|
|
Homology
BLAST of jgi.p|Trimin1|165458 vs. uniprot
Match: A0A835Z220_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z220_9STRA) HSP 1 Score: 999 bits (2584), Expect = 0.000e+0 Identity = 522/522 (100.00%), Postives = 522/522 (100.00%), Query Frame = 1
Query: 1 MRDWGLTPDLECYEVALRTCGRKGEPQKAMRLLRDMKASGFPPTNGHYSNGKPSEVAAAGDAAVALLQEMRSEGVEPDSDSYFKAIKSCHDGRALDILAQQTAAGLAVEPRTYKEAIGACAKVGLWRDALRLFDDQAAAEPGAVASXXXXXXXXXXXXLMLGKRAAQLLRVLRQREHSSSNSSSGGERVSSRAYLFAIMACRGDQSTGGDWQQALQILHSIPCARVTKHQCHAALDALARGGRYKEASDLISVFMARTLVAPGVWEYTAVINAYVTGGKWQRALQLYDRMLDALPGASLLRSTHHARMKAYWEGHKRLEVLTAFEDMVEAGIAPTLMEFTLAMQACAAMVQHGDTKRYKAAANLLQEMQMLKVKPDAFLMELAADCFAAAGQAAMALQVVQEMKQMSMAVPAGLNTAVLRACAKSDQWRSVLRAMEDVIAAEPTPTQESYHLAILACCSAGRVQRAIEVLNDMLARTKGKVPPCVEQTYGVIITTAVQRKHYTLVPTLFESMAQAGVEPQAM 1566
MRDWGLTPDLECYEVALRTCGRKGEPQKAMRLLRDMKASGFPPTNGHYSNGKPSEVAAAGDAAVALLQEMRSEGVEPDSDSYFKAIKSCHDGRALDILAQQTAAGLAVEPRTYKEAIGACAKVGLWRDALRLFDDQAAAEPGAVASXXXXXXXXXXXXLMLGKRAAQLLRVLRQREHSSSNSSSGGERVSSRAYLFAIMACRGDQSTGGDWQQALQILHSIPCARVTKHQCHAALDALARGGRYKEASDLISVFMARTLVAPGVWEYTAVINAYVTGGKWQRALQLYDRMLDALPGASLLRSTHHARMKAYWEGHKRLEVLTAFEDMVEAGIAPTLMEFTLAMQACAAMVQHGDTKRYKAAANLLQEMQMLKVKPDAFLMELAADCFAAAGQAAMALQVVQEMKQMSMAVPAGLNTAVLRACAKSDQWRSVLRAMEDVIAAEPTPTQESYHLAILACCSAGRVQRAIEVLNDMLARTKGKVPPCVEQTYGVIITTAVQRKHYTLVPTLFESMAQAGVEPQAM
Sbjct: 1 MRDWGLTPDLECYEVALRTCGRKGEPQKAMRLLRDMKASGFPPTNGHYSNGKPSEVAAAGDAAVALLQEMRSEGVEPDSDSYFKAIKSCHDGRALDILAQQTAAGLAVEPRTYKEAIGACAKVGLWRDALRLFDDQAAAEPGAVASXXXXXXXXXXXXLMLGKRAAQLLRVLRQREHSSSNSSSGGERVSSRAYLFAIMACRGDQSTGGDWQQALQILHSIPCARVTKHQCHAALDALARGGRYKEASDLISVFMARTLVAPGVWEYTAVINAYVTGGKWQRALQLYDRMLDALPGASLLRSTHHARMKAYWEGHKRLEVLTAFEDMVEAGIAPTLMEFTLAMQACAAMVQHGDTKRYKAAANLLQEMQMLKVKPDAFLMELAADCFAAAGQAAMALQVVQEMKQMSMAVPAGLNTAVLRACAKSDQWRSVLRAMEDVIAAEPTPTQESYHLAILACCSAGRVQRAIEVLNDMLARTKGKVPPCVEQTYGVIITTAVQRKHYTLVPTLFESMAQAGVEPQAM 522
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| ProteomeId | Trimin1|165458|e_gw1.38.122.1 |
| Description | endonuclease activity |
| COG category | S |
| Max annot lvl | 2880.D8LMP8|- |
| EggNOG OGs | KOG4197@1|root,KOG4197@2759|Eukaryota |
| Evalue | 2.09e-07 |
| Seed ortholog | 2880.D8LMP8 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 165780 |
| Track | FilteredModels1 |
| ProteinId | 165458 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9256 ID=mRNA_9256|Name=jgi.p|Trimin1|165458|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1566bp|location=Sequence derived from alignment at Contig_38:38726..42576- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGAGAGACTGGGGACTAACTCCTGATCTGGAGTGCTACGAAGTGGCTCT GAGGACGTGCGGCAGGAAGGGGGAGCCTCAGAAGGCCATGCGCTTGCTGC GTGACATGAAGGCTTCTGGATTTCCGCCCACCAACGGGCACTACAGCAAT GGCAAACCGTCAGAAGTGGCTGCAGCGGGCGACGCAGCGGTAGCTCTGCT GCAGGAGATGCGCAGCGAGGGCGTCGAGCCCGACTCTGACTCTTACTTCA AGGCCATCAAGTCATGCCACGACGGCCGTGCTTTGGACATCTTAGCCCAG CAGACCGCAGCAGGGCTCGCGGTGGAGCCACGTACATACAAGGAGGCAAT CGGAGCGTGCGCCAAAGTGGGGCTCTGGCGTGATGCGCTGCGGCTGTTTG ACGACCAAGCTGCCGCTGAGCCCGGTGCGGTGGCGTCGCGCATGTACGAA CACGCGCTGCACGCCTGCGCAAACCTCATGCTCGGCAAGCGGGCCGCGCA GTTGCTGCGCGTGCTGCGCCAGCGAGAGCATAGCAGCAGCAACAGCAGCA GCGGCGGCGAGCGCGTCTCAAGCAGAGCGTACCTGTTTGCGATCATGGCG TGCCGCGGCGACCAGAGCACCGGCGGCGACTGGCAGCAGGCACTGCAGAT ACTGCACAGCATACCCTGCGCGCGCGTGACAAAGCACCAGTGCCATGCCG CACTCGATGCGCTCGCCAGGGGCGGCCGCTACAAGGAGGCAAGCGATCTG ATCTCGGTGTTCATGGCGCGAACGCTGGTGGCGCCGGGTGTGTGGGAGTA CACGGCCGTCATCAATGCTTATGTCACTGGGGGGAAGTGGCAGCGAGCGC TGCAGCTGTACGACAGGATGCTGGACGCTCTGCCCGGCGCGTCGCTGCTG AGGTCTACGCACCATGCACGGATGAAGGCGTACTGGGAAGGCCACAAGCG CTTGGAAGTGCTGACAGCGTTCGAAGACATGGTGGAGGCAGGCATCGCCC CCACCCTCATGGAGTTCACGCTGGCGATGCAAGCGTGTGCAGCGATGGTG CAGCATGGCGATACCAAGCGCTATAAGGCCGCAGCTAACCTCTTGCAGGA GATGCAAATGCTCAAGGTCAAGCCCGATGCATTTCTGATGGAGCTGGCAG CGGACTGCTTTGCTGCAGCCGGACAGGCAGCCATGGCCCTGCAGGTGGTG CAGGAGATGAAGCAGATGTCCATGGCAGTGCCCGCAGGCCTCAACACTGC TGTGCTGCGCGCGTGCGCCAAGAGCGACCAGTGGCGCAGCGTCCTTCGCG CCATGGAAGACGTCATTGCCGCCGAACCCACGCCAACGCAGGAGAGCTAC CACCTTGCCATACTGGCCTGCTGCAGCGCTGGTCGCGTGCAGCGTGCCAT CGAGGTCTTGAATGACATGCTGGCGCGTACAAAGGGGAAAGTGCCTCCCT GCGTGGAGCAGACGTATGGCGTCATCATCACCACAGCCGTGCAGCGCAAG CACTACACGCTCGTGCCTACTCTCTTTGAGTCCATGGCCCAAGCCGGTGT GGAGCCGCAGGCAATG back to topprotein sequence of jgi.p|Trimin1|165458 >Trimin1|165458|e_gw1.38.122.1 ID=Trimin1|165458|e_gw1.38.122.1|Name=jgi.p|Trimin1|165458|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=522bp
MRDWGLTPDLECYEVALRTCGRKGEPQKAMRLLRDMKASGFPPTNGHYSN GKPSEVAAAGDAAVALLQEMRSEGVEPDSDSYFKAIKSCHDGRALDILAQ QTAAGLAVEPRTYKEAIGACAKVGLWRDALRLFDDQAAAEPGAVASRMYE HALHACANLMLGKRAAQLLRVLRQREHSSSNSSSGGERVSSRAYLFAIMA CRGDQSTGGDWQQALQILHSIPCARVTKHQCHAALDALARGGRYKEASDL ISVFMARTLVAPGVWEYTAVINAYVTGGKWQRALQLYDRMLDALPGASLL RSTHHARMKAYWEGHKRLEVLTAFEDMVEAGIAPTLMEFTLAMQACAAMV QHGDTKRYKAAANLLQEMQMLKVKPDAFLMELAADCFAAAGQAAMALQVV QEMKQMSMAVPAGLNTAVLRACAKSDQWRSVLRAMEDVIAAEPTPTQESY HLAILACCSAGRVQRAIEVLNDMLARTKGKVPPCVEQTYGVIITTAVQRK HYTLVPTLFESMAQAGVEPQAM back to topmRNA from alignment at Contig_38:38726..42576- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9256 ID=mRNA_9256|Name=jgi.p|Trimin1|165458|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3851bp|location=Sequence derived from alignment at Contig_38:38726..42576- (Tribonema minus UTEX_B_3156 ) ATGAGAGACTGGGGACTAACTCCTGATCTGGAGTGCTACGAAGTGGCTCT
GAGGACGTGCGGCAGGAAGGGGGAGCCTCAGAAGGCCATGCGCTTGCTGC
GTGACATGAAGGCTTCTGGATTTCCGCCCACCAACGGGCACTACAGGTGA
AGGGCCCATCCTTGTGCATGTTTGAATGGTCTCAGAATGAATTGACATGC
AGGCACAAACTGCTATAGTAAACAAGAACTTCTACAACAGCGGCGACGTT
GGACACAAGCTTCTGCTTCTAATGACTGATTAGTCAATGCAGTGTGCCCA
TGCGCAGGACGACGGTGCATGTATACTTGAGCCCCCGCTCATACGCTTGC
ATGAACAGCTGACTGCGCACAGATGCCAATGCAACCATTGCCATCTACAT
CACGGATCGCTTCTGGATCGGCAGCGACCGCCAAGTCAGGTGTCTGACAT
CATGTCACAATTGCCTGCTGCTCCTGCAGGTATGTGATGCACGCCTGGAG
CAATGGCAAACCGTCAGAAGTGGCTGCAGCGGGCGACGCAGCGGTAGCTC
TGCTGCAGGAGATGCGCAGCGAGGGCGTCGAGCCCGACTCTGACTCTTAC
TTCAAGGCCATCAAGTCATGCCACGACGGCCGTGCTTTGGACATCTTAGC
CCAGCAGACCGCAGCAGGGCTCGCGGTGGAGCCACGTACATACAAGGAGG
CAATCGGAGCGTGCGCCAAAGTGGGGCTCTGGCGTGATGCGCTGCGGCTG
TTTGACGACCAAGCTGCCGCTGAGCCCGGTGCGGTGGCGTCGCGCATGTA
CGAACACGCGCTGCACGCCTGCGCAAACCTCATGCTCGGCAAGCGGGCCG
CGCAGTTGCTGCGCGTGCTGCGCCAGCGAGAGCATAGCAGCAGCAACAGC
AGCAGCGGCGGCGAGCGCGTCTCAAGCAGAGCGTACCTGTTTGCGATCAT
GGCGTGCCGCGGCGACCAGAGCACCGGCGGCGACTGGCAGCAGGCACTGC
AGATACTGCACAGCATACCCTGCGCGCGCGTGACAAAGCACCAGTGCCAT
GCCGCACTCGATGCGCTCGCCAGGGGCGGCCGCTACAAGGAGGCAAGCGA
TCTGATCTCGGTGTTCATGGCGCGAACGCTGGTGGCGCCGGGTGTGTGGG
AGTACACGGCCGTCATCAATGCTTATGTCACTGGGGGGAAGTGGCAGCGA
GCGCTGCAGCTGTACGACAGGATGCTGGACGCTCTGCCCGGCGCGTCGCT
GCTGAGGTCTACGCACCATGCACGGATGAAGGCGTACTGGGAAGGCCACA
AGGTACTGTGCTGAACAGTTCACGTACTGAACAATGCACTGTACTTCCCT
GTTTTCAACAATGCACTGTACTGAACAGTTGACTGAACGTGACACACATA
CCTACCTTTCTATGCAGTGCATACGCATATTCTATAATATTCTACAGTCA
GCCACGTGTGTGCATTTATTAGGAAGTGCACAGCTTGTTCTGCAAAGCCA
GCGCTCATACAGCCCACTGGTAAACCGCCTTTGTGCATTTGGCATAGATC
AGGTGGCGCCAGCGCACATTGTGCTCTTTAAAAGATATGCTTCATTTGGC
AGCAATGTGATGGAGTTGAATACTGCAGATGGCGTTTGAAGTGTGCGTAC
TTCAAAATCCTCAAGTGCTCGTCAGACATCAGGTCAACCCTCTATTGCGT
ACTGGCAGCATCACCAGCATCTTCATAGTAAGTACATACTGAGCTCACAA
GCCTGGTGGGCCTTGTTGTAGTACTGTGGCACAAGTTTGTGGCCGTCATG
ATTGATGTGCTGCGCATGACGCTGTGGCTGCCATTACGTGCTCAAGTGGT
GTCGCTTTTAACAGCCATCAGCCACGGTAGTATGCGTCACTGATTATCCG
TATTGTTGATACACCAGAGCCTTTTACGGCTGTTGGTGTACTTGTGTCTG
CGCCATGTATGTGTGCAGCTTTGTCACGCAATCAGCGGCCTGGTGTAGTC
ACCGCCACACCTTGATCTACACAAACATAGTTTCATTGCTCATGATGACA
CTGCAACTACACTGAAGTAGCAGAATTACAGAAGGTGTAAACAAGTAGCA
GAATGACAAAATGACTGGATTAGCAGAATGACAGTAGCAGAATGACTGCA
ATAGCAGAATGACAGAAGGTATAAACACCGCTAACATTGTCAGACATGAA
TTGTACAGTATGATAGGCAAGCACATGCTACTGTAGTGACAGTGACAAGC
ACCCTATGGTCCTGACCCTGATATCCGCTTGTGTCTCCATTTGCGCATGC
AGCGCTTGGAAGTGCTGACAGCGTTCGAAGACATGGTGGAGGCAGGCATC
GCCCCCACCCTCATGGAGTTCACGCTGGCGATGCAAGCGTGTGCAGCGAT
GGTGCAGCATGGCGATACCAAGCGCTATAAGGCCGCAGCTAACCTCTTGC
AGGAGATGCAAATGCTCAAGGTCAAGCCCGATGCATTTCTGATGGAGCTG
GCAGCGGACTGCTTTGCTGCAGCCGGACAGGCAGCCATGGCCCTGCAGGT
GACATATCAACAAATTGAAGTTGTTGTGGCGTGAAGCACATGATGTCAAG
TCAACCGCTCTGCAGCTGATGGCCGCTTTGCATCAATATGTTCGTGGGTG
ATTGCTCAGCAACATCGTGGGAGAGTCAAACCACCTATGGGCATATTGGC
ATGTCTGAATTATGTGCCCTGATGTTTTGTCGCCAGTGGCGCTGGCATGC
ACTGGGGCATTGACTCGACACGGCATCTACTGTACCATGATGAACATTGC
CATACATGACCACCTCCTGGCTATCAGATCAGTGCTGGCACAGCTGCTTG
GTGTGTGTTGCATTACGTGATGAGGTCCTTGTAGCAAGAATCAGCACACT
AATCACTGTGCAAGTTTAATGGGGACTGTGATGAGAGAAGCACCAGTAGC
CGAAAGCAAAGCTTCATGGGATCTTTTGCAGATCTATATGTGGGTGTTAC
CTCTGTTGAAGCTTCATGGCCTCGAGACAAACACACATACTGGTGGTGTG
TTTCTTGCTTGCTTCAGGAGCCTTTGCAATGTCGAACTAGCTAACGGCTG
GGCTTTGCAGACGTTGTGGGCGCGCCTTATTGTGGCACAGCACAGCATTT
GCAGGTGCACACATCTGAGATAAGACGCCAGTGCGCATACTTCGACAAAG
TAGGTTGAATTGCTCGGCCTAGCAGCAAGGCTCCGATCACATGTGGTGCC
GCAAAGCTCACTTGTAGCACCGGAAAGTCAGACTGATGCAGCGCATTGCA
TGTTCTGCATGACCATGTCATGCTTTGCGCATCACGGCATGTATGGCATT
ATCTTTGCCCTCACTCCGGACAGGATAGGCGCATCATATCTAGCAACTCA
TATACTGTTGCAGCAGTGGTGGAAGGCTGATGCGCATTTTTCTCTGCGAA
TTCTGTCACACTGGTGTGTTTTGTCGCAGGTGGTGCAGGAGATGAAGCAG
ATGTCCATGGCAGTGCCCGCAGGCCTCAACACTGCTGTGCTGCGCGCGTG
CGCCAAGAGCGACCAGTGGCGCAGCGTCCTTCGCGCCATGGAAGACGTCA
TTGCCGCCGAACCCACGCCAACGCAGGAGAGCTACCACCTTGCCATACTG
GCCTGCTGCAGCGCTGGTCGCGTGCAGCGTGCCATCGAGGTCTTGAATGA
CATGCTGGCGCGTACAAAGGGGAAAGTGCCTCCCTGCGTGGAGCAGACGT
ATGGCGTCATCATCACCACAGCCGTGCAGCGCAAGCACTACACGCTCGTG
CCTACTCTCTTTGAGTCCATGGCCCAAGCCGGTGTGGAGCCGCAGGCAAT
G back to topCoding sequence (CDS) from alignment at Contig_38:38726..42576- >mRNA_9256 ID=mRNA_9256|Name=jgi.p|Trimin1|165458|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1566bp|location=Sequence derived from alignment at Contig_38:38726..42576- (Tribonema minus UTEX_B_3156 ) ATGAGAGACTGGGGACTAACTCCTGATCTGGAGTGCTACGAAGTGGCTCT GAGGACGTGCGGCAGGAAGGGGGAGCCTCAGAAGGCCATGCGCTTGCTGC GTGACATGAAGGCTTCTGGATTTCCGCCCACCAACGGGCACTACAGCAAT GGCAAACCGTCAGAAGTGGCTGCAGCGGGCGACGCAGCGGTAGCTCTGCT GCAGGAGATGCGCAGCGAGGGCGTCGAGCCCGACTCTGACTCTTACTTCA AGGCCATCAAGTCATGCCACGACGGCCGTGCTTTGGACATCTTAGCCCAG CAGACCGCAGCAGGGCTCGCGGTGGAGCCACGTACATACAAGGAGGCAAT CGGAGCGTGCGCCAAAGTGGGGCTCTGGCGTGATGCGCTGCGGCTGTTTG ACGACCAAGCTGCCGCTGAGCCCGGTGCGGTGGCGTCGCGCATGTACGAA CACGCGCTGCACGCCTGCGCAAACCTCATGCTCGGCAAGCGGGCCGCGCA GTTGCTGCGCGTGCTGCGCCAGCGAGAGCATAGCAGCAGCAACAGCAGCA GCGGCGGCGAGCGCGTCTCAAGCAGAGCGTACCTGTTTGCGATCATGGCG TGCCGCGGCGACCAGAGCACCGGCGGCGACTGGCAGCAGGCACTGCAGAT ACTGCACAGCATACCCTGCGCGCGCGTGACAAAGCACCAGTGCCATGCCG CACTCGATGCGCTCGCCAGGGGCGGCCGCTACAAGGAGGCAAGCGATCTG ATCTCGGTGTTCATGGCGCGAACGCTGGTGGCGCCGGGTGTGTGGGAGTA CACGGCCGTCATCAATGCTTATGTCACTGGGGGGAAGTGGCAGCGAGCGC TGCAGCTGTACGACAGGATGCTGGACGCTCTGCCCGGCGCGTCGCTGCTG AGGTCTACGCACCATGCACGGATGAAGGCGTACTGGGAAGGCCACAAGCG CTTGGAAGTGCTGACAGCGTTCGAAGACATGGTGGAGGCAGGCATCGCCC CCACCCTCATGGAGTTCACGCTGGCGATGCAAGCGTGTGCAGCGATGGTG CAGCATGGCGATACCAAGCGCTATAAGGCCGCAGCTAACCTCTTGCAGGA GATGCAAATGCTCAAGGTCAAGCCCGATGCATTTCTGATGGAGCTGGCAG CGGACTGCTTTGCTGCAGCCGGACAGGCAGCCATGGCCCTGCAGGTGGTG CAGGAGATGAAGCAGATGTCCATGGCAGTGCCCGCAGGCCTCAACACTGC TGTGCTGCGCGCGTGCGCCAAGAGCGACCAGTGGCGCAGCGTCCTTCGCG CCATGGAAGACGTCATTGCCGCCGAACCCACGCCAACGCAGGAGAGCTAC CACCTTGCCATACTGGCCTGCTGCAGCGCTGGTCGCGTGCAGCGTGCCAT CGAGGTCTTGAATGACATGCTGGCGCGTACAAAGGGGAAAGTGCCTCCCT GCGTGGAGCAGACGTATGGCGTCATCATCACCACAGCCGTGCAGCGCAAG CACTACACGCTCGTGCCTACTCTCTTTGAGTCCATGGCCCAAGCCGGTGT GGAGCCGCAGGCAATG back to top
|