mRNA_7900 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A835YW29_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW29_9STRA) HSP 1 Score: 300 bits (769), Expect = 4.220e-103 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1
Query: 1 MAAFPLGARCWCPLCHDPIAPVTCGFYACAWTYDGAKEGGELVRGAWRTAGGDKYERFRESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDSKEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRECSHASCSKCPTSRAAL 462
MAAFPLGARCWCPLCHDPIAPVTCGFYACAWTYDGAKEGGELVRGAWRTAGGDKYERFRESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDSKEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRECSHASCSKCPTSRAAL
Sbjct: 1 MAAFPLGARCWCPLCHDPIAPVTCGFYACAWTYDGAKEGGELVRGAWRTAGGDKYERFRESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDSKEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRECSHASCSKCPTSRAAL 154
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A835ZEG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEG5_9STRA) HSP 1 Score: 247 bits (630), Expect = 5.500e-78 Identity = 123/158 (77.85%), Postives = 130/158 (82.28%), Query Frame = 1
Query: 1 MAAFPLGARCWCPLCHDPIAPVTCGFYACAWTYDGAKEGGELVRGAWRTAGGDKYERFRESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDSKEAAA----DECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRECSHASCSKCPTSRAAL 462
MAAFPLG+RC CP+C I PVTCGF ACAWTYDGAKE GELVRGAWRTAG DKYERFRESDN+ATWSRLVLVAKPA++VK +PGAAVADAVD+KEAA DECAV LRGFG TRCGHRYHALCLA WRECSHASCSKCPT RAAL
Sbjct: 291 MAAFPLGSRCTCPMCGSAITPVTCGFNACAWTYDGAKEDGELVRGAWRTAGDDKYERFRESDNMATWSRLVLVAKPAVKVKSDPGAAVADAVDNKEAAGASEPDECAVGLRGFGGRSGAVTT---TRCGHRYHALCLAGWRECSHASCSKCPTCRAAL 445
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A835ZBQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ4_9STRA) HSP 1 Score: 229 bits (584), Expect = 1.350e-71 Identity = 112/158 (70.89%), Postives = 125/158 (79.11%), Query Frame = 1
Query: 1 MAAFPLGARCWCPLCHDPIAPVTCGFYACAWTYDGAKEGGELVRGAWRTAGGDKYERFRESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDSKEAAA----DECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRECSHASCSKCPTSRAAL 462
MAAFPLG+ C CP+C+ I PVTCGFYACAWTYDGAKEGGELVRGAWRTAG DKY+RFRESDN+ TWSRLVLVAKPA++VK +P A A++ + +AA DECAVCLRGFG T CG+RYHALCLASWRECSHASCSKCPT RA L
Sbjct: 244 MAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAKEGGELVRGAWRTAGDDKYDRFRESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGRLQPDECAVCLRGFGSGDGSSKATS-TPCGYRYHALCLASWRECSHASCSKCPTCRAVL 400
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A836C8N2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N2_9STRA) HSP 1 Score: 127 bits (320), Expect = 5.600e-33 Identity = 71/151 (47.02%), Postives = 84/151 (55.63%), Query Frame = 1
Query: 1 MAAFPLGARCWCPLCHDPIAPVTCGFYACAWTYDGAKEGGELVRGAWRTAGGDKYERFRESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDS-KEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRECS-HASCSKCPT 447
M AF LG++C CP C + PVTCGFYAC W Y+GAK G L+R W TA D Y R E N+A+WSRLVLVAKP +DA D K+A ECAVCL CGHRY+A CL W+E S A+C+ C T
Sbjct: 173 MNAFTLGSQCACPECGADVTPVTCGFYACTWMYEGAKTDGMLMRSPWHTASDDLYHRVNEHGNMASWSRLVLVAKPI----------ASDAQDKDKDALPSECAVCLMPLAAAEHTVTRA----CGHRYYATCLQRWQESSIGATCTACRT 309
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A329REX1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329REX1_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.540e-15 Identity = 52/148 (35.14%), Postives = 68/148 (45.95%), Query Frame = 1
Query: 34 CPLCHDPIAPVTCGFYACAWTYDGAKE-GGELVRGAWRTAGGDKYERFRESDNI--ATWSRLVLVAKPA---IRVKLEPGAAVADAVDSKEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRE-CSHA-SCSKCPTSR 453
CP+C + P TCGFY CAW ++G +E G + W+ A G KY RF N A W L++VAKP VKL P A A + D+C +C FG CGH +H C+ W C+ + S CP R
Sbjct: 252 CPMCFAKVKPRTCGFYECAWKFEGVQERDGYTIISQWKDACGHKYHRFNAGKNYGSAEWESLLIVAKPREGPTAVKLSPTAQSAGLNKT-----DKCTICWSEFGSTASVFIVTVG--CGHSFHCACIDKWSGWCAKSDSLPSCPVCR 392
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A6A3IE52_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3IE52_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 2.520e-14 Identity = 48/147 (32.65%), Postives = 70/147 (47.62%), Query Frame = 1
Query: 34 CPLCHDPIAPVTCGFYACAWTYDGAK-EGGELVRGAWRTAGGDKYERFR--ESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDSKEAAAD-ECAVC----LRGFGXXXXXXXXXXXTRCGHRYHALCLASWRECSHA--SCSKCP 444
CP C + PVTCGFY CAW ++G K GG W+ G+KY+RF E+ W L+++ KP +K A + ++ +D CAVC L G G + CGH +H C+ +W + S + +KCP
Sbjct: 249 CPKCRSKVKPVTCGFYDCAWKFEGVKARGGFFTSSPWQIVSGEKYQRFDADETSGSIEWESLLILVKP---LKEAVAAELVESAQEARLHSDLVCAVCWTEILSGSGAG---------SECGHLFHCGCIENWSKWSEGQKTLTKCP 383
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A833WHP8_PHYIN (Ring finger domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WHP8_PHYIN) HSP 1 Score: 79.0 bits (193), Expect = 2.530e-14 Identity = 47/133 (35.34%), Postives = 64/133 (48.12%), Query Frame = 1
Query: 34 CPLCHDPIAPVTCGFYACAWTYDGAKEGGEL-VRGAWRTAGGDKYERFRESDNIAT--WSRLVLVAKP---AIRVKLEPGAAVADAVDSKEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRE 414
CP+C P P+TCGFY CAW +DG + + + WR A G+KY RF AT W L++VAK AI V++ PG + + V C++C FG CGH +H C+ W E
Sbjct: 247 CPICKKPFPPITCGFYNCAWKFDGKRSRDDFSISSTWRNARGEKYYRFDTDQAEATVKWDSLLIVAKSKRDAIAVQM-PGFSRSAVVRKSNV----CSICWAPFGLRRDQCLRTGD--CGHTFHRGCIRVWSE 372
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: W2Q0Y3_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2Q0Y3_PHYPN) HSP 1 Score: 75.1 bits (183), Expect = 6.080e-13 Identity = 42/127 (33.07%), Postives = 61/127 (48.03%), Query Frame = 1
Query: 34 CPLCHDPIAPVTCGFYACAWTYDGAKE-GGELVRGAWRTAGGDKYERFRESDNIAT--WSRLVLVAKP---AIRVKLEPGAAVADAVDSKEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALC 396
CP+C + P TCGFY CAW ++G ++ G + W+ A G+KY F+ N + W L++VAKP ++ +KL P A A D+C +C FG CGH +H C
Sbjct: 250 CPMCFTNVKPRTCGFYNCAWKFEGVQQQDGFTIISQWKDAYGEKYHLFKAGKNYGSVEWESLLIVAKPREGSMAIKLSPAA--------PPARNDKCTICWSDFGSTASGYIVTFG--CGHSFHRAC 366
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A080ZZG9_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A080ZZG9_PHYPR) HSP 1 Score: 74.3 bits (181), Expect = 1.430e-12 Identity = 42/127 (33.07%), Postives = 60/127 (47.24%), Query Frame = 1
Query: 34 CPLCHDPIAPVTCGFYACAWTYDGAKE-GGELVRGAWRTAGGDKYERFRESDNIA--TWSRLVLVAKP---AIRVKLEPGAAVADAVDSKEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALC 396
CP+C + P TCGFY CAW ++G ++ G + W+ A G+KY F+ N W L++VAKP ++ +KL P A A D+C +C FG CGH +H C
Sbjct: 250 CPMCFTNVKPRTCGFYNCAWKFEGVQQQDGFTIISQWKDAYGEKYHLFKAGKNYGYVEWESLLIVAKPREGSMAIKLSPAA--------PPARNDKCTICWSDFGSTASGYIVTLG--CGHSFHRAC 366
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Match: A0A3M6V6M3_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V6M3_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 4.950e-12 Identity = 43/145 (29.66%), Postives = 62/145 (42.76%), Query Frame = 1
Query: 34 CPLCHDPIAPVTCGFYACAWTYDGAKEGGEL-VRGAWRTAGGDKYERFR--ESDNIATWSRLVLVAKPAIRVKLEPGAAVADAVDSKEAAADECAVCLRGFGXXXXXXXXXXXTRCGHRYHALCLASWRE-CSHASCS-KCPTSR 453
CP+CH + P+TCGFY CAW ++G L + W A GD Y RF E + W+ L+++ KP + A + V + ++D C +C CGH +H C W + C H CP R
Sbjct: 227 CPICHCEVRPITCGFYGCAWRFEGVTGSENLSICSQWNDASGDMYHRFDPDEVNGSVEWASLLILTKPRQEMI---AAQLCLTVPTTFKSSDTCTICWSPLSSPTKCFTP----HCGHTFHRECSKEWAKWCKHRKTQPSCPICR 364 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165313 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7900 ID=mRNA_7900|Name=jgi.p|Trimin1|165313|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_37:962925..963389- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGGCGTTCCCGCTCGGCGCGCGCTGCTGGTGCCCCCTGTGCCACGAback to top protein sequence of jgi.p|Trimin1|165313 >Trimin1|165313|e_gw1.37.115.1 ID=Trimin1|165313|e_gw1.37.115.1|Name=jgi.p|Trimin1|165313|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=155bp MAAFPLGARCWCPLCHDPIAPVTCGFYACAWTYDGAKEGGELVRGAWRTAback to top mRNA from alignment at Contig_37:962925..963389- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7900 ID=mRNA_7900|Name=jgi.p|Trimin1|165313|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_37:962925..963389- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_37:962925..963389- >mRNA_7900 ID=mRNA_7900|Name=jgi.p|Trimin1|165313|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=465bp|location=Sequence derived from alignment at Contig_37:962925..963389- (Tribonema minus UTEX_B_3156 )back to top |