Trimin1|165371|e_gw1.37.73.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|165371
Unique NameTrimin1|165371|e_gw1.37.73.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length79
Homology
BLAST of jgi.p|Trimin1|165371 vs. uniprot
Match: A0A835YU84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU84_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.040e-38
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0
Query:    1 VLGLMRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 78
            VLGLMRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN
Sbjct:    1 VLGLMRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 78          
BLAST of jgi.p|Trimin1|165371 vs. uniprot
Match: A0A835YM11_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM11_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 8.030e-19
Identity = 45/78 (57.69%), Postives = 50/78 (64.10%), Query Frame = 0
Query:    1 VLGLMRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 78
            V  LMRQ    PDT A NFALRAC G HAMQHAD+VLR M EAG+AA+  T             WQRAL+ FA+MEAN
Sbjct:   59 VRALMRQSSTPPDTPAYNFALRACGGKHAMQHADQVLREMKEAGVAANIGTFSAAFQACWHSRDWQRALDRFAEMEAN 136          
BLAST of jgi.p|Trimin1|165371 vs. uniprot
Match: A0A835YPB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPB5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 7.600e-18
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 0
Query:    1 VLGLMRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 78
            V+ LMRQCG   DT A ++AL AC G HAMQHAD++LR M  AG+AAD+HT             WQRAL+LFA++EA+
Sbjct:  115 VVALMRQCGTPLDTKAYHYALGACGGQHAMQHADQLLREMKAAGVAADQHTFAAAAHACIVSKKWQRALDLFAEIEAD 192          
BLAST of jgi.p|Trimin1|165371 vs. uniprot
Match: A0A835YTU6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTU6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.770e-17
Identity = 52/78 (66.67%), Postives = 57/78 (73.08%), Query Frame = 0
Query:    1 VLGLMRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 78
            VL LMRQCG+ PDTMACN A+RAC GSHA++HAD+V               XXXXXXXXXXXX WQRALELFADME N
Sbjct:   47 VLDLMRQCGQAPDTMACNLAIRACGGSHALEHADRVXXXXXXXXXXXXXXXXXXXXXXXXXXXDWQRALELFADMETN 124          
BLAST of jgi.p|Trimin1|165371 vs. uniprot
Match: A0A836CEM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 8.640e-13
Identity = 36/54 (66.67%), Postives = 39/54 (72.22%), Query Frame = 0
Query:   25 SGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 78
            SG HAMQHAD+VLR MAEAG+AADKHT             WQRALELFADMEA+
Sbjct:  526 SGIHAMQHADQVLRAMAEAGVAADKHTFGAALNACCHSRDWQRALELFADMEAH 579          
BLAST of jgi.p|Trimin1|165371 vs. uniprot
Match: A0A835Z0W7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0W7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 8.030e-8
Identity = 29/70 (41.43%), Postives = 39/70 (55.71%), Query Frame = 0
Query:    9 GRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 78
            G  PD  + N AL A     AMQ+AD++L +MA AG+A D+ T             W RA+++F DMEAN
Sbjct:    1 GLPPDVKSHNLALYAWCSDGAMQNADRILASMAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEAN 70          
BLAST of jgi.p|Trimin1|165371 vs. uniprot
Match: A0A835ZAQ1_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ1_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.190e-7
Identity = 27/74 (36.49%), Postives = 40/74 (54.05%), Query Frame = 0
Query:    5 MRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 78
            M Q G   +    N A  AC  S A+Q AD++L ++A AG+A ++ T             W+RA+++F DMEAN
Sbjct:    1 MSQAGVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFARVLRACRYSRDWRRAIDVFRDMEAN 74          
BLAST of jgi.p|Trimin1|165371 vs. uniprot
Match: A0A835ZBY4_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY4_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.020e-6
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 0
Query:    5 MRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 78
            M Q G   +    N AL+AC  S A+Q AD++L +MA AG       XXXXXXXXXXX  W+RA+++F DMEAN
Sbjct:    1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEAN 74          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165371 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835YU84_9STRA1.040e-38100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YM11_9STRA8.030e-1957.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YPB5_9STRA7.600e-1853.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTU6_9STRA1.770e-1766.67Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CEM6_9STRA8.640e-1366.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0W7_9STRA8.030e-841.43Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZAQ1_9STRA1.190e-736.49PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835ZBY4_9STRA5.020e-651.35PPR_long domain-containing protein (Fragment) n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..78
e-value: 1.2E-14
score: 56.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 48..78
score: 8.53891

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_37contigContig_37:23183..23419 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165371mRNA_7803Tribonema minus UTEX_B_3156 mRNAContig_37 23183..23419 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|165371|e_gw1.37.73.1 ID=Trimin1|165371|e_gw1.37.73.1|Name=jgi.p|Trimin1|165371|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=79bp
VLGLMRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKH
TFTAALKACWHSHDWQRALELFADMEAN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat