mRNA_8442 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A835Z2K1_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K1_9STRA) HSP 1 Score: 380 bits (976), Expect = 5.720e-133 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1
Query: 94 MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALDFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQETTKRAILHQVCHL 660
MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALDFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQETTKRAILHQVCHL
Sbjct: 1 MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALDFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQETTKRAILHQVCHL 189
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A6H5JLZ3_9PHAE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ3_9PHAE) HSP 1 Score: 182 bits (462), Expect = 6.040e-55 Identity = 83/178 (46.63%), Postives = 124/178 (69.66%), Query Frame = 1
Query: 127 LGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALDFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQETTKRAILHQVCHL 660
+ +I+L++ +M SFG G +V+LPG+ P FPFGTPY+E+ D L ++ L+ RN VL LL R+A TKR PERWQ L V ++DVV+CFE+R+FD+ V+DLQ RD FKP+ ++S+ ++D+ D+ A DV LC+MLE C+DL+S+ + ++ F+ +KR +LHQVCH+
Sbjct: 1 MAEILLKEHDMRAQSFGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGGHVASFDVVVCFESRVFDLVVEDLQQRDPDTFKPLHVVSMTIRDSANDSAAAAGDVLDLCKMLEDCDDLDSNAAELLNDFRIRSKRTVLHQVCHI 178
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A6H5KZG9_9PHAE (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG9_9PHAE) HSP 1 Score: 183 bits (464), Expect = 1.250e-52 Identity = 84/202 (41.58%), Postives = 136/202 (67.33%), Query Frame = 1
Query: 55 RDVKAPVSQHRYAMVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALDFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQETTKRAILHQVCHL 660
+ + A S+ R+A+VCS+N NRS++ +L++ N V S+G G +V+LPG+ P VFPFGTPY ++ D L A D+ L+++N +L L+AR+A K P+R+Q++ + +DVV+CFE R+F + V+DLQ RD FKP+ +I++ +KD+ +++ A + V LC ML+ L+ + +G++E F TKR +LHQVCH+
Sbjct: 191 KTMAAARSKRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVEDLQSRDPETFKPLHVINMTIKDSFEESAAAADSVLELCRMLDGVSQLDDETAGVLEVFTRKTKRTVLHQVCHV 392
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A061RLN1_9CHLO (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RLN1_9CHLO) HSP 1 Score: 172 bits (437), Expect = 6.610e-51 Identity = 88/198 (44.44%), Postives = 126/198 (63.64%), Query Frame = 1
Query: 61 VKAPVSQHRYAMVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALDFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQETTKRAILHQVC 654
V++ +S RYAMVC+SN NRS+ +L++ N V S+GVG VKLPG S EP V+ FGTPY +++ L A D +LYTRNG+L++L R+ K PERWQD YDVV+CFE R+FD CV DLQ R+ + + ++++ VKD ++A A LC+ML+A ED E ++ I+ F++ T R L+ +C
Sbjct: 2 VESRLSNLRYAMVCASNQNRSMEAHALLKEHNFRVGSYGVGQHVKLPGASAKEPNVYGFGTPYKRIYEELSAKDPELYTRNGLLKMLHRNMGVKTAPERWQDCRDR----YDVVVCFEERVFDACVDDLQKREQSLCRSVLVVNLEVKDNHEEAANAAPHALRLCQMLDASEDWEEEIDAILNVFEKETGRRPLYTIC 195
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A7S2A5S7_TRICV (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A5S7_TRICV) HSP 1 Score: 171 bits (434), Expect = 8.120e-50 Identity = 94/206 (45.63%), Postives = 128/206 (62.14%), Query Frame = 1
Query: 64 KAPVSQHRYAMVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAA--DKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDAL-DFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQET----TKRAILHQVCHL 660
+ P+S+ + +VCSSN+NRS+ +VL + V S+G GT V+LPGRS EP VF FGTPY EMH L A D+ +T NGVL+L R A KR P+RWQD+PS V +DVVI FE RIFD ++DLQ R+ DF PI ++ + KD P +A+ LC +LE DL ++ I++AFQE T +L+Q+C+L
Sbjct: 41 RRPLSRLSFGVVCSSNINRSMEAHVVLGNAGLRVESYGTGTTVRLPGRSAMEPRVFKFGTPYEEMHASLAATPDDEAFFTHNGVLQLCRRGAAVKRAPQRWQDVPSREVQKHDVVIAFEERIFDAVIEDLQMREPTEDFLPIHVVCLDTKDNPHEAKLQGRVALELCWLLEGANDLVLEMPEILDAFQEERMTHTPIKVLYQLCYL 246
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A6S8R8X9_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8R8X9_9STRA) HSP 1 Score: 169 bits (427), Expect = 1.220e-48 Identity = 91/202 (45.05%), Postives = 129/202 (63.86%), Query Frame = 1
Query: 76 SQHRYAMVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAA--DKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALD-FKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQET----TKRAILHQVCHL 660
S+ + +VCSSN+NRS+ G +VL + V S+G GT V+LPG+S EP VF FGTPY EM++ L A D+ +T NGVL+L R A K P+RWQD+ S + +DVVI FE RI+D V+DLQ R+ + F+PI +I + KD P +A+ LC +LEA +DL + GIVE+FQ+ T+ +L+Q+C+L
Sbjct: 55 SKLSFGVVCSSNINRSMEGHVVLGNAGLRVESYGTGTSVRLPGKSALEPRVFKFGTPYEEMYNSLAATPEDEAFFTHNGVLQLCRRGAAVKTAPQRWQDMSSDFIATHDVVIAFEERIYDAVVEDLQTREPTESFEPIHVICLDTKDNPHEAKLQGRVALELCWLLEAADDLVVEAPGIVESFQDERMTHTQIKVLYQLCYL 256
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A836C7Y0_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Y0_9STRA) HSP 1 Score: 165 bits (418), Expect = 5.690e-48 Identity = 75/125 (60.00%), Postives = 99/125 (79.20%), Query Frame = 1
Query: 286 QLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALDFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQETTKRAILHQVCHL 660
QL+ R +L+LL+RDACTKRHPERWQDL SA +D++ICF ++IFD+C++D Q+R DFKPI ++S+PV DTPQ AE+AM DV L +ML+AC+DL++ + +VEAFQ TTK ILHQVCHL
Sbjct: 78 QLHARAALLKLLSRDACTKRHPERWQDLGSADTAKFDIIICFNDKIFDLCIEDFQNRPPFDFKPIHIVSLPVMDTPQHAEQAMVDVLKLVKMLDACDDLDNHGADVVEAFQATTKWPILHQVCHL 202
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A7S2Y8T2_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=4 Tax=Naviculales TaxID=38748 RepID=A0A7S2Y8T2_9STRA) HSP 1 Score: 164 bits (416), Expect = 2.400e-47 Identity = 89/204 (43.63%), Postives = 123/204 (60.29%), Query Frame = 1
Query: 70 PVSQHRYAMVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAA--DKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDAL-DFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQET----TKRAILHQVCHL 660
P S+ + +VCSSN+NRS+ +VL + V S+G GT V+LPGR+ EP +F FGTPY EMH + D +TRNGVL+L R A KR P+RWQD+ S + +++VI FE RIFD ++DLQ R DF+P+ +I + KD P +A LC LE CEDL+ + + I++ FQ T IL+QVC+L
Sbjct: 24 PKSKLSFGVVCSSNINRSMEAHVVLGNAGLRVESYGTGTQVRLPGRTAMEPRIFKFGTPYEEMHQSMNVTPEDTTYFTRNGVLQLCQRGAAVKRAPQRWQDMASEDISKHNIVIAFEERIFDAVIEDLQLRQPTEDFRPMHVICLDTKDNPHEAARQGIVALRLCWRLEHCEDLDLEAAEIIDEFQRERDSETNIKILYQVCYL 227
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A7S1FXY9_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FXY9_9STRA) HSP 1 Score: 164 bits (416), Expect = 3.810e-47 Identity = 88/200 (44.00%), Postives = 124/200 (62.00%), Query Frame = 1
Query: 76 SQHRYAMVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALD-FKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQET----TKRAILHQVCHL 660
S+ + +VCSSN+NRS+ G +VL + V S+G G+ V+LPGRS +P +F FGTPY +M++ L D+ + +NGVL+L R + K P+RWQD PS A+ ++DVVI FE RIFD V+DLQ RD D F PI +I + KD P +A LC +LE DL ++ IVE FQ T+ +L+Q+C+L
Sbjct: 44 SKLSFGVVCSSNINRSMEGHVVLGNAGLKVESYGTGSTVRLPGRSAMDPRIFKFGTPYAQMYESLATEDEAFFFQNGVLQLCRRGSGVKVAPQRWQDTPSTAIASHDVVIAFEERIFDAVVEDLQTRDPTDDFAPIHVICLDTKDNPHEAHIQGRVCLELCWLLENAGDLVAEAPEIVENFQMVHMSHTQIKVLYQLCYL 243
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Match: A0A7S1GS15_CYCTE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GS15_CYCTE) HSP 1 Score: 164 bits (414), Expect = 7.190e-47 Identity = 95/209 (45.45%), Postives = 125/209 (59.81%), Query Frame = 1
Query: 58 DVKAPVSQHRYAMVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAA--DKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDAL-DFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLE-ACEDLESDVSGIVEAFQET----TKRAILHQVCHL 660
D +S + +VCSSN+NRS+ +VL + V S+G GT V+LPGRS EP +F FGTPY EM+ L A D + RNGVL+L R A K P+RWQD P AV +DVVI FE RIFD ++DLQ R+ DFKPI +I + KD P +A+ LC MLE A +DL + IV+AFQ+ T +L+Q+C+L
Sbjct: 33 DSVKKLSTLSFGVVCSSNINRSMEAHVVLGNAGLKVESYGTGTQVRLPGRSAMEPRIFKFGTPYEEMYKSLAATQDDAAFFMRNGVLQLCRRGAAVKVAPQRWQDTPPEAVTKHDVVIAFEERIFDAVIEDLQTREPTEDFKPIHVICLDTKDNPHEAQLQGRVALELCWMLESASDDLINQAPTIVDAFQKERMTHTPIQVLYQLCYL 241 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349122 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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BLAST of jgi.p|Trimin1|349122 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8442 ID=mRNA_8442|Name=jgi.p|Trimin1|349122|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=663bp|location=Sequence derived from alignment at Contig_36:1032418..1039708- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTTGGCGAGTGGCGCTCCGATGCTGAGCGCATTGCACGAGGAGACAAGACback to top protein sequence of jgi.p|Trimin1|349122 >Trimin1|349122|estExt_Genemark1.C_Ctg_360119 ID=Trimin1|349122|estExt_Genemark1.C_Ctg_360119|Name=jgi.p|Trimin1|349122|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=190bp MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTback to top mRNA from alignment at Contig_36:1032418..1039708- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8442 ID=mRNA_8442|Name=jgi.p|Trimin1|349122|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7291bp|location=Sequence derived from alignment at Contig_36:1032418..1039708- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_36:1032418..1039708- >mRNA_8442 ID=mRNA_8442|Name=jgi.p|Trimin1|349122|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=570bp|location=Sequence derived from alignment at Contig_36:1032418..1039708- (Tribonema minus UTEX_B_3156 )back to top |