mRNA_7850 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165315
Unique NamemRNA_7850
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|165315 vs. uniprot
Match: A0A836CF95_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF95_9STRA)

HSP 1 Score: 269 bits (688), Expect = 2.370e-91
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    1 MEHSGRDGVLSQLHRLKESFLLAAAKGGRVDECRSLLELGADVNWSSPEQDTCLLAACRYGHQAAAFLLLDKGAVISARCSGSGNTALHLCCEVGMEELALELLQRGADLALKNNAGLTAVDLALAAGHAALAHRL 408
            MEHSGRDGVLSQLHRLKESFLLAAAKGGRVDECRSLLELGADVNWSSPEQDTCLLAACRYGHQAAAFLLLDKGAVISARCSGSGNTALHLCCEVGMEELALELLQRGADLALKNNAGLTAVDLALAAGHAALAHRL
Sbjct:    1 MEHSGRDGVLSQLHRLKESFLLAAAKGGRVDECRSLLELGADVNWSSPEQDTCLLAACRYGHQAAAFLLLDKGAVISARCSGSGNTALHLCCEVGMEELALELLQRGADLALKNNAGLTAVDLALAAGHAALAHRL 136
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BLAST of jgi.p|Trimin1|165315 vs. uniprot
Match: B5YP31_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YP31_THAPS)

HSP 1 Score: 83.6 bits (205), Expect = 4.060e-16
Identity = 55/129 (42.64%), Postives = 72/129 (55.81%), Query Frame = 1 
Query:   37 LHRLKESFLLAAAKGGRVDECRSLLELGADVNWSSPEQ----DTCLLAACRYGHQAAAFLLLDKGAVISARCSGSGNTALHLCCEVGMEELALELLQRGADLA-LKNNAGLTAVDLALAAGHAALAHRL 408
            + RLKESFL AAAKGGR+ E  SLL+ GA+  W         DT L+AA R GH+    LLL  GA  + R   +GNT LHL    G E +        ++L+ + NN G+TAVD+A+  G+   A  L
Sbjct:   14 IDRLKESFLCAAAKGGRLQEVASLLDFGAETEWHDTSNENTSDTPLVAAVRSGHKDVVALLLAHGADPTRR-DQNGNTVLHLVAASGDEGMVSLFAPSASELSNITNNDGMTAVDIAVQRGYTLFAELL 141
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BLAST of jgi.p|Trimin1|165315 vs. uniprot
Match: D7FNM2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM2_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 4.330e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   25 VLSQLHRLKESFLLAAAKGGRVDECRSLLELGADVNWSSPEQDTCLL 165
            VLSQL RLKESFL AAAKGGRV+EC SLLE+G D+NW SPE DT LL
Sbjct:   10 VLSQLDRLKESFLWAAAKGGRVEECESLLEMGTDINWVSPEGDTPLL 56
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BLAST of jgi.p|Trimin1|165315 vs. uniprot
Match: A0A8J2SNL1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNL1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.660e-13
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:   34 QLHRLKESFLLAAAKGGRVDECRSLLELGADVNW-SSPEQDTCLLAACRYGHQAAAFLLLDKG 219
            QL R+KESFL AAAKGGR +E  SLL +GADVNW +  E +T L+AACR GH+  A LLL  G
Sbjct:    6 QLDRMKESFLWAAAKGGREEEVESLLSIGADVNWRNGDEGETPLIAACRSGHRGVAALLLAHG 68
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BLAST of jgi.p|Trimin1|165315 vs. uniprot
Match: A0A7S1U254_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U254_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.410e-9
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   13 GRDGVLSQLHRLKESFLLAAAKGGRVDECRSLLELGADVNWSSPEQDT 156
            G   + S L RLKESFL AAA+GGR +EC SLLE+GADVNW+    D+
Sbjct:    3 GLGDLTSHLERLKESFLWAAARGGREEECESLLEMGADVNWTHQNGDS 50
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BLAST of jgi.p|Trimin1|165315 vs. uniprot
Match: F4G874_ALIDK (Ankyrin n=4 Tax=Alicycliphilus denitrificans TaxID=179636 RepID=F4G874_ALIDK)

HSP 1 Score: 59.7 bits (143), Expect = 4.330e-8
Identity = 46/123 (37.40%), Postives = 61/123 (49.59%), Query Frame = 1 
Query:   52 ESFLLAAAKGGRVDECRSLLELGADVN---W-------SSPEQDTCLLAACRYGHQAAAFLLLDKGAVISARCSGSGNTALHLCCEVGMEELALELLQRGADLALKNNAGLTAVDLALAAGHA 390
            ES L+ AA  G +   R+L+ L ADVN   W       S   QD   + A          LLL++ A I A  S +G T L +    G  ++AL L++ GAD  LKN+ GLTA+D A  A  A
Sbjct:   95 ESALMLAALRGNLSAARALIRLDADVNKTGWTPLHYAASGTTQDAAAMVA----------LLLEESAYIDA-ASPNGTTPLMMAVRYGTGDVALLLIEEGADPTLKNDLGLTAIDFARQADRA 206
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BLAST of jgi.p|Trimin1|165315 vs. uniprot
Match: A0A1B4V0S4_9GAMM (Ankyrin repeat protein putative n=2 Tax=Sulfurifustis variabilis TaxID=1675686 RepID=A0A1B4V0S4_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 6.480e-8
Identity = 41/112 (36.61%), Postives = 58/112 (51.79%), Query Frame = 1 
Query:   61 LLAAAKGGRVDECRSLLELGADVNWSSP---EQDTCLLAACRYGHQAAAFLLLDKGAVISARCSGSGNTALHLCCEVGMEELALELLQRGADLALKNNAGLTAVDLALAAGH 387
            L+ AA+ G++D+ + LLE GA+VN       E  T L  A  YGH A   LL++ GA ++ R     NT L +    G  +    LL+ GAD   K ++G TA+  A   GH
Sbjct:   15 LIVAARKGKIDKVKELLEKGANVNAKEKVTGEGYTALFHAASYGHTAIVKLLIENGASVNER--PGRNTPLIIAAWGGYPDTVQVLLEAGADPNAKADSGWTALAEAARKGH 124
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BLAST of jgi.p|Trimin1|165315 vs. uniprot
Match: A0A485KZH4_9STRA (Aste57867_13852 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZH4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.330e-7
Identity = 41/123 (33.33%), Postives = 61/123 (49.59%), Query Frame = 1 
Query:   13 GRDGVLSQLHRLKESFLLA-----AAKGGRVDECRSLLELGADVNWSSPEQDTCLLAACRYGHQAAAFLLLDKGAVISARCSGSGNTALHLCCEVGMEELALELLQRGADLALKNNAGLTAVD 366
            G D +   + RL    LL      A + G +D  R +L LG DVN  S       +AA       A FL+   GA +    +  G+T LH+ C  G  E+ + LL+ GA+ A++N+AG TA++
Sbjct:  226 GFDALNGLVRRLVGGILLVGGTRHACQDGNLDRLRDMLALGPDVNTVSTFLTPLGVAADMNAPVVADFLVTSAGAAVDGVMAW-GHTPLHVACRAGHVEMVMLLLRAGANAAIRNDAGRTALE 347
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BLAST of jgi.p|Trimin1|165315 vs. uniprot
Match: A0A4V1QZ76_9BURK (Uncharacterized protein n=2 Tax=Verminephrobacter TaxID=364316 RepID=A0A4V1QZ76_9BURK)

HSP 1 Score: 57.8 bits (138), Expect = 2.130e-7
Identity = 45/119 (37.82%), Postives = 59/119 (49.58%), Query Frame = 1 
Query:   52 ESFLLAAAKGGRVDECRSLLELGADVNWSSPEQDTCLLAACRYGHQAAAFLLLDKGAVISARCSGSGNTALHLCCEVGMEELALELLQRGADLALKNNAGLTAVDLALAAGHAALAHRL 408
            ES L+ AA  G V   ++LL   ADVN +         +A    H     LLL+  A I A  S +G+T L +  + G  E    LLQ GAD ALKN  GL+A+D AL  G    A ++
Sbjct:   91 ESPLMMAAIKGHVAAVKALLARSADVNKTGWAPLHYAASAGSPEHLLIIGLLLENHAYIDA-ASPNGSTPLMMAAQYGSTEAVQLLLQEGADPALKNQLGLSAIDFALRVGRVDAAEKI 208
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BLAST of jgi.p|Trimin1|165315 vs. uniprot
Match: A0A382FAM1_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382FAM1_9ZZZZ)

HSP 1 Score: 58.2 bits (139), Expect = 3.140e-7
Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = 1 
Query:   55 SFLLAAAKGGRVDECRSLLELGADVNWSSPEQDTCLLAACRYGHQAAAFLLLDKGAVISARCSGSGNTALHLCCEVGMEELALELLQRGAD 327
            S LL AA+ GR+D  R LL+ GADVN ++P  ++ L+ A   G    A  LL++GA  +A  + +G TALH     G  EL   L   GAD
Sbjct:  137 SPLLFAARHGRIDSARLLLDAGADVNETAPNGESALVRASFSGQGMFAAFLLERGADPNA--ADAGYTALHTAVSRGDLELVKALCAGGAD 225
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165315 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CF95_9STRA2.370e-91100.00Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
B5YP31_THAPS4.060e-1642.64Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
D7FNM2_ECTSI4.330e-1478.72Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A8J2SNL1_9STRA4.660e-1361.90Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1U254_9STRA1.410e-960.42Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F4G874_ALIDK4.330e-837.40Ankyrin n=4 Tax=Alicycliphilus denitrificans TaxID... [more]
A0A1B4V0S4_9GAMM6.480e-836.61Ankyrin repeat protein putative n=2 Tax=Sulfurifus... [more]
A0A485KZH4_9STRA1.330e-733.33Aste57867_13852 protein n=1 Tax=Aphanomyces stella... [more]
A0A4V1QZ76_9BURK2.130e-737.82Uncharacterized protein n=2 Tax=Verminephrobacter ... [more]
A0A382FAM1_9ZZZZ3.140e-741.76Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_37contigContig_37:514860..516870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165315|e_gw1.37.63.1
Descriptionankyrin repeats
COG categoryS
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota,2XGNI@2836|Bacillariophyta
Evalue6.66e-17
Seed ortholog35128.Thaps6638
Hectar predicted targeting categoryother localisation
TranscriptId165637
TrackFilteredModels1
ProteinId165315
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165315gene_7850Tribonema minus UTEX_B_3156 geneContig_37 514860..516870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165315Trimin1|165315|e_gw1.37.63.1Tribonema minus UTEX_B_3156 polypeptideContig_37 514860..516870 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7850_4exon_7850_4Tribonema minus UTEX_B_3156 exonContig_37 514860..514948 -
exon_7850_3exon_7850_3Tribonema minus UTEX_B_3156 exonContig_37 515379..515480 -
exon_7850_2exon_7850_2Tribonema minus UTEX_B_3156 exonContig_37 515798..515927 -
exon_7850_1exon_7850_1Tribonema minus UTEX_B_3156 exonContig_37 516784..516870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7850CDS_7850Tribonema minus UTEX_B_3156 CDSContig_37 516784..516870 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7850 ID=mRNA_7850|Name=jgi.p|Trimin1|165315|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=408bp|location=Sequence derived from alignment at Contig_37:514860..516870- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCACAGCGGCCGGGATGGTGTACTTTCTCAGCTGCATAGGCTGAA
AGAGTCCTTCCTGCTGGCTGCGGCCAAAGGCGGCAGGGTGGACGAGTGCA
GGAGCTTGCTAGAGCTGGGTGCAGATGTGAACTGGAGCTCACCGGAGCAG
GACACGTGTTTGCTGGCAGCATGCAGATACGGGCACCAGGCTGCAGCGTT
TTTGCTCCTCGACAAAGGTGCTGTAATCTCAGCCCGCTGCTCCGGCTCCG
GGAACACCGCTCTGCACCTGTGCTGCGAGGTTGGCATGGAGGAGCTGGCA
CTGGAGCTGCTACAACGAGGCGCTGACCTTGCACTGAAGAACAACGCGGG
TCTCACCGCCGTGGATCTGGCTCTGGCGGCCGGGCACGCAGCGCTGGCTC
ACAGACTG
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protein sequence of jgi.p|Trimin1|165315

>Trimin1|165315|e_gw1.37.63.1 ID=Trimin1|165315|e_gw1.37.63.1|Name=jgi.p|Trimin1|165315|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=136bp
MEHSGRDGVLSQLHRLKESFLLAAAKGGRVDECRSLLELGADVNWSSPEQ
DTCLLAACRYGHQAAAFLLLDKGAVISARCSGSGNTALHLCCEVGMEELA
LELLQRGADLALKNNAGLTAVDLALAAGHAALAHRL
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mRNA from alignment at Contig_37:514860..516870-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7850 ID=mRNA_7850|Name=jgi.p|Trimin1|165315|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2011bp|location=Sequence derived from alignment at Contig_37:514860..516870- (Tribonema minus UTEX_B_3156 )
ATGGAGCACAGCGGCCGGGATGGTGTACTTTCTCAGCTGCATAGGCTGAA
AGAGTCCTTCCTGCTGGCTGCGGCCAAAGGCGGCAGGGTAAGGGAGCTAT
AATCGATGCACGCATGATCATGCTCTGTACGTCTTGTGCGGGAGCACCTG
CTTCGACACCTGAACACCAAGCTGTGTAAACACTAAGAGATTCCAGCAAT
TACATAAACTGCCGAGCATATGTCGTCGTCAGAGCAGTGAGCCGCTACGC
GCCTGCATAGTTCTGCAGTTCTGTTCACATGTTGACGAAGGCACACACAT
TCAAATTCCTTGCTTCAACAAGTGGGGGGCGTAAAACAAGGTGCACGCAG
CAGTTGCAGCATATACATTCCTCAGATGTCAATAAAAAGTAGTTCGTGGT
GCCGTTCATCACGAAGCGAAGGCAAGCGCGAGAAACTTCTGTTGGCCACC
GAATAGTACAGGCATCTCAGCTACTCCTCGGCGTAGAGTAAATGTGTTGT
TATTTTTCGTGCACATAATCGCTGATGAACATAGTTGTGCTGCACAAACT
GCGCTGCTGTGTTCATGCACGTACTCCATGAGGAACATTGTCATGCTGCA
CAATTTGTCCAATGTAGCGAAGCATTCACTGAGTGCTCAACAGGAGTCAC
AGTCTGCCATTCGGTGCTTGCCTTTCAGTTCTCGCTGGGACTACTGAGGC
CTGCTGCGAATCTGGTTATTGCCATTCTTTAAGGGGTGCTTTGCAAAGAT
GTGTGATACCCATAAGCATGATGGAGCTATGTGAAATGCCTCACAATGAC
CTGGGGCTGGGCTCAACCTCCATGAGATGAACAATAAACGTGCTTGTCTG
GCATGACTGGAGATGTATACGTAGCATGACGCAGTTCACACGTGTTGCAC
ATACTGATTGCCACAACTCCGATACTGTACCTTGCCCTGTCAGGTGGACG
AGTGCAGGAGCTTGCTAGAGCTGGGTGCAGATGTGAACTGGAGCTCACCG
GAGCAGGACACGTGTTTGCTGGCAGCATGCAGATACGGGCACCAGGCTGC
AGCGTTTTTGCTCCTCGACAAAGGTAAAAATTCCACTAGACTCTGGGTGA
TGGTCATAACTTCTTACAACAAACTCATTATTAAGTTGTTGATGTTGTTT
CTAAGTTGCAGTTCATGAGAGCAAAAGAAGTGCCTGCTAGCGGCATTCAT
ATATGGGCACCAGGCAGCAGCGTGCTTACTGAACAAAGGTAAGACTTCAA
CTTTAAGTTAAAGATGATGGCCACACTGACTACTTCCGACAAAGTCATTG
TTTCAACCAAGGGTTGTCGATTATTAGGAGTCTGCATTCATAGCTCAATC
TAACCCTGGTCCTTGCTCTACCCCTTGCCTTGGCCCTAAGGTGCTGTAAT
CTCAGCCCGCTGCTCCGGCTCCGGGAACACCGCTCTGCACCTGTGCTGCG
AGGTTGGCATGGAGGAGCTGGCACTGGAGCTGCTACAACGAGGTATGCCC
GATGCTTTGAATGTCATCTATTAGGGTTAGGGTTAGGGTTAAAGAAGCTG
CGCGTCCAGACTGTTGTTGTCAACCTTAATTTATACCTAAGAGTATTCAC
TGACAAGTATACTGCTCGATTATACATTTGACAGCCTTGTGCCTTCCACG
TCAAGGGTGTTGTGCGGCACTGCAATCCGGATTGTAACCTCAGTACGCAG
TACAAAAGCAGTGCTTACAACAAAACAGACATTGCATCCGTGGGGCTTTG
GGGATTGTGCTGCTTCCACACAAACAGAGCAGACCTGTGTTATGTACCCT
TTTGAAGCGCTGTACTCAAAAAGTCCAGTACCAAATTGCAACCCCAAATC
AGCGAACCTACCTGCGCACGTTCTGCAATCCCTGACACGCACTAAACCAC
TTCTCGGCAACCTTCTGTGCAGGCGCTGACCTTGCACTGAAGAACAACGC
GGGTCTCACCGCCGTGGATCTGGCTCTGGCGGCCGGGCACGCAGCGCTGG
CTCACAGACTG
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Coding sequence (CDS) from alignment at Contig_37:514860..516870-

>mRNA_7850 ID=mRNA_7850|Name=jgi.p|Trimin1|165315|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=408bp|location=Sequence derived from alignment at Contig_37:514860..516870- (Tribonema minus UTEX_B_3156 )
ATGGAGCACAGCGGCCGGGATGGTGTACTTTCTCAGCTGCATAGGCTGAA
AGAGTCCTTCCTGCTGGCTGCGGCCAAAGGCGGCAGGGTGGACGAGTGCA
GGAGCTTGCTAGAGCTGGGTGCAGATGTGAACTGGAGCTCACCGGAGCAG
GACACGTGTTTGCTGGCAGCATGCAGATACGGGCACCAGGCTGCAGCGTT
TTTGCTCCTCGACAAAGGTGCTGTAATCTCAGCCCGCTGCTCCGGCTCCG
GGAACACCGCTCTGCACCTGTGCTGCGAGGTTGGCATGGAGGAGCTGGCA
CTGGAGCTGCTACAACGAGGCGCTGACCTTGCACTGAAGAACAACGCGGG
TCTCACCGCCGTGGATCTGGCTCTGGCGGCCGGGCACGCAGCGCTGGCTC
ACAGACTG
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