mRNA_7853 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|349149 vs. uniprot
Match: A0A835YVG9_9STRA (ENTH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVG9_9STRA) HSP 1 Score: 721 bits (1862), Expect = 3.150e-252 Identity = 656/656 (100.00%), Postives = 656/656 (100.00%), Query Frame = 3
Query: 81 MEAVQATVNKFAFKLLGTETERKLGAFLFDENVDWATSRELHGLAAYTFNDYECAVVYAMLTASMDPKNNTWRTILKAVRLVNHCVTYGAERCVDHAWDAQRQLDELTRYNSAVHSRTGALAGGGVDYGAPVREAAKEVLVLLKDTDRIRRQRAEARDTGALLPLGATDDYAAPQQTLDPLAAARRTSDTFGVVQTDALGAKFDLNSVPGMYNGRPARYFDNTADRRNHNRVEDSQRTRQYFAQDLLDLDLPTDDTSXXXXXXXXXXXXXXXXXXXXXXXSAKALADTQDLMTLSKQKLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQQGGAAGGAQGCVQGGPMQPQXXXXXXXXXSSNLLGIPGMQPNIMQXXXXXXXLQQQTMRSGSFGTAQLGGAGGMPMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPSGGAMLPISGGMYSGGMQGMGIXXXXXXXXXXXXXPXXXXAMQAMAXXXXXXXNTVQRGSMSAGGYGNGFSQGLPPXXXXXXXXXXXXXXXGGAYPXXXXXXXXXRRQWGGQGASLL 2048
MEAVQATVNKFAFKLLGTETERKLGAFLFDENVDWATSRELHGLAAYTFNDYECAVVYAMLTASMDPKNNTWRTILKAVRLVNHCVTYGAERCVDHAWDAQRQLDELTRYNSAVHSRTGALAGGGVDYGAPVREAAKEVLVLLKDTDRIRRQRAEARDTGALLPLGATDDYAAPQQTLDPLAAARRTSDTFGVVQTDALGAKFDLNSVPGMYNGRPARYFDNTADRRNHNRVEDSQRTRQYFAQDLLDLDLPTDDTSXXXXXXXXXXXXXXXXXXXXXXXSAKALADTQDLMTLSKQKLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQQGGAAGGAQGCVQGGPMQPQXXXXXXXXXSSNLLGIPGMQPNIMQXXXXXXXLQQQTMRSGSFGTAQLGGAGGMPMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPSGGAMLPISGGMYSGGMQGMGIXXXXXXXXXXXXXPXXXXAMQAMAXXXXXXXNTVQRGSMSAGGYGNGFSQGLPPXXXXXXXXXXXXXXXGGAYPXXXXXXXXXRRQWGGQGASLL
Sbjct: 1 MEAVQATVNKFAFKLLGTETERKLGAFLFDENVDWATSRELHGLAAYTFNDYECAVVYAMLTASMDPKNNTWRTILKAVRLVNHCVTYGAERCVDHAWDAQRQLDELTRYNSAVHSRTGALAGGGVDYGAPVREAAKEVLVLLKDTDRIRRQRAEARDTGALLPLGATDDYAAPQQTLDPLAAARRTSDTFGVVQTDALGAKFDLNSVPGMYNGRPARYFDNTADRRNHNRVEDSQRTRQYFAQDLLDLDLPTDDTSXXXXXXXXXXXXXXXXXXXXXXXSAKALADTQDLMTLSKQKLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQQGGAAGGAQGCVQGGPMQPQXXXXXXXXXSSNLLGIPGMQPNIMQXXXXXXXLQQQTMRSGSFGTAQLGGAGGMPMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPSGGAMLPISGGMYSGGMQGMGIXXXXXXXXXXXXXPXXXXAMQAMAXXXXXXXNTVQRGSMSAGGYGNGFSQGLPPXXXXXXXXXXXXXXXGGAYPXXXXXXXXXRRQWGGQGASLL 656
BLAST of jgi.p|Trimin1|349149 vs. uniprot
Match: D7FZF7_ECTSI (ENTH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF7_ECTSI) HSP 1 Score: 235 bits (600), Expect = 1.110e-67 Identity = 123/252 (48.81%), Postives = 156/252 (61.90%), Query Frame = 3
Query: 81 MEAVQATVNKFAFKLLGTETERKLGAFLFDENVDWATSRELHGLAAYTFNDYECAVVYAMLTASMDPKNNTWRTILKAVRLVNHCVTYGAERCVDHAWDAQRQLDELTRYNSAVHSRTGALAGGGVDYGAPVREAAKEVLVLLKDTDRIRRQRAEARDTGALLPLGATDDYAAPQQTLDPLAAARRTSDTFGVVQTDALGAKFDLNSVPGMYNGRPARYFDNTADRRNHNR-VEDSQRTRQYFAQDLLDLDL 833
+E + TV+K F + G+E+ERK+G+FLF+E +WATSRELHGLAA TFN+ ECA V A++ +++PK++TWRT+ KAVRL+ H V YGAERCVDHAWD QR+++EL RYNSA+H RT L GGG D+G PVREAA E D FG+V ++GAKFDL VPG+Y GRP RYFD+ AD R ++ VEDS TRQ A DLLDLD+
Sbjct: 3 LEELSTTVSKLTFNIFGSESERKVGSFLFNEKAEWATSRELHGLAALTFNEKECAGVMAVIGKALNPKDSTWRTLNKAVRLLRHFVLYGAERCVDHAWDHQRRIEELRRYNSAMHGRTSTLNGGGTDFGGPVREAAAE-------------------------------------------------DDAFGIVPQGSMGAKFDLKQVPGLYEGRPDRYFDDKADPRKRSQGVEDSDHTRQAQAVDLLDLDI 205
BLAST of jgi.p|Trimin1|349149 vs. uniprot
Match: A0A7S1TSE1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSE1_9STRA) HSP 1 Score: 210 bits (535), Expect = 1.040e-57 Identity = 113/252 (44.84%), Postives = 160/252 (63.49%), Query Frame = 3
Query: 78 TMEAVQATVNKFAFKLLGTETERKLGAFLFDENVDWATSRELHGLAAYTFNDYECAVVYAMLTASMDPKNNTWRTILKAVRLVNHCVTYGAERCVDHAWDAQRQLDELTRYNSAVHSRTGALAGGGVDYGAPVREAAKEVLVLLKDTDRIRRQRAEARDTGALLPLGATD-DYAAPQQTLDPLAAARRTSDTFGVVQTDALGAKFDLNSVPGMYNGRPARYFDNTADRRNHNRVEDSQRTRQYFAQDLLDLD 830
T++A+ ++ + G+ET++++G LFD+ D A+SREL+G+AA TFN +C + ML ++D + +TW+T LKA+ L+N V +G+E VD + +R++ +L YNSA S+ + GGG+D G PVRE AK++ LL TDRIR R ARD L+P+G D + AP + AA + FG V+TD+LGAKFDL++VPG+Y GRP RYF+N D R VEDS TR A DLLDLD
Sbjct: 18 TLDAMGTMSQRYRLYMSGSETQKRVGVLLFDDKEDGASSRELNGVAALTFNADQCDEIMDMLVVALDSEQSTWKTHLKALMLMNTIVVHGSEPGVDGVINLEREVQKLEVYNSATASKLHGMRGGGIDEGGPVRETAKKLASLLSSTDRIREVRRNARDPNTLVPMGEHDYERKAPSSS----AAGPGDDNAFGQVRTDSLGAKFDLSAVPGLYEGRPDRYFENPEDPRARGTVEDSSHTRNALAGDLLDLD 265
BLAST of jgi.p|Trimin1|349149 vs. uniprot
Match: A0A7R9UA05_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA05_9STRA) HSP 1 Score: 196 bits (497), Expect = 3.840e-51 Identity = 108/252 (42.86%), Postives = 158/252 (62.70%), Query Frame = 3
Query: 78 TMEAVQATVNKFAFKLLGTETERKLGAFLFDENVDWATSRELHGLAAYTFNDYECAVVYAMLTASMDPKNNTWRTILKAVRLVNHCVTYGAERCVDHAWDAQRQLDELTRYNSAVHSRTGALAGGGVDYGAPVREAAKEVLVLLKDTDRIRRQRAEARDTGALLPLGATDDYAAPQQTLDPLAAARRTSDTFGVVQTDALGAKFDLNSVPGMYNGRPARYFDNTADRR-NHNRVEDSQRTRQYFAQDLLDLD 830
++EA+ +F + G+ET+R++ +FLFD+ + +SR+L+G+AA TFN +C V M+ ++DP+ ++WRT+ K + LV +T+G+E V+ + R++ L YNSA+ S L GGGVD G PVRE A+E+ L +D ++IR R ++RD A++PLG D Y P + DP ++DTFG V + LGAKF L PG+Y GRP R+F+N AD R VEDSQ TR A+DLLDLD
Sbjct: 19 SLEAMGTMGQRFQLYMSGSETQRRVASFLFDDRDESVSSRDLNGVAALTFNAEQCKEVVDMMHVALDPQMSSWRTVKKGLMLVKTVMTHGSELAVNQLLELDRKVFPLQDYNSALASNFHTLKGGGVDAGRPVRELAREIAPLFQDMNKIRELRTQSRDERAMVPLGERD-YTRPVE--DP--GIVPSTDTFGEVSANPLGAKFTLEQTPGLYEGRPDRFFENPADTRAQRGAVEDSQHTRDALAEDLLDLD 265
BLAST of jgi.p|Trimin1|349149 vs. uniprot
Match: A0A7S2S6F2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S6F2_9STRA) HSP 1 Score: 184 bits (468), Expect = 3.310e-48 Identity = 105/238 (44.12%), Postives = 145/238 (60.92%), Query Frame = 3
Query: 135 ETERKLGAFLFDENVDWATSRELHGLAAYTFNDYECAVVYAMLTASMDPKNNTWRTILKAVRLVNHCVTYGAERCVDHAWDAQRQLDELTRYNSAVHSRTGALAGGGVDYGAPVREAAKEVLVLLKDTDRIR--RQRAEARDTGALLPLGATDDYAAPQQTLDPLAAARRTSDTFGVVQTDALGAKFDLNSVPGMYNGRPARYFDNTAD-RRNHNRVEDSQRTRQYFAQDLLDLDLPT 839
ETE+K+ L ++ A+S++LH +AA +FN+ E ++ +L A++D + N+W+T++KAV L++H V +GAERCVD AWD R ++ L +YNSA+ GG D+G PVR+ A +L LLKD + IR R+ + + G P+GA +DY AP Q +P A R S FG AL A++ + PGMY GRP RYFDN D RR VEDS TR A DLLDLD T
Sbjct: 28 ETEKKVMTLLHNDKAQSASSKDLHAMAALSFNEGEAGHLFRVLRAALDSQQNSWQTLVKAVLLLDHLVRFGAERCVDFAWDMLRVVEGLAQYNSAMVKTALGTPRGGRDFGEPVRDQAGRLLALLKDDEAIRTARRSIQTENQGIAPPIGA-EDYTAPTQ--EPTVKAGRDSRAFGSQAGIALSAQYSIEQTPGMYEGRPERYFDNQDDPRRRIGGVEDSHITRNALAGDLLDLDFGT 262
BLAST of jgi.p|Trimin1|349149 vs. uniprot
Match: A0A482RUL1_9ARCH (ENTH domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUL1_9ARCH) HSP 1 Score: 139 bits (349), Expect = 1.810e-33 Identity = 84/223 (37.67%), Postives = 119/223 (53.36%), Query Frame = 3
Query: 129 GTETERKLGAFLFDENVDWATSRELHGLAAYTFNDYECAVVYAMLTASMDPKNNTWRTILKAVRLVNHCVTYGAERCVDHAWDAQRQLDELTRYNSAVHSRTGALAGGGVDYGAPVREAAKEVLVLLKDTDRIRRQRAEARDTGALLPLGATDDYAAPQQTLDPLAAARRTSDTFGVVQTDALGAKFDLNSVPGMYNGRPARYFDNTADRRNHNRVEDSQRTR 797
G+E + LF + + L+ LAA T+N C ++A L ++ P N W+TI KA+ L++ + YG+E +D A + + L YNSA+ ++ + GG DYGAPVR A + +L + IRR R+EAR T L+PLG + PQQ L T+G ++GA F L +VPGMY GRP RYFDN +D RN N + Q TR
Sbjct: 17 GSEEGKACALILFTDQDIQMNDQRLNNLAALTYNSKSCENIFAELEKAITPTENPWKTIYKALLLLHTIILYGSELAIDKAISLCKFVHPLQAYNSALVKKS-FFSSGGTDYGAPVRATAAVITTILMKDENIRRARSEAR-TADLVPLGQAFEQHNPQQGLQM---------TYGQGLNSSVGAGFGLEAVPGMYEGRPDRYFDNESDIRNRNTTGNHQLTR 228
BLAST of jgi.p|Trimin1|349149 vs. uniprot
Match: A0A7S3HJ88_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJ88_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 2.340e-19 Identity = 52/142 (36.62%), Postives = 78/142 (54.93%), Query Frame = 3
Query: 72 GRTMEAVQATVNKFAFKLLGTETERKLGAFLFDENVDWATSRELHGLAAYTFNDYECAVVYAMLTASMDPKNNTWRTILKAVRLVNHCVTYGAERCVDHAWDAQRQLDELTRYNSAVHSRTGALAGGGVDYGAPVREAAKEV 497
G M + + K + G+E E+ G LF E + L+ LAAYT+N C ++ M+ +++P N W+TI KA+ L++ V +G+E +D A + R + L++YNSA+ R GGG DYG PVR AAK V
Sbjct: 3 GLRMGDFKIYLTKMSLAYQGSEEEKLCGNLLFSEIDVMMGDKRLNNLAAYTYNSVTCQKLFIMIEKAINPTENPWKTIYKALLLLHTIVLFGSELSIDKAIELCRFVRPLSQYNSALARRGLFSGGGGTDYGGPVRAAAKTV 144
BLAST of jgi.p|Trimin1|349149 vs. uniprot
Match: A0A6G0WVQ1_9STRA (ENTH domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WVQ1_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 7.830e-13 Identity = 53/143 (37.06%), Postives = 79/143 (55.24%), Query Frame = 3
Query: 126 LGTETERKLGAFLFDENVDW-ATSRELHGLAAYTFNDYECAVVYAMLTASMDPKNNTWRTILKAVRLVNHCVTYGAERCVDHAWDAQRQLDELTRYNSAVHSRTGALAGGGVDYGAPVREAAKEVLVLLKDTDRIRRQRAEAR 551
+GTETERKL L ++N W A+S L+ +A T+ +V + SMD + WRT+ KA+ L++H + G ER V++A D +L L+ +N G D GA VRE K++L +L D DRIR +R +A+
Sbjct: 24 MGTETERKLEEALSNKN--WGASSTLLNEIAQMTYEYESYNLVMKKVWESMDAEGRQWRTVFKALALLDHLIKNGTERVVENARDHMFKLRSLSDFN---------YYDGSADKGAGVREKVKQILEMLNDNDRIRDEREKAK 155
BLAST of jgi.p|Trimin1|349149 vs. uniprot
Match: A0A485KEE7_9STRA (Aste57867_5607 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KEE7_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 2.910e-12 Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 3
Query: 126 LGTETERKLGAFLFDENVDW-ATSRELHGLAAYTFNDYECAVVYAMLTASMDPKNNTWRTILKAVRLVNHCVTYGAERCVDHAWDAQRQLDELTRYNSAVHSRTGALAGGGVDYGAPVREAAKEVLVLLKDTDRIRRQRAEAR 551
+GT+TERKL L ++N W A+S L+ +A T+ +V + SMD + WRT+ KA+ L++H + G ER V++A D +L L+ +N G D GA VRE K++L +L D DRIR +R +A+
Sbjct: 6 MGTDTERKLEEALSNKN--WGASSTLLNEIAQLTYEYESYNLVMKKVWESMDAEGRQWRTVFKALALLDHLIKNGTERVVENARDHMFKLRSLSDFN---------YYDGSADKGAGVREKVKQILDMLNDNDRIRDERDKAK 137
BLAST of jgi.p|Trimin1|349149 vs. uniprot
Match: A0A2D4BF42_PYTIN (Eukaryotic translation initiation factor 4 gamma 2 putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF42_PYTIN) HSP 1 Score: 81.3 bits (199), Expect = 3.240e-12 Identity = 53/143 (37.06%), Postives = 80/143 (55.94%), Query Frame = 3
Query: 126 LGTETERKLGAFLFDENVDW-ATSRELHGLAAYTFNDYECAVVYAMLTASMDPKNNTWRTILKAVRLVNHCVTYGAERCVDHAWDAQRQLDELTRYNSAVHSRTGALAGGGVDYGAPVREAAKEVLVLLKDTDRIRRQRAEAR 551
LGT+ E+KL L ++N W A+S L+ +A T++ VV A + ++D WRT+ KA+ L++H + G ER V++A D +L LT ++ H G D GA VRE K++L LL D DRIR +R ++R
Sbjct: 24 LGTDVEKKLEEALSNKN--WGASSTLLNDIAQLTYDYESYNVVMAKIWEALDSHARQWRTVFKALTLLDHLIKNGTERVVENARDHMFKLRSLTDFS--YHD-------GSADKGAGVREKTKQILDLLNDNDRIREEREKSR 155 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349149 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7853 ID=mRNA_7853|Name=jgi.p|Trimin1|349149|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2154bp|location=Sequence derived from alignment at Contig_37:533190..543835- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGTCAGCGCAAAGCGGACAGGTGCCTGAGGGACTCAACAGCGCAGCGTTback to top protein sequence of jgi.p|Trimin1|349149 >Trimin1|349149|estExt_Genemark1.C_Ctg_370063 ID=Trimin1|349149|estExt_Genemark1.C_Ctg_370063|Name=jgi.p|Trimin1|349149|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=657bp MEAVQATVNKFAFKLLGTETERKLGAFLFDENVDWATSRELHGLAAYTFNback to top mRNA from alignment at Contig_37:533190..543835- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7853 ID=mRNA_7853|Name=jgi.p|Trimin1|349149|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=10646bp|location=Sequence derived from alignment at Contig_37:533190..543835- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_37:533190..543835- >mRNA_7853 ID=mRNA_7853|Name=jgi.p|Trimin1|349149|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1971bp|location=Sequence derived from alignment at Contig_37:533190..543835- (Tribonema minus UTEX_B_3156 )back to top |