mRNA_7900 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165313
Unique NamemRNA_7900
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A835YW29_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW29_9STRA)

HSP 1 Score: 300 bits (769), Expect = 4.220e-103
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1
Query:    1 MAAFPLGARCWCPLCHDPIAPVTCGFYACAWTYDGAKEGGELVRGAWRTAGGDKYERFRESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDSKEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRECSHASCSKCPTSRAAL 462
            MAAFPLGARCWCPLCHDPIAPVTCGFYACAWTYDGAKEGGELVRGAWRTAGGDKYERFRESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDSKEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRECSHASCSKCPTSRAAL
Sbjct:    1 MAAFPLGARCWCPLCHDPIAPVTCGFYACAWTYDGAKEGGELVRGAWRTAGGDKYERFRESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDSKEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRECSHASCSKCPTSRAAL 154          
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A835ZEG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEG5_9STRA)

HSP 1 Score: 247 bits (630), Expect = 5.500e-78
Identity = 123/158 (77.85%), Postives = 130/158 (82.28%), Query Frame = 1
Query:    1 MAAFPLGARCWCPLCHDPIAPVTCGFYACAWTYDGAKEGGELVRGAWRTAGGDKYERFRESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDSKEAAA----DECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRECSHASCSKCPTSRAAL 462
            MAAFPLG+RC CP+C   I PVTCGF ACAWTYDGAKE GELVRGAWRTAG DKYERFRESDN+ATWSRLVLVAKPA++VK +PGAAVADAVD+KEAA     DECAV LRGFG           TRCGHRYHALCLA WRECSHASCSKCPT RAAL
Sbjct:  291 MAAFPLGSRCTCPMCGSAITPVTCGFNACAWTYDGAKEDGELVRGAWRTAGDDKYERFRESDNMATWSRLVLVAKPAVKVKSDPGAAVADAVDNKEAAGASEPDECAVGLRGFGGRSGAVTT---TRCGHRYHALCLAGWRECSHASCSKCPTCRAAL 445          
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A835ZBQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ4_9STRA)

HSP 1 Score: 229 bits (584), Expect = 1.350e-71
Identity = 112/158 (70.89%), Postives = 125/158 (79.11%), Query Frame = 1
Query:    1 MAAFPLGARCWCPLCHDPIAPVTCGFYACAWTYDGAKEGGELVRGAWRTAGGDKYERFRESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDSKEAAA----DECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRECSHASCSKCPTSRAAL 462
            MAAFPLG+ C CP+C+  I PVTCGFYACAWTYDGAKEGGELVRGAWRTAG DKY+RFRESDN+ TWSRLVLVAKPA++VK +P A  A++  + +AA     DECAVCLRGFG           T CG+RYHALCLASWRECSHASCSKCPT RA L
Sbjct:  244 MAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAKEGGELVRGAWRTAGDDKYDRFRESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGRLQPDECAVCLRGFGSGDGSSKATS-TPCGYRYHALCLASWRECSHASCSKCPTCRAVL 400          
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A836C8N2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 5.600e-33
Identity = 71/151 (47.02%), Postives = 84/151 (55.63%), Query Frame = 1
Query:    1 MAAFPLGARCWCPLCHDPIAPVTCGFYACAWTYDGAKEGGELVRGAWRTAGGDKYERFRESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDS-KEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRECS-HASCSKCPT 447
            M AF LG++C CP C   + PVTCGFYAC W Y+GAK  G L+R  W TA  D Y R  E  N+A+WSRLVLVAKP            +DA D  K+A   ECAVCL                 CGHRY+A CL  W+E S  A+C+ C T
Sbjct:  173 MNAFTLGSQCACPECGADVTPVTCGFYACTWMYEGAKTDGMLMRSPWHTASDDLYHRVNEHGNMASWSRLVLVAKPI----------ASDAQDKDKDALPSECAVCLMPLAAAEHTVTRA----CGHRYYATCLQRWQESSIGATCTACRT 309          
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A329REX1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329REX1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.540e-15
Identity = 52/148 (35.14%), Postives = 68/148 (45.95%), Query Frame = 1
Query:   34 CPLCHDPIAPVTCGFYACAWTYDGAKE-GGELVRGAWRTAGGDKYERFRESDNI--ATWSRLVLVAKPA---IRVKLEPGAAVADAVDSKEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRE-CSHA-SCSKCPTSR 453
            CP+C   + P TCGFY CAW ++G +E  G  +   W+ A G KY RF    N   A W  L++VAKP      VKL P A  A    +     D+C +C   FG             CGH +H  C+  W   C+ + S   CP  R
Sbjct:  252 CPMCFAKVKPRTCGFYECAWKFEGVQERDGYTIISQWKDACGHKYHRFNAGKNYGSAEWESLLIVAKPREGPTAVKLSPTAQSAGLNKT-----DKCTICWSEFGSTASVFIVTVG--CGHSFHCACIDKWSGWCAKSDSLPSCPVCR 392          
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A6A3IE52_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3IE52_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.520e-14
Identity = 48/147 (32.65%), Postives = 70/147 (47.62%), Query Frame = 1
Query:   34 CPLCHDPIAPVTCGFYACAWTYDGAK-EGGELVRGAWRTAGGDKYERFR--ESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDSKEAAAD-ECAVC----LRGFGXXXXXXXXXXXTRCGHRYHALCLASWRECSHA--SCSKCP 444
            CP C   + PVTCGFY CAW ++G K  GG      W+   G+KY+RF   E+     W  L+++ KP   +K    A + ++       +D  CAVC    L G G           + CGH +H  C+ +W + S    + +KCP
Sbjct:  249 CPKCRSKVKPVTCGFYDCAWKFEGVKARGGFFTSSPWQIVSGEKYQRFDADETSGSIEWESLLILVKP---LKEAVAAELVESAQEARLHSDLVCAVCWTEILSGSGAG---------SECGHLFHCGCIENWSKWSEGQKTLTKCP 383          
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A833WHP8_PHYIN (Ring finger domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WHP8_PHYIN)

HSP 1 Score: 79.0 bits (193), Expect = 2.530e-14
Identity = 47/133 (35.34%), Postives = 64/133 (48.12%), Query Frame = 1
Query:   34 CPLCHDPIAPVTCGFYACAWTYDGAKEGGEL-VRGAWRTAGGDKYERFRESDNIAT--WSRLVLVAKP---AIRVKLEPGAAVADAVDSKEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRE 414
            CP+C  P  P+TCGFY CAW +DG +   +  +   WR A G+KY RF      AT  W  L++VAK    AI V++ PG + +  V         C++C   FG             CGH +H  C+  W E
Sbjct:  247 CPICKKPFPPITCGFYNCAWKFDGKRSRDDFSISSTWRNARGEKYYRFDTDQAEATVKWDSLLIVAKSKRDAIAVQM-PGFSRSAVVRKSNV----CSICWAPFGLRRDQCLRTGD--CGHTFHRGCIRVWSE 372          
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: W2Q0Y3_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2Q0Y3_PHYPN)

HSP 1 Score: 75.1 bits (183), Expect = 6.080e-13
Identity = 42/127 (33.07%), Postives = 61/127 (48.03%), Query Frame = 1
Query:   34 CPLCHDPIAPVTCGFYACAWTYDGAKE-GGELVRGAWRTAGGDKYERFRESDNIAT--WSRLVLVAKP---AIRVKLEPGAAVADAVDSKEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALC 396
            CP+C   + P TCGFY CAW ++G ++  G  +   W+ A G+KY  F+   N  +  W  L++VAKP   ++ +KL P A          A  D+C +C   FG             CGH +H  C
Sbjct:  250 CPMCFTNVKPRTCGFYNCAWKFEGVQQQDGFTIISQWKDAYGEKYHLFKAGKNYGSVEWESLLIVAKPREGSMAIKLSPAA--------PPARNDKCTICWSDFGSTASGYIVTFG--CGHSFHRAC 366          
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A080ZZG9_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A080ZZG9_PHYPR)

HSP 1 Score: 74.3 bits (181), Expect = 1.430e-12
Identity = 42/127 (33.07%), Postives = 60/127 (47.24%), Query Frame = 1
Query:   34 CPLCHDPIAPVTCGFYACAWTYDGAKE-GGELVRGAWRTAGGDKYERFRESDNIA--TWSRLVLVAKP---AIRVKLEPGAAVADAVDSKEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALC 396
            CP+C   + P TCGFY CAW ++G ++  G  +   W+ A G+KY  F+   N     W  L++VAKP   ++ +KL P A          A  D+C +C   FG             CGH +H  C
Sbjct:  250 CPMCFTNVKPRTCGFYNCAWKFEGVQQQDGFTIISQWKDAYGEKYHLFKAGKNYGYVEWESLLIVAKPREGSMAIKLSPAA--------PPARNDKCTICWSDFGSTASGYIVTLG--CGHSFHRAC 366          
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A3M6V6M3_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V6M3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.950e-12
Identity = 43/145 (29.66%), Postives = 62/145 (42.76%), Query Frame = 1
Query:   34 CPLCHDPIAPVTCGFYACAWTYDGAKEGGEL-VRGAWRTAGGDKYERFR--ESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDSKEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRE-CSHASCS-KCPTSR 453
            CP+CH  + P+TCGFY CAW ++G      L +   W  A GD Y RF   E +    W+ L+++ KP   +     A +   V +   ++D C +C                  CGH +H  C   W + C H      CP  R
Sbjct:  227 CPICHCEVRPITCGFYGCAWRFEGVTGSENLSICSQWNDASGDMYHRFDPDEVNGSVEWASLLILTKPRQEMI---AAQLCLTVPTTFKSSDTCTICWSPLSSPTKCFTP----HCGHTFHRECSKEWAKWCKHRKTQPSCPICR 364          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835YW29_9STRA4.220e-103100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835ZEG5_9STRA5.500e-7877.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZBQ4_9STRA1.350e-7170.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C8N2_9STRA5.600e-3347.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A329REX1_9STRA1.540e-1535.14Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A6A3IE52_9STRA2.520e-1432.65Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A833WHP8_PHYIN2.530e-1435.34Ring finger domain n=1 Tax=Phytophthora infestans ... [more]
W2Q0Y3_PHYPN6.080e-1333.07Uncharacterized protein n=7 Tax=Phytophthora paras... [more]
A0A080ZZG9_PHYPR1.430e-1233.07Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A3M6V6M3_9STRA4.950e-1229.66Uncharacterized protein n=2 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_37contigContig_37:962925..963389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165313|e_gw1.37.115.1
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121
KEGG ModuleM00177,M00179
KEGG Pathwayko03010,map03010
KEGG koko:K02983
DescriptionUbiquitin homologues
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1552@1|root,KOG0003@2759|Eukaryota,3QJ68@4776|Peronosporales
Evalue6.35e-16
Seed ortholog67593.Physo140223
Hectar predicted targeting categoryother localisation
TranscriptId165635
TrackFilteredModels1
ProteinId165313
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165313gene_7900Tribonema minus UTEX_B_3156 geneContig_37 962925..963389 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7900_1exon_7900_1Tribonema minus UTEX_B_3156 exonContig_37 962925..963389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7900CDS_7900Tribonema minus UTEX_B_3156 CDSContig_37 962925..963389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165313Trimin1|165313|e_gw1.37.115.1Tribonema minus UTEX_B_3156 polypeptideContig_37 962925..963389 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7900 ID=mRNA_7900|Name=jgi.p|Trimin1|165313|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_37:962925..963389- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGTTCCCGCTCGGCGCGCGCTGCTGGTGCCCCCTGTGCCACGA
CCCCATCGCGCCCGTCACGTGCGGGTTCTACGCGTGCGCGTGGACGTACG
ACGGCGCCAAGGAGGGCGGAGAGCTCGTGCGCGGCGCCTGGCGCACGGCC
GGCGGCGACAAGTACGAGCGCTTCCGCGAGAGCGACAACATAGCCACATG
GTCGCGCCTCGTGCTGGTGGCCAAGCCCGCTATCAGGGTCAAGTTGGAGC
CAGGCGCTGCGGTCGCTGATGCCGTCGACAGTAAGGAGGCGGCTGCGGAC
GAGTGCGCGGTGTGCCTCAGGGGCTTCGGCGGTGGCGGCGGCGGCAGGAG
AGCCACGACGACGACGCGGTGTGGCCACCGCTACCACGCGCTGTGCCTGG
CGAGCTGGCGCGAGTGCAGCCACGCGAGCTGCAGCAAGTGCCCCACGAGC
CGCGCCGCCCTCTGA
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protein sequence of jgi.p|Trimin1|165313

>Trimin1|165313|e_gw1.37.115.1 ID=Trimin1|165313|e_gw1.37.115.1|Name=jgi.p|Trimin1|165313|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=155bp
MAAFPLGARCWCPLCHDPIAPVTCGFYACAWTYDGAKEGGELVRGAWRTA
GGDKYERFRESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDSKEAAAD
ECAVCLRGFGGGGGGRRATTTTRCGHRYHALCLASWRECSHASCSKCPTS
RAAL*
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mRNA from alignment at Contig_37:962925..963389-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7900 ID=mRNA_7900|Name=jgi.p|Trimin1|165313|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_37:962925..963389- (Tribonema minus UTEX_B_3156 )
ATGGCGGCGTTCCCGCTCGGCGCGCGCTGCTGGTGCCCCCTGTGCCACGA CCCCATCGCGCCCGTCACGTGCGGGTTCTACGCGTGCGCGTGGACGTACG ACGGCGCCAAGGAGGGCGGAGAGCTCGTGCGCGGCGCCTGGCGCACGGCC GGCGGCGACAAGTACGAGCGCTTCCGCGAGAGCGACAACATAGCCACATG GTCGCGCCTCGTGCTGGTGGCCAAGCCCGCTATCAGGGTCAAGTTGGAGC CAGGCGCTGCGGTCGCTGATGCCGTCGACAGTAAGGAGGCGGCTGCGGAC GAGTGCGCGGTGTGCCTCAGGGGCTTCGGCGGTGGCGGCGGCGGCAGGAG AGCCACGACGACGACGCGGTGTGGCCACCGCTACCACGCGCTGTGCCTGG CGAGCTGGCGCGAGTGCAGCCACGCGAGCTGCAGCAAGTGCCCCACGAGC CGCGCCGCCCTCTGA
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Coding sequence (CDS) from alignment at Contig_37:962925..963389-

>mRNA_7900 ID=mRNA_7900|Name=jgi.p|Trimin1|165313|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=465bp|location=Sequence derived from alignment at Contig_37:962925..963389- (Tribonema minus UTEX_B_3156 )
ATGGCGGCGTTCCCGCTCGGCGCGCGCTGCTGGTGCCCCCTGTGCCACGA
CCCCATCGCGCCCGTCACGTGCGGGTTCTACGCGTGCGCGTGGACGTACG
ACGGCGCCAAGGAGGGCGGAGAGCTCGTGCGCGGCGCCTGGCGCACGGCC
GGCGGCGACAAGTACGAGCGCTTCCGCGAGAGCGACAACATAGCCACATG
GTCGCGCCTCGTGCTGGTGGCCAAGCCCGCTATCAGGGTCAAGTTGGAGC
CAGGCGCTGCGGTCGCTGATGCCGTCGACAGTAAGGAGGCGGCTGCGGAC
GAGTGCGCGGTGTGCCTCAGGGGCTTCGGCGGTGGCGGCGGCGGCAGGAG
AGCCACGACGACGACGCGGTGTGGCCACCGCTACCACGCGCTGTGCCTGG
CGAGCTGGCGCGAGTGCAGCCACGCGAGCTGCAGCAAGTGCCCCACGAGC
CGCGCCGCCCTCTGA
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