mRNA_18680 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137206
Unique NamemRNA_18680
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|137206 vs. uniprot
Match: A0A835ZCG5_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCG5_9STRA)

HSP 1 Score: 289 bits (740), Expect = 8.060e-99
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1
Query:    1 FEKALYKATDSRTALKRTLHDYMRIMGKLEVGLGVLSCIVMGLVCGIILDVNFVQAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFINDDNKVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASRA 441
            FEKALYKATDSRTALKRTLHDYMRIMGKLEVGLGVLSCIVMGLVCGIILDVNFVQAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFINDDNKVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASRA
Sbjct:    6 FEKALYKATDSRTALKRTLHDYMRIMGKLEVGLGVLSCIVMGLVCGIILDVNFVQAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFINDDNKVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASRA 152          
BLAST of jgi.p|Trimin1|137206 vs. uniprot
Match: A0A835YYX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYX4_9STRA)

HSP 1 Score: 286 bits (732), Expect = 1.410e-90
Identity = 146/147 (99.32%), Postives = 146/147 (99.32%), Query Frame = 1
Query:    1 FEKALYKATDSRTALKRTLHDYMRIMGKLEVGLGVLSCIVMGLVCGIILDVNFVQAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFINDDNKVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASRA 441
            FEKALYKATDSRTALKRTLHDYMRIMGKLEVGLGVLSCIVMGLVCGIILDVNFVQAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFINDD KVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASRA
Sbjct:   67 FEKALYKATDSRTALKRTLHDYMRIMGKLEVGLGVLSCIVMGLVCGIILDVNFVQAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFINDDYKVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASRA 213          
BLAST of jgi.p|Trimin1|137206 vs. uniprot
Match: A0A835YRB7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRB7_9STRA)

HSP 1 Score: 230 bits (586), Expect = 3.480e-75
Identity = 112/147 (76.19%), Postives = 131/147 (89.12%), Query Frame = 1
Query:    1 FEKALYKATDSRTALKRTLHDYMRIMGKLEVGLGVLSCIVMGLVCGIILDVNFVQAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFINDDNKVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASRA 441
            FE+ALYKATDSR+ALK TL  YM+IM KL+ G  VLSCI++ +VC I+L V+FV+A  TWLTL LAF FCFGDTV+RLFEGLVLVFVW+P+G++DRVFINDDN +EMN VV+KINLLNTEFIRSDGQLCI+SNS+IQQRDVRNASRA
Sbjct:    6 FERALYKATDSRSALKSTLQCYMKIMTKLKAGFTVLSCILLAVVCAIVLGVDFVKASPTWLTLVLAFGFCFGDTVRRLFEGLVLVFVWHPFGVADRVFINDDNNMEMNFVVSKINLLNTEFIRSDGQLCILSNSVIQQRDVRNASRA 152          
BLAST of jgi.p|Trimin1|137206 vs. uniprot
Match: A0A836CK56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK56_9STRA)

HSP 1 Score: 158 bits (400), Expect = 6.020e-44
Identity = 77/146 (52.74%), Postives = 103/146 (70.55%), Query Frame = 1
Query:    1 FEKALYKATDSRTALKRTLHDYMRIMGKLEVGLGVLSCIVMGLVCGIILDVNFVQAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFINDDNKVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASR 438
            F KA+ +  DSR ALK TL DY+ I+ KL+  L VL+ +V+ ++C II  V+ +  GTTWLT  LAFSF FGDT +++FEG +LVF+W  Y +SDR+ I DD+    NL VTKI+LL TE +R DG + ++SNS IQ RD+RN SR
Sbjct:  181 FLKAVVRTMDSRIALKATLDDYISIVMKLDAALSVLAALVLLIICCIIAGVDLMTTGTTWLTFILAFSFLFGDTARKMFEGFILVFIWQAYAVSDRILIQDDSNEVQNLTVTKISLLTTELLRGDGMVYVMSNSAIQARDIRNISR 326          
BLAST of jgi.p|Trimin1|137206 vs. uniprot
Match: A0A1Y1YFR3_9FUNG (EF-hand domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YFR3_9FUNG)

HSP 1 Score: 77.4 bits (189), Expect = 4.850e-14
Identity = 45/136 (33.09%), Postives = 77/136 (56.62%), Query Frame = 1
Query:   34 RTALKRTLHDYMRIMGKLEVGLGVLSCIVMGLVCGIILDVNFVQAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFINDDNKVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASRA 441
            R AL   + D  + +GKL+    V + IV+ + C ++ D + V+      ++ LA +F FG T   LF+ ++ VFV +PY   DRVF++ DN     L+V K+ LL+T F+++DGQ+    N ++  + + N  R+
Sbjct:   84 RKALMIGMRDMSQAVGKLDRIFLVFAFIVLFIACCMLFDNSIVKTLIPLGSMFLALTFVFGSTAASLFKSIIFVFVTHPYDAGDRVFLDGDN-----LMVFKVGLLSTIFVKADGQMIYAPNEVMCTKFIHNIRRS 214          
BLAST of jgi.p|Trimin1|137206 vs. uniprot
Match: A0A0L0UY58_9BASI (EF-hand domain-containing protein n=3 Tax=Puccinia striiformis TaxID=27350 RepID=A0A0L0UY58_9BASI)

HSP 1 Score: 73.6 bits (179), Expect = 2.140e-12
Identity = 45/143 (31.47%), Postives = 82/143 (57.34%), Query Frame = 1
Query:   13 LYKATDSRTALKRTLHDYMRIMGKLEVGLGVLSCIVMGLVCGIILDVNFVQAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFINDDNKVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASRA 441
            +++A   R AL  +L D    +G+L+  +  +S IV   +   I+ +++ +A T+  T+ +A +F F +T   +F+ +++VF  +PY   DRV +++D  VE  LVV ++ LL T F+R DG      NS++ Q+ + N  R+
Sbjct:  563 IFRAYKERRALANSLQDVSHAIGRLDRIMMAMSGIVFIFIALSIVGIDYSKALTSVYTVGIAAAFIFKETAGNVFDAIIMVFCTHPYDTGDRVIMDNDG-VEEVLVVKRMGLLVTVFLRWDGTEWFAPNSLLGQKFIINLRRS 704          
BLAST of jgi.p|Trimin1|137206 vs. uniprot
Match: A0A8H7PGE9_9FUNG (EF-hand domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PGE9_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 5.390e-12
Identity = 43/136 (31.62%), Postives = 73/136 (53.68%), Query Frame = 1
Query:   34 RTALKRTLHDYMRIMGKLEVGLGVLSCIVMGLVCGIILDVNFVQAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFINDDNKVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASRA 441
            R  L  ++ D  +  GKL+V L  ++ I+  ++      +N   +     T+ +A SF FG++ K +FE ++ +FV +PY I DRVFI  +N       V  + LL T F++ DG +  + NSI+  + + N SR+
Sbjct:  575 RKLLSASMRDLSQASGKLDVILLTIAAIIWAVIVCSCFGINVGTSLMPLWTMFVAVSFIFGNSAKDMFESIIFIFVTHPYDIGDRVFIGTEN-----WQVKSMGLLITTFLKWDGTIVYVKNSILAPQYIFNVSRS 705          
BLAST of jgi.p|Trimin1|137206 vs. uniprot
Match: A0A8H7U854_MORIS (EF-hand domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7U854_MORIS)

HSP 1 Score: 71.6 bits (174), Expect = 1.000e-11
Identity = 42/136 (30.88%), Postives = 72/136 (52.94%), Query Frame = 1
Query:   34 RTALKRTLHDYMRIMGKLEVGLGVLSCIVMGLVCGIILDVNFVQAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFINDDNKVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASRA 441
            R  L  ++ D  +  GKL++ L  ++ ++  ++      +N   +     T+ +A SF FG++ K +FE ++ +FV +PY I DRVFI  +N       V  + LL T F++ DG +  + NSI+    + N SRA
Sbjct:  591 RKLLSASMRDLSQASGKLDMILLTIAVVIWAVIVCACFGINVGTSLMPLWTMFVAVSFIFGNSAKDMFESIIFIFVLHPYDIGDRVFIGTEN-----WQVKSMGLLMTTFLKWDGTIVYVKNSILAPLYILNVSRA 721          
BLAST of jgi.p|Trimin1|137206 vs. uniprot
Match: A0A180H387_PUCT1 (EF-hand domain-containing protein n=1 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A180H387_PUCT1)

HSP 1 Score: 71.2 bits (173), Expect = 1.360e-11
Identity = 43/143 (30.07%), Postives = 82/143 (57.34%), Query Frame = 1
Query:   13 LYKATDSRTALKRTLHDYMRIMGKLEVGLGVLSCIVMGLVCGIILDVNFVQAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFINDDNKVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASRA 441
            +++A   R AL  +L D    +G+L+  +  ++ IV   +   I+ +++ +A T+  T+ +A +F F +T   +F+ +++VF  +PY   DRV +++D   E+ LVV ++ LL T F+R DG      NS++ Q+ + N  R+
Sbjct:  537 IFRAYKERRALANSLQDVGHAIGRLDRIMMAMAGIVFVFIALSIVGIDYSKALTSVYTVGIAAAFIFKETAGNVFDAIIMVFCTHPYDTGDRVIMDNDGVDEV-LVVKRMGLLVTVFLRWDGTEWFAPNSLLGQKFIINLRRS 678          
BLAST of jgi.p|Trimin1|137206 vs. uniprot
Match: A0A0L6UUQ9_9BASI (EF-hand domain-containing protein n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6UUQ9_9BASI)

HSP 1 Score: 70.9 bits (172), Expect = 1.880e-11
Identity = 43/143 (30.07%), Postives = 82/143 (57.34%), Query Frame = 1
Query:   13 LYKATDSRTALKRTLHDYMRIMGKLEVGLGVLSCIVMGLVCGIILDVNFVQAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFINDDNKVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASRA 441
            +++A   R AL  +L D    +G+L+  +  ++ IV   +   ++ +++ +A T+  T+ +A +F F +T   +F+ +++VF  +PY   DRV +++D  VE  LVV ++ LL T F+R DG      NS++ Q+ + N  R+
Sbjct:  628 IFRAYKERRALANSLKDVGHAIGRLDRIMMAMAGIVFIFIALSVVGIDYSKALTSVYTVGIAAAFIFKETAGNVFDAIIMVFCTHPYDTGDRVIMDNDG-VEEVLVVKRMGLLVTVFLRWDGTEWFAPNSLLGQKFIINLRRS 769          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137206 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCG5_9STRA8.060e-99100.00Uncharacterized protein (Fragment) n=2 Tax=Tribone... [more]
A0A835YYX4_9STRA1.410e-9099.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YRB7_9STRA3.480e-7576.19Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CK56_9STRA6.020e-4452.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Y1YFR3_9FUNG4.850e-1433.09EF-hand domain-containing protein n=1 Tax=Basidiob... [more]
A0A0L0UY58_9BASI2.140e-1231.47EF-hand domain-containing protein n=3 Tax=Puccinia... [more]
A0A8H7PGE9_9FUNG5.390e-1231.62EF-hand domain-containing protein n=1 Tax=Umbelops... [more]
A0A8H7U854_MORIS1.000e-1130.88EF-hand domain-containing protein n=1 Tax=Mortiere... [more]
A0A180H387_PUCT11.360e-1130.07EF-hand domain-containing protein n=1 Tax=Puccinia... [more]
A0A0L6UUQ9_9BASI1.880e-1130.07EF-hand domain-containing protein n=1 Tax=Puccinia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_362contigContig_362:3971..4411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137206|gw1.362.6.1
KEGG TC1.A.23.4
BRITEko00000,ko02000
KEGG koko:K22048
GOsGO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006884,GO:0008150,GO:0008324,GO:0008361,GO:0008381,GO:0009987,GO:0012505,GO:0015075,GO:0015085,GO:0015267,GO:0015275,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0031224,GO:0032535,GO:0034220,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046873,GO:0048471,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071840,GO:0072503,GO:0072507,GO:0072511,GO:0090066,GO:0097038,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0140135
Descriptionmechanosensitive ion channel activity
COG categoryM
Max annot lvl33154|Opisthokonta
EggNOG OGsCOG0668@1|root,KOG4629@2759|Eukaryota,38H8F@33154|Opisthokonta
Evalue5.38e-16
Seed ortholog192875.XP_004363719.1
Hectar predicted targeting categorysignal anchor
TranscriptId137528
TrackFilteredModels1
ProteinId137206
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137206gene_18680Tribonema minus UTEX_B_3156 geneContig_362 3971..4411 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18680_1exon_18680_1Tribonema minus UTEX_B_3156 exonContig_362 3971..4411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18680CDS_18680Tribonema minus UTEX_B_3156 CDSContig_362 3971..4411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137206Trimin1|137206|gw1.362.6.1Tribonema minus UTEX_B_3156 polypeptideContig_362 3971..4411 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18680 ID=mRNA_18680|Name=jgi.p|Trimin1|137206|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_362:3971..4411+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCGAGAAGGCATTGTATAAGGCTACTGACAGCCGCACTGCTTTGAAACG
AACACTGCACGACTACATGAGGATCATGGGCAAGCTCGAGGTGGGTCTTG
GAGTGCTTTCATGCATTGTCATGGGACTTGTATGTGGCATCATTCTCGAT
GTAAACTTTGTGCAGGCAGGCACGACATGGCTCACACTGGCACTCGCCTT
TTCCTTCTGCTTTGGTGACACAGTGAAGCGCTTGTTCGAAGGCCTCGTGC
TTGTCTTTGTCTGGAATCCTTATGGAATTTCAGACAGGGTCTTCATCAAT
GATGACAACAAGGTGGAAATGAACCTTGTTGTTACCAAGATCAACTTACT
GAACACGGAGTTTATTCGAAGTGACGGGCAATTGTGCATAATCTCCAACA
GCATCATTCAACAGCGAGATGTGCGAAATGCAAGCAGGGCA
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protein sequence of jgi.p|Trimin1|137206

>Trimin1|137206|gw1.362.6.1 ID=Trimin1|137206|gw1.362.6.1|Name=jgi.p|Trimin1|137206|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=147bp
FEKALYKATDSRTALKRTLHDYMRIMGKLEVGLGVLSCIVMGLVCGIILD
VNFVQAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFIN
DDNKVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASRA
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mRNA from alignment at Contig_362:3971..4411+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18680 ID=mRNA_18680|Name=jgi.p|Trimin1|137206|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_362:3971..4411+ (Tribonema minus UTEX_B_3156 )
TTCGAGAAGGCATTGTATAAGGCTACTGACAGCCGCACTGCTTTGAAACG AACACTGCACGACTACATGAGGATCATGGGCAAGCTCGAGGTGGGTCTTG GAGTGCTTTCATGCATTGTCATGGGACTTGTATGTGGCATCATTCTCGAT GTAAACTTTGTGCAGGCAGGCACGACATGGCTCACACTGGCACTCGCCTT TTCCTTCTGCTTTGGTGACACAGTGAAGCGCTTGTTCGAAGGCCTCGTGC TTGTCTTTGTCTGGAATCCTTATGGAATTTCAGACAGGGTCTTCATCAAT GATGACAACAAGGTGGAAATGAACCTTGTTGTTACCAAGATCAACTTACT GAACACGGAGTTTATTCGAAGTGACGGGCAATTGTGCATAATCTCCAACA GCATCATTCAACAGCGAGATGTGCGAAATGCAAGCAGGGCA
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Coding sequence (CDS) from alignment at Contig_362:3971..4411+

>mRNA_18680 ID=mRNA_18680|Name=jgi.p|Trimin1|137206|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=441bp|location=Sequence derived from alignment at Contig_362:3971..4411+ (Tribonema minus UTEX_B_3156 )
TTCGAGAAGGCATTGTATAAGGCTACTGACAGCCGCACTGCTTTGAAACG
AACACTGCACGACTACATGAGGATCATGGGCAAGCTCGAGGTGGGTCTTG
GAGTGCTTTCATGCATTGTCATGGGACTTGTATGTGGCATCATTCTCGAT
GTAAACTTTGTGCAGGCAGGCACGACATGGCTCACACTGGCACTCGCCTT
TTCCTTCTGCTTTGGTGACACAGTGAAGCGCTTGTTCGAAGGCCTCGTGC
TTGTCTTTGTCTGGAATCCTTATGGAATTTCAGACAGGGTCTTCATCAAT
GATGACAACAAGGTGGAAATGAACCTTGTTGTTACCAAGATCAACTTACT
GAACACGGAGTTTATTCGAAGTGACGGGCAATTGTGCATAATCTCCAACA
GCATCATTCAACAGCGAGATGTGCGAAATGCAAGCAGGGCA
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