mRNA_7803 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|165371 vs. uniprot
Match: A0A835YU84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU84_9STRA) HSP 1 Score: 132 bits (331), Expect = 1.040e-38 Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1
Query: 1 VLGLMRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 234
VLGLMRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN
Sbjct: 1 VLGLMRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 78
BLAST of jgi.p|Trimin1|165371 vs. uniprot
Match: A0A835YM11_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM11_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 8.030e-19 Identity = 45/78 (57.69%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 1 VLGLMRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 234
V LMRQ PDT A NFALRAC G HAMQHAD+VLR M EAG+AA+ T WQRAL+ FA+MEAN
Sbjct: 59 VRALMRQSSTPPDTPAYNFALRACGGKHAMQHADQVLREMKEAGVAANIGTFSAAFQACWHSRDWQRALDRFAEMEAN 136
BLAST of jgi.p|Trimin1|165371 vs. uniprot
Match: A0A835YPB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPB5_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 7.600e-18 Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 VLGLMRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 234
V+ LMRQCG DT A ++AL AC G HAMQHAD++LR M AG+AAD+HT WQRAL+LFA++EA+
Sbjct: 115 VVALMRQCGTPLDTKAYHYALGACGGQHAMQHADQLLREMKAAGVAADQHTFAAAAHACIVSKKWQRALDLFAEIEAD 192
BLAST of jgi.p|Trimin1|165371 vs. uniprot
Match: A0A835YTU6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTU6_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 1.770e-17 Identity = 52/78 (66.67%), Postives = 57/78 (73.08%), Query Frame = 1
Query: 1 VLGLMRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 234
VL LMRQCG+ PDTMACN A+RAC GSHA++HAD+V XXXXXXXXXXXX WQRALELFADME N
Sbjct: 47 VLDLMRQCGQAPDTMACNLAIRACGGSHALEHADRVXXXXXXXXXXXXXXXXXXXXXXXXXXXDWQRALELFADMETN 124
BLAST of jgi.p|Trimin1|165371 vs. uniprot
Match: A0A836CEM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM6_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 8.640e-13 Identity = 36/54 (66.67%), Postives = 39/54 (72.22%), Query Frame = 1
Query: 73 SGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 234
SG HAMQHAD+VLR MAEAG+AADKHT WQRALELFADMEA+
Sbjct: 526 SGIHAMQHADQVLRAMAEAGVAADKHTFGAALNACCHSRDWQRALELFADMEAH 579
BLAST of jgi.p|Trimin1|165371 vs. uniprot
Match: A0A835Z0W7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0W7_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 8.030e-8 Identity = 29/70 (41.43%), Postives = 39/70 (55.71%), Query Frame = 1
Query: 25 GRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 234
G PD + N AL A AMQ+AD++L +MA AG+A D+ T W RA+++F DMEAN
Sbjct: 1 GLPPDVKSHNLALYAWCSDGAMQNADRILASMAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEAN 70
BLAST of jgi.p|Trimin1|165371 vs. uniprot
Match: A0A835ZAQ1_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ1_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 1.190e-7 Identity = 27/74 (36.49%), Postives = 40/74 (54.05%), Query Frame = 1
Query: 13 MRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHTXXXXXXXXXXXXXWQRALELFADMEAN 234
M Q G + N A AC S A+Q AD++L ++A AG+A ++ T W+RA+++F DMEAN
Sbjct: 1 MSQAGVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFARVLRACRYSRDWRRAIDVFRDMEAN 74 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165371 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7803 ID=mRNA_7803|Name=jgi.p|Trimin1|165371|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=237bp|location=Sequence derived from alignment at Contig_37:23183..23419- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGTTGGGCCTCATGCGGCAGTGTGGCAGGGGCCCGGACACAATGGCATGback to top protein sequence of jgi.p|Trimin1|165371 >Trimin1|165371|e_gw1.37.73.1 ID=Trimin1|165371|e_gw1.37.73.1|Name=jgi.p|Trimin1|165371|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=79bp VLGLMRQCGRGPDTMACNFALRACSGSHAMQHADKVLRTMAEAGLAADKHback to top mRNA from alignment at Contig_37:23183..23419- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7803 ID=mRNA_7803|Name=jgi.p|Trimin1|165371|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=237bp|location=Sequence derived from alignment at Contig_37:23183..23419- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_37:23183..23419- >mRNA_7803 ID=mRNA_7803|Name=jgi.p|Trimin1|165371|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=237bp|location=Sequence derived from alignment at Contig_37:23183..23419- (Tribonema minus UTEX_B_3156 )back to top |