mRNA_7902 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349163
Unique NamemRNA_7902
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349163 vs. uniprot
Match: A0A835YUP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUP5_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.830e-52
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 3 
Query:   42 MARSAILGLLLAAGASAFIMPAAPRVPAVTCQVASAAVADAVSTDIDYESQIKKMEMEAKERIKKAFDEATVKSDAEAKERWAALEEDMRKAAASVGL 335
            MARSAILGLLLAAGASAFIMPAAPRVPAVTCQVASAAVADAVSTDIDYESQIKKMEMEAKERIKKAFDEATVKSDAEAKERWAALEEDMRKAAASVGL
Sbjct:    1 MARSAILGLLLAAGASAFIMPAAPRVPAVTCQVASAAVADAVSTDIDYESQIKKMEMEAKERIKKAFDEATVKSDAEAKERWAALEEDMRKAAASVGL 98
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BLAST of jgi.p|Trimin1|349163 vs. uniprot
Match: A0A836C7K0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7K0_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.290e-22
Identity = 66/105 (62.86%), Postives = 75/105 (71.43%), Query Frame = 3 
Query:   69 LLAAGASAFIMPAAPR-VPAVTCQVASAAVADAVSTDIDYESQIKKMEMEAKERIKKAFDEATVK---------------SDAEAKERWAALEEDMRKAAASVGL 335
            LL A ASAF+MPAAPR +P  T QVAS+ VADA+++DIDYESQIK ME+EA ERIKKAFD A V                SDAEAKERWA LE +M+ AAASVGL
Sbjct:   12 LLVAAASAFVMPAAPRSLP--TRQVASSGVADALASDIDYESQIKTMELEATERIKKAFDTAIVXXXXXXXXXXXXXXXXSDAEAKERWAKLEGEMKAAAASVGL 114
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349163 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YUP5_9STRA2.830e-52100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C7K0_9STRA1.290e-2262.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_37contigContig_37:974690..976577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349163|estExt_Genemark1.C_Ctg_370112
Hectar predicted targeting categorysignal peptide
TranscriptId349485
TrackFilteredModels1
ProteinId349163
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349163gene_7902Tribonema minus UTEX_B_3156 geneContig_37 974690..976577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349163Trimin1|349163|estExt_Genemark1.C_Ctg_370112Tribonema minus UTEX_B_3156 polypeptideContig_37 975108..976098 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7902_3exon_7902_3Tribonema minus UTEX_B_3156 exonContig_37 974690..975236 -
exon_7902_2exon_7902_2Tribonema minus UTEX_B_3156 exonContig_37 975931..976120 -
exon_7902_1exon_7902_1Tribonema minus UTEX_B_3156 exonContig_37 976559..976577 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7902UTR3_7902Tribonema minus UTEX_B_3156 three_prime_UTRContig_37 974690..975107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7902CDS_7902Tribonema minus UTEX_B_3156 CDSContig_37 975931..976098 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_7902UTR5_7902Tribonema minus UTEX_B_3156 five_prime_UTRContig_37 976559..976577 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7902 ID=mRNA_7902|Name=jgi.p|Trimin1|349163|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=756bp|location=Sequence derived from alignment at Contig_37:974690..976577- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACGACGCAAGGACACGAGATTTGAGCAACTGAACAGCACAATGGCCCGC
TCAGCTATCCTCGGTCTTCTGCTAGCGGCGGGCGCCAGCGCATTCATCAT
GCCTGCAGCCCCACGGGTCCCTGCTGTCACGTGCCAGGTGGCCTCTGCTG
CCGTGGCGGATGCCGTATCCACGGACATCGACTATGAATCGCAGATCAAG
AAGATGGAGATGGAGGCGAAGGAGCGCATCAAGAAGGCATTTGATGAGGC
CACCGTCAAGTCCGACGCGGAAGCCAAGGAGCGGTGGGCGGCGCTCGAGG
AGGACATGAGGAAGGCCGCCGCCAGCGTGGGGCTGTAACTGCCAGAACTT
CAATGTTGAAGTCTTTTAGCATGGCGGTGGCACGCGCAGGGGGCGTGATG
GCTCGTGGTGCTCGAATGCGGGCGCCGCGCTGCCCAGCAGCTGCAGCATC
TGGCGCAGCAGCGGCAGCGACGGCGGCGGCAGCAGCAGCAGCAGCGCAGC
GGTACTTGCTCGTGCTGGCTGCCGCTCGGCCGTTGTGAGTGGAGTTTGTT
GGCAGCCCGCAGTTCCGAATCCATGTGCCTGCGGCGGCGCTGTTGACTGC
AGCGTGACCGCATTGCCCTCTCAGTGCCCCAGTCTTATGTGTGCAACTAT
TACACTACGTCTAGTGAGCATGAAATGGGGCGGTTTCGCTGTCGGCCGCC
TTTGGTCACCCGTTGTATTTAAATTGATGCAGACACGAAACGATTGTGCC
AGCGTT
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protein sequence of jgi.p|Trimin1|349163

>Trimin1|349163|estExt_Genemark1.C_Ctg_370112 ID=Trimin1|349163|estExt_Genemark1.C_Ctg_370112|Name=jgi.p|Trimin1|349163|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=99bp
MARSAILGLLLAAGASAFIMPAAPRVPAVTCQVASAAVADAVSTDIDYES
QIKKMEMEAKERIKKAFDEATVKSDAEAKERWAALEEDMRKAAASVGL*
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mRNA from alignment at Contig_37:974690..976577-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7902 ID=mRNA_7902|Name=jgi.p|Trimin1|349163|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1888bp|location=Sequence derived from alignment at Contig_37:974690..976577- (Tribonema minus UTEX_B_3156 )
CACGACGCAAGGACACGAGGTGAGAGGCGCATGCGGTGTGGGCTCGGTGC
TGATCATGGACAGGAGAGGCCGTGCTTGAAGCACTCTGTAGGCCTAGTTT
GTGCAGGCTGAGGCGTGTGCGCACTATCGGCGTGCATGTTTTTGCCAAGC
AGATGCGACGATGGTCGGGCCAGCCTTGTGGCAGGCCAGCGACTCAAAAT
AGACGTAGTGACTTCTCATTGCACAATGTATCTACCATCTGCCTATACAG
AGTGGAGGATCTGTGTTCGACGGCCTGGACTTGATTGACCTTTCTCGCTG
GTTGGGAGCATCTGGTGTAAATAGCCACAGCTACGCCCCACCTTGGCTTA
TAGATCTGGAAAGCGCCAGTCACCGTTATTGCTACGATAACGCTTCTTGT
ACCTCCATCACACAATCACGACCGTGCTGCTGTTGTTTCCCTCCGTCTGA
TCTCCAGATTTGAGCAACTGAACAGCACAATGGCCCGCTCAGCTATCCTC
GGTCTTCTGCTAGCGGCGGGCGCCAGCGCATTCATCATGCCTGCAGCCCC
ACGGGTCCCTGCTGTCACGTGCCAGGTGGCCTCTGCTGCCGTGGCGGATG
CCGTATCCACGGACATCGACTATGAATCGCAGATCAAGAAGATGGAGGTG
AGGGGGTGGACAGAAAAATCCAATGAAAACTGCACAATGTGGGACTTTGA
CTTTGTGGAAAATGACATCAGCAGCTCTGCCCCTGGAGATGTGGCAATGT
GCAGGGGGCAAACGACCATTCAGCTATTGGTGTACTCAATTTCTTGTCAC
TCTGGCAGTTGGACATGCTGGATGCTGTGTTTCATTTGCAAGGCGTTCAC
TGCCCGACTTTTGTGGCTGATCGCTTGTGGATGAAGCGGTTGACAGGGGA
TGGCACTGACCTAACTGTGGCCGCATGCTCGCTCGTGTCACTTGATGATA
TGCCAGATGCAGGCCAAGCACTGCGCCCAAAAACCCTCCGATTGGATTGG
GGGAGGCCACCACCGCCGTGCCGCGTTGGCACGTCTGTGGCGCTTTGCAT
CGCTACCTCATTCACGCCCACGTCAGCGAAGCTCTTCACGCCGCACTCTG
ACGCCATGCGCCTCTGTGCTGCTCTGATGTCACTGTGCACACAAGCTCTC
CGCGCCATTCTCTGACACTATGCACGCCTCTGTGCCGCTCCGCTGTCACT
GCGTACATAAGCTCTCCATGCCATTCTCTGACACCACACACGCCTCTGTG
CTGCTCCGCCGTCACTGCACACATACACTCTCCACACCGCTCTCTGACTC
AACGCGCTTCTTCCCTGTCGCTGCGTACGCACACGCGGCAGATGGAGGCG
AAGGAGCGCATCAAGAAGGCATTTGATGAGGCCACCGTCAAGTCCGACGC
GGAAGCCAAGGAGCGGTGGGCGGCGCTCGAGGAGGACATGAGGAAGGCCG
CCGCCAGCGTGGGGCTGTAACTGCCAGAACTTCAATGTTGAAGTCTTTTA
GCATGGCGGTGGCACGCGCAGGGGGCGTGATGGCTCGTGGTGCTCGAATG
CGGGCGCCGCGCTGCCCAGCAGCTGCAGCATCTGGCGCAGCAGCGGCAGC
GACGGCGGCGGCAGCAGCAGCAGCAGCGCAGCGGTACTTGCTCGTGCTGG
CTGCCGCTCGGCCGTTGTGAGTGGAGTTTGTTGGCAGCCCGCAGTTCCGA
ATCCATGTGCCTGCGGCGGCGCTGTTGACTGCAGCGTGACCGCATTGCCC
TCTCAGTGCCCCAGTCTTATGTGTGCAACTATTACACTACGTCTAGTGAG
CATGAAATGGGGCGGTTTCGCTGTCGGCCGCCTTTGGTCACCCGTTGTAT
TTAAATTGATGCAGACACGAAACGATTGTGCCAGCGTT
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Coding sequence (CDS) from alignment at Contig_37:974690..976577-

>mRNA_7902 ID=mRNA_7902|Name=jgi.p|Trimin1|349163|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=297bp|location=Sequence derived from alignment at Contig_37:974690..976577- (Tribonema minus UTEX_B_3156 )
ATGGCCCGCTCAGCTATCCTCGGTCTTCTGCTAGCGGCGGGCGCCAGCGC
ATTCATCATGCCTGCAGCCCCACGGGTCCCTGCTGTCACGTGCCAGGTGG
CCTCTGCTGCCGTGGCGGATGCCGTATCCACGGACATCGACTATGAATCG
CAGATCAAGAAGATGGAGATGGAGGCGAAGGAGCGCATCAAGAAGGCATT
TGATGAGGCCACCGTCAAGTCCGACGCGGAAGCCAAGGAGCGGTGGGCGG
CGCTCGAGGAGGACATGAGGAAGGCCGCCGCCAGCGTGGGGCTGTAA
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