALQVPMLRAVWDTGAGGSEGLLKAWLQADALANAVITSHVARRASAAQGCALLRLACEALLCTGAHGDALTEFRKQLRLSQSANLSVQARPVAPSSLQQHSGAAAKSSGENLLVVWVWGHLAPAFGFVCLSAGIDAAAASRMFLYTVARDVLSAANRLSLIGPMQGARLLADISGYVDLLLLENASTAECIGLPLEQQVAQVDPVLELLQASHEQLYSRLFNS 909
            W  WQ+ DS  PTGGFAHS GLEA+   G V+  D   L +FL + L  A    +P++ +     +  S+ L+   L+ ++ A A+ ++HVAR+AS AQG ALLRLA      T      L   RK+++                   ++H G                 H A  FG VC   G++  +A RM+L+   RDVLSAA RL+L+GP++  RL  + +  ++ +  E  +        ++   +   PVL+L+QA H+QLY+R+FNS
Sbjct:   42 WALWQMIDSLYPTGGFAHSLGLEAAAQEGLVT--DSSSLREFLSASLHQAANFALPLVFSAHQAASDASQSLIDTVLELNSRATALYSNHVARKASFAQGAALLRLALSTYAPTLPRFQTLLALRKEIKK------------------RKHGGV----------------HHAVLFGVVCALLGVENQSAQRMYLFVTIRDVLSAATRLNLVGPLEATRLQFESTPLLEKVFEEKKNR------DVKDSYSSA-PVLDLVQAMHDQLYTRIFNS 272          
BLAST of jgi.p|Trimin1|165493 vs. uniprot
Match: W7TIK8_9STRA (Urease accessory protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIK8_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.160e-31
Identity = 102/299 (34.11%), Postives = 146/299 (48.83%), Query Frame = 1
Query:   79 SVQWLTWQLCDSALPTGGFAHSNGLEASVAAGA--VSAADPHF----LAQFLKSCLANAVALQVPMLRAVWD-----------TGAGGSEGLLKAWLQADALANAVITSHVARRASAAQGCALLRLACEAL-LCTGAHGDALTEFRKQLRLSQSANLSVQARPVAPSSLQQHSGAAAKSSGENLLVVWVWGHLAPAFGFVCLSAGIDAAAASRMFLYTVARDVLSAANRLSLIGPMQGARL----LADISGYVDLLLLENASTAECIGLPLEQQVAQVDPVLELLQASHEQLYSRLFNS 909
            +V W+ WQL DS LPTGGFAHS GLEA++      + + D       L  F +  +    +L +PM+ A              T AG S  ++  W   D   +A+IT+   RRAS AQG ALLRLAC+ +   +  H   L   R  +R      +  + R  A    +            ++ ++   GH AP FG++C + G+DA    RMF Y V RD+++AA RL L+GP+   RL      D    V   L + AS     G    +   Q +P+L++LQ +HE+LYSRLF S
Sbjct:    8 TVSWVIWQLLDSNLPTGGFAHSYGLEAALQLKHFDLQSVDEEMRVTGLLAFARQTMEQQASLLLPMVSAAHHAAKDATALLKCTDAGSSVSMVSRWATLDKECHALITTEGGRRASTAQGLALLRLACDNIPSLSSQHCQWLRTARDLIR----GRVGYRYRDDAAGESES------LGVSHDMSILSARGHQAPVFGWLCQALGVDAVTCFRMFCYLVLRDLMAAATRLGLVGPLAAVRLQMTLYGDAEAVVGRFLEQEASERATGGKEGGRGPRQENPLLDILQGAHEKLYSRLFIS 296          
BLAST of jgi.p|Trimin1|165493 vs. uniprot
Match: A0A5D6XGP8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGP8_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.760e-31
Identity = 103/282 (36.52%), Postives = 145/282 (51.42%), Query Frame = 1
Query:   88 WLTWQLCDSALPTGGFAHSNGLEASVAAGAVSAADPHFLAQFLKSCLANAVALQVPMLRAVWDT--------GAGGSEGLLKAWLQADALANAVITSHVARRASAAQGCALLRLACEALLCTGAHGDALTEFRKQLRLSQSANLSVQARPVAPSSLQQHSGAAAKSSGENLLVVWVWGHLAPAFGFVCLSAGIDAAAASRMFLYTVARDVLSAANRLSLIGPMQGARLLADISGYVDLLLLENASTAECIGLPLEQQVAQVDPVLELLQASHEQLYSRLFNS 909
            W  WQ+ DS  PTGGFAHS GLEA+V    V++     LA+FL+S L  +    +P++ ++           G+G  + LL A L  +A   A+ ++HVAR+AS AQG A+LRLA       G+  +   +    L       L+V+      S  QQH G                 H A  F  VC   G+D+    R+FL+   RDVLSAA RL+L+GP + AR+  ++ G     LLE    A+    PLE   +   PVL+L+QA H+QLY+R+FNS
Sbjct:   10 WAVWQMVDSLYPTGGFAHSLGLEAAVQERLVTSGGAP-LARFLRSSLHQSANFALPIVFSMHSAALQTRGGDGSGEQQALLDAVLDVNARTTALFSNHVARKASLAQGAAMLRLALSTYGSAGSPDEQAHDAFAVL-------LAVRKE----SKRQQHPGV----------------HHAVVFALVCALLGVDSDTCQRLFLFYGVRDVLSAATRLNLVGPFEAARVQFELRG-----LLERVFQAKK-NRPLEDSYSSA-PVLDLVQAMHDQLYTRIFNS 256          
BLAST of jgi.p|Trimin1|165493 vs. uniprot
Match: A0A662XE70_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XE70_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.180e-31
Identity = 105/295 (35.59%), Postives = 142/295 (48.14%), Query Frame = 1
Query:   61 AARAVWSVQWLTWQLCDSALPTGGFAHSNGLEASVAAGAVSAADPHFLAQFLKSCLANAVALQVPML----RAVWDTGAGGSEGLLKAWLQADALANAVITSHVARRASAAQGCALLRLACEALLCTGAHG--------DALTEFRKQLRLSQSANLSVQARPVAPSSLQQHSGAAAKSSGENLLVVWVWGHLAPAFGFVCLSAGIDAAAASRMFLYTVARDVLSAANRLSLIGPMQGARLLADISGYVDLLLLENASTAECIGLPLEQQVAQVDPVLELLQASHEQLYSRLFNS 909
            AA A  +  W  WQ+ DS  PTGGFAHS GLEA+   G V+A  P  L +FL + L  A    +P++    RA     A     L+ A L  +A A A+ ++HVAR+AS AQG ALLRLA    L T   G         AL   RK+ +  + A L                                  H A  FG VC   G+ A A  RM+L+   RDVLSAA RL+L+GP++ ARL  + +  ++ + L            +    +   PVL+L+QA H+QLY+R+FNS
Sbjct:   47 AAAASPAGDWALWQMVDSLYPTGGFAHSLGLEAAAQEGLVTAQSPESLRRFLSASLHQAANFALPIVFSAHRATSSAAADDPAMLVDALLARNAEATALYSNHVARKASFAQGAALLRLA----LSTYGAGVEPRARRFQALLTLRKEFKRRKHAGL----------------------------------HHAVLFGAVCALLGLTADATQRMYLFVTTRDVLSAATRLNLVGPLEAARLQFETAPLLERVYLAKKDRE------MRDSYSSA-PVLDLVQAMHDQLYTRIFNS 296          
BLAST of jgi.p|Trimin1|165493 vs. uniprot
Match: G5AGG3_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G5AGG3_PHYSP)

HSP 1 Score: 126 bits (316), Expect = 3.430e-31
Identity = 94/275 (34.18%), Postives = 138/275 (50.18%), Query Frame = 1
Query:   88 WLTWQLCDSALPTGGFAHSNGLEASVAAGAVSAADPHFLAQFLKSCLANAVALQVPMLRAVWDTGAGGSEG-LLKAWLQADALANAVITSHVARRASAAQGCALLRLACEALLCTGAHGDALTEFRKQLRLSQSANLSVQARPVAPSSLQQHSGAAAKSSGENLLVVWVWGHLAPAFGFVCLSAGIDAAAASRMFLYTVARDVLSAANRLSLIGPMQGARLLADISGYVDLLLLENASTAECIGLPLEQQVAQVDPVLELLQASHEQLYSRLFNS 909
            W  WQ+ DS  PTGGFAHS GLEA+   G VS++    L  FL + L  +    +P++ +    GA      L++A LQ ++ A A+ ++HVAR+AS AQG ALLRLA      +      L   RK+ +  +   +                                  H A  FG VC   G++A    RM+L+   RDVLSAA RL+L+GPM+ A+L  + +  ++ +  E  +       P+E   +   PVL+L+QA H+QLY+R+FNS
Sbjct:   11 WALWQMVDSLYPTGGFAHSLGLEAATQEGLVSSSSS--LRDFLSASLHQSANFALPIVFSSHQIGAESDPAALVEAALQLNSRATALYSNHVARKASLAQGAALLRLALSTYAPSHPRVQTLLSLRKEAKKRKQPGV----------------------------------HHAVLFGLVCGLLGVEAEPTQRMYLFVTTRDVLSAATRLNLVGPMEAAKLQFEATPLLEKVFQEKKNR------PVELSYSSA-PVLDLVQAMHDQLYTRIFNS 242          
BLAST of jgi.p|Trimin1|165493 vs. uniprot
Match: M4BQI1_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQI1_HYAAE)

HSP 1 Score: 125 bits (315), Expect = 5.450e-31
Identity = 95/277 (34.30%), Postives = 140/277 (50.54%), Query Frame = 1
Query:   79 SVQWLTWQLCDSALPTGGFAHSNGLEASVAAGAVSAADPHFLAQFLKSCLANAVALQVPMLRAVWDTGAGGSEGLLKAWLQADALANAVITSHVARRASAAQGCALLRLACEALLCTGAHGDALTEFRKQLRLSQSANLSVQARPVAPSSLQQHSGAAAKSSGENLLVVWVWGHLAPAFGFVCLSAGIDAAAASRMFLYTVARDVLSAANRLSLIGPMQGARLLADISGYVDLLLLENASTAECIGLPLEQQVAQVDPVLELLQASHEQLYSRLFNS 909
            S  W  WQ+ DS  PTGGFAHS GLEA+   G V  A    L  F+ S L  A    +P++ + +   A  ++  + + L  ++ A A+ ++HVAR+AS AQG ALLRLA      T    D L E RK ++                           K   E +       H A  FG VC    +D  +  RM+LY   RDVLSAA RL+L+GP++ ARL  +++  ++ + L+  +        +E+  +   P+L+L+QA H+QLY+R+FNS
Sbjct:   15 SGDWALWQIIDSLYPTGGFAHSLGLEAAAQEGLVKNAVS--LRAFVSSSLHQAADFALPLVFSSYQIVASAAD-FVDSVLGLNSRATALYSNHVARKASFAQGSALLRLAVSTYAPTFPRMDVLLEIRKAVK---------------------------KQKQEGI-------HHAVLFGVVCALLAVDVESTQRMYLYVSTRDVLSAATRLNLVGPLEAARLQFEVAPLLEKVFLDKKNRE------VEESYSSA-PILDLVQAMHDQLYTRIFNS 247          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165493 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CDD6_9STRA6.250e-206100.00Urease accessory protein UreF n=1 Tax=Tribonema mi... [more]
D7FXQ5_ECTSI9.340e-5140.63Urease accessory protein UreF n=1 Tax=Ectocarpus s... [more]
A0A6H5JZ73_9PHAE3.410e-3242.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8RLY9_SELML6.870e-3236.13Uncharacterized protein n=2 Tax=Selaginella moelle... [more]
A0A3F2S153_9STRA9.390e-3233.58Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
W7TIK8_9STRA1.160e-3134.11Urease accessory protein n=3 Tax=Monodopsidaceae T... [more]
A0A5D6XGP8_9STRA1.760e-3136.52Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A662XE70_9STRA3.180e-3135.59Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
G5AGG3_PHYSP3.430e-3134.18Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
M4BQI1_HYAAE5.450e-3134.30Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_38contigContig_38:116309..118620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165493|e_gw1.38.135.1
BRITEko00000,ko03036
KEGG koko:K03188,ko:K16453
GOsGO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019627,GO:0034641,GO:0043085,GO:0043603,GO:0044093,GO:0044237,GO:0044281,GO:0050790,GO:0051336,GO:0051345,GO:0065007,GO:0065009,GO:0071704,GO:0071941,GO:1901564,GO:1905181,GO:1905182
Preferred nameUREF
Descriptionnickel cation binding
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0830@1|root,2REVQ@2759|Eukaryota
Evalue1.53e-51
Seed ortholog2880.D7FXQ5
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUrease accessory protein UreF
Ec32 orthologEc-28_001730.1
TranscriptId165815
TrackFilteredModels1
ProteinId165493
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165493gene_9266Tribonema minus UTEX_B_3156 geneContig_38 116309..118620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165493Trimin1|165493|e_gw1.38.135.1Tribonema minus UTEX_B_3156 polypeptideContig_38 116309..118620 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9266_4exon_9266_4Tribonema minus UTEX_B_3156 exonContig_38 116309..116634 -
exon_9266_3exon_9266_3Tribonema minus UTEX_B_3156 exonContig_38 117056..117284 -
exon_9266_2exon_9266_2Tribonema minus UTEX_B_3156 exonContig_38 117981..118088 -
exon_9266_1exon_9266_1Tribonema minus UTEX_B_3156 exonContig_38 118372..118620 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9266CDS_9266Tribonema minus UTEX_B_3156 CDSContig_38 118372..118620 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9266 ID=mRNA_9266|Name=jgi.p|Trimin1|165493|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=912bp|location=Sequence derived from alignment at Contig_38:116309..118620- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCGGGTATTGATGCAGAAGCAGATGGGACTCCAAGCGTCGGCAA
CGAGCCAGCGGCTGCACGCGCCGTCTGGTCCGTCCAGTGGCTCACTTGGC
AGTTGTGCGACTCAGCTCTGCCAACTGGAGGATTCGCTCACTCCAATGGG
CTGGAGGCTTCGGTAGCTGCGGGTGCGGTATCGGCGGCAGACCCACATTT
TTTGGCGCAGTTCCTCAAAAGCTGTCTTGCGAACGCAGTAGCTCTTCAGG
TGCCAATGCTGCGTGCAGTGTGGGATACAGGCGCTGGAGGGAGTGAAGGC
TTACTGAAAGCCTGGTTGCAGGCAGACGCTTTGGCAAACGCCGTCATCAC
CAGTCATGTGGCACGGCGTGCGTCTGCAGCACAAGGTTGTGCACTGCTGC
GCCTGGCGTGCGAGGCTCTGCTCTGTACCGGGGCACATGGCGATGCGCTG
ACGGAGTTTCGGAAACAGTTGCGATTGTCACAGAGTGCTAACCTGAGTGT
CCAAGCCAGACCAGTTGCACCATCCTCCTTGCAGCAGCATAGCGGTGCAG
CAGCTAAATCCTCAGGTGAGAATTTGTTGGTGGTGTGGGTGTGGGGTCAT
CTGGCCCCAGCCTTTGGGTTCGTGTGCCTATCTGCAGGCATCGATGCAGC
TGCTGCAAGCCGCATGTTTCTGTATACAGTAGCTAGAGATGTGCTTTCTG
CTGCGAACAGGTTGTCACTGATAGGCCCTATGCAGGGAGCCCGTTTGCTT
GCCGACATATCTGGTTACGTAGATCTGCTGCTGCTGGAGAACGCTTCAAC
CGCTGAATGTATTGGATTGCCACTCGAACAACAAGTGGCACAAGTAGATC
CAGTGCTGGAGCTCCTGCAGGCATCGCACGAGCAGCTCTATTCACGTCTT
TTCAACAGCTAG
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protein sequence of jgi.p|Trimin1|165493

>Trimin1|165493|e_gw1.38.135.1 ID=Trimin1|165493|e_gw1.38.135.1|Name=jgi.p|Trimin1|165493|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=304bp
MTAGIDAEADGTPSVGNEPAAARAVWSVQWLTWQLCDSALPTGGFAHSNG
LEASVAAGAVSAADPHFLAQFLKSCLANAVALQVPMLRAVWDTGAGGSEG
LLKAWLQADALANAVITSHVARRASAAQGCALLRLACEALLCTGAHGDAL
TEFRKQLRLSQSANLSVQARPVAPSSLQQHSGAAAKSSGENLLVVWVWGH
LAPAFGFVCLSAGIDAAAASRMFLYTVARDVLSAANRLSLIGPMQGARLL
ADISGYVDLLLLENASTAECIGLPLEQQVAQVDPVLELLQASHEQLYSRL
FNS*
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mRNA from alignment at Contig_38:116309..118620-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9266 ID=mRNA_9266|Name=jgi.p|Trimin1|165493|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2312bp|location=Sequence derived from alignment at Contig_38:116309..118620- (Tribonema minus UTEX_B_3156 )
ATGACGGCGGGTATTGATGCAGAAGCAGATGGGACTCCAAGCGTCGGCAA CGAGCCAGCGGCTGCACGCGCCGTCTGGTCCGTCCAGTGGCTCACTTGGC AGTTGTGCGACTCAGCTCTGCCAACTGGAGGATTCGCTCACTCCAATGGG CTGGAGGCTTCGGTAGCTGCGGGTGCGGTATCGGCGGCAGACCCACATTT TTTGGCGCAGTTCCTCAAAAGCTGTCTTGCGAACGCAGTAGCTCTTCAGG TCAGCCCTCAGTGTTATGAGCAACGCACGCTGGATCTATGCTACACTGTT GGGGAGATACGAGATGCTTTGCATTATTGTTCTCTACAGTACCAGGTTCT CACAGATCATCAAATGCCTTGCTGGTCATAAGCTGCATTGGCCTACAAGC TGGAAATGAAGACATGAACAATGTATGCTATTGGTACATGCTTACTACGG TACATGCTTACTACACGATGCCACTACTAGCACCTCTCTGCAGTATGTCC CTCAAAGCTTTGGCCCTCTTCTCTGTTTGTAGGTGCCAATGCTGCGTGCA GTGTGGGATACAGGCGCTGGAGGGAGTGAAGGCTTACTGAAAGCCTGGTT GCAGGCAGACGCTTTGGCAAACGCCGTCATCACCAGTCATGTAAGTAGAG TTCTCCACAGCAGTTTTCCGGTACACTTGCATGAAGTTGTGTACAAGAGG GCGAGCTGAGTGGGAGTAGTGCCCAGCTGCAGAAGAGCAGTACTTGCAGC ACAGTATCATGCCAGCTCTGGTGAGCACTTTGTTGCTGGACTCCAGTTGT AGTGAGGCAACCCTAGGTGGAGCAGTAGTTGAAGTAGGGCTTGCATTGCG AATGCCTTTTGTGCAGTAATTAGACACGACTTTAACCTTCAATATGGCAC AGCTTCTTCTGCTTCTACTAGCCACGCTTGCATATCACGGTGATATTGCA CTTGGGGAGGGCGCTCCGGTCCACCTCCCACGGCACCAGGCAGTGGGCAT TTCCGGCTGTTTCAAGTCAAGGTTGAGACTGAGTCTGACACACTTTCACC CTGTGGTTGGCAGCACCACCACAATGGCGATCTCCTGGGCGCACACATTG AAGTAGCAACAGAGCCAGGAGATGAAAGCTGCAATCTCTACTTTCGGTGC TGTGCAACGACTGTGCAGCAGCAGAAGACGTACGTAGGCACACGCTTGAT GGTAGACTCTGACACGTGCTTCACTTGCCTTGCGCACATCCATCTCTACA GACCACTCGGTCTGTTTTGCAGACCATCAACCCCTGAAACACCTATTGCT GCACCAACACTACTGCTGTACCTTTGTGCCTGGCAGGTGGCACGGCGTGC GTCTGCAGCACAAGGTTGTGCACTGCTGCGCCTGGCGTGCGAGGCTCTGC TCTGTACCGGGGCACATGGCGATGCGCTGACGGAGTTTCGGAAACAGTTG CGATTGTCACAGAGTGCTAACCTGAGTGTCCAAGCCAGACCAGTTGCACC ATCCTCCTTGCAGCAGCATAGCGGTGCAGCAGCTAAATCCTCAGGTGAGA ATTTGTTGGTGGTGTGTACTGCTGTGTTCACCAAAGGGCTGCATTGCTAA AGACTATCATAATGCACAATGCCATAATGCCAACAGCTTCCATATGAGAT GGGCATGGATATGCACTACACACGAGTGCTTGTTGGTACACACGAGTGCT GGTTGGTGTCCGCATCAGTAGCATGAGTGCGTCGTGGATGAACCAGGTGG CCTGTTCAGGTTCAGCAGCAATGCGATCCTCATTGTATGCAAGCACCCCT TTCTGTCTGCAAGCTACTGCTTTGAACGCACTATCGTGACTGTATTGACC ACGTACACACACTCCCAACTCCAACGTGGCTGTCTCAGACGTCTCTCCCT ACATGTCGTGCTTGTGCGCCTGCCAGCATCAGCAGATCCGACAGCCGCCG CCGCAGCAGCAGCACCCAAGAATACATCAGGGGGAGGGGTGTGGGGTCAT CTGGCCCCAGCCTTTGGGTTCGTGTGCCTATCTGCAGGCATCGATGCAGC TGCTGCAAGCCGCATGTTTCTGTATACAGTAGCTAGAGATGTGCTTTCTG CTGCGAACAGGTTGTCACTGATAGGCCCTATGCAGGGAGCCCGTTTGCTT GCCGACATATCTGGTTACGTAGATCTGCTGCTGCTGGAGAACGCTTCAAC CGCTGAATGTATTGGATTGCCACTCGAACAACAAGTGGCACAAGTAGATC CAGTGCTGGAGCTCCTGCAGGCATCGCACGAGCAGCTCTATTCACGTCTT TTCAACAGCTAG
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Coding sequence (CDS) from alignment at Contig_38:116309..118620-

>mRNA_9266 ID=mRNA_9266|Name=jgi.p|Trimin1|165493|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=912bp|location=Sequence derived from alignment at Contig_38:116309..118620- (Tribonema minus UTEX_B_3156 )
ATGACGGCGGGTATTGATGCAGAAGCAGATGGGACTCCAAGCGTCGGCAA
CGAGCCAGCGGCTGCACGCGCCGTCTGGTCCGTCCAGTGGCTCACTTGGC
AGTTGTGCGACTCAGCTCTGCCAACTGGAGGATTCGCTCACTCCAATGGG
CTGGAGGCTTCGGTAGCTGCGGGTGCGGTATCGGCGGCAGACCCACATTT
TTTGGCGCAGTTCCTCAAAAGCTGTCTTGCGAACGCAGTAGCTCTTCAGG
TGCCAATGCTGCGTGCAGTGTGGGATACAGGCGCTGGAGGGAGTGAAGGC
TTACTGAAAGCCTGGTTGCAGGCAGACGCTTTGGCAAACGCCGTCATCAC
CAGTCATGTGGCACGGCGTGCGTCTGCAGCACAAGGTTGTGCACTGCTGC
GCCTGGCGTGCGAGGCTCTGCTCTGTACCGGGGCACATGGCGATGCGCTG
ACGGAGTTTCGGAAACAGTTGCGATTGTCACAGAGTGCTAACCTGAGTGT
CCAAGCCAGACCAGTTGCACCATCCTCCTTGCAGCAGCATAGCGGTGCAG
CAGCTAAATCCTCAGGTGAGAATTTGTTGGTGGTGTGGGTGTGGGGTCAT
CTGGCCCCAGCCTTTGGGTTCGTGTGCCTATCTGCAGGCATCGATGCAGC
TGCTGCAAGCCGCATGTTTCTGTATACAGTAGCTAGAGATGTGCTTTCTG
CTGCGAACAGGTTGTCACTGATAGGCCCTATGCAGGGAGCCCGTTTGCTT
GCCGACATATCTGGTTACGTAGATCTGCTGCTGCTGGAGAACGCTTCAAC
CGCTGAATGTATTGGATTGCCACTCGAACAACAAGTGGCACAAGTAGATC
CAGTGCTGGAGCTCCTGCAGGCATCGCACGAGCAGCTCTATTCACGTCTT
TTCAACAGCTAG
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