Trimin1|349102|estExt_Genemark1.C_Ctg_360040 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|349102
Unique Name	Trimin1\|349102\|estExt_Genemark1.C_Ctg_360040
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	246

Homology

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BLAST of jgi.p|Trimin1|349102 vs. uniprot
Match: A0A835Z3Y4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Y4_9STRA)

HSP 1 Score: 488 bits (1256), Expect = 2.430e-174
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0

Query:    1 MGAAASLTEEQQLVVYNKMKTYLESKDVDDMPDAQRQLYEELRLKYKHFASDVKRVPKSSKVSVPLADIQRVRPWHFVEPGDAVECRPDGQAMWFAGSVTACNEDNDTYTVLMDGDESPETLKGDQIRKEDESNETWMVVQFPKWERPLQQGHKAWAWEGGGDAKAVLAYLNMAGDCELFESLLFLSSDSRGGGGRRGPTGSGGGSSNALTPESRAFDMASRIINNALARLPASILPSTLPEETQ 245
            MGAAASLTEEQQLVVYNKMKTYLESKDVDDMPDAQRQLYEELRLKYKHFASDVKRVPKSSKVSVPLADIQRVRPWHFVEPGDAVECRPDGQAMWFAGSVTACNEDNDTYTVLMDGDESPETLKGDQIRKEDESNETWMVVQFPKWERPLQQGHKAWAWEGGGDAKAVLAYLNMAGDCELFESLLFLSSDSRGGGGRRGPTGSGGGSSNALTPESRAFDMASRIINNALARLPASILPSTLPEETQ
Sbjct:    1 MGAAASLTEEQQLVVYNKMKTYLESKDVDDMPDAQRQLYEELRLKYKHFASDVKRVPKSSKVSVPLADIQRVRPWHFVEPGDAVECRPDGQAMWFAGSVTACNEDNDTYTVLMDGDESPETLKGDQIRKEDESNETWMVVQFPKWERPLQQGHKAWAWEGGGDAKAVLAYLNMAGDCELFESLLFLSSDSRGGGGRRGPTGSGGGSSNALTPESRAFDMASRIINNALARLPASILPSTLPEETQ 245

[Close]

BLAST of jgi.p|Trimin1|349102 vs. uniprot
Match: A0A835YUC8_9STRA (PB1 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUC8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.450e-13
Identity = 55/105 (52.38%), Postives = 60/105 (57.14%), Query Frame = 0

Query:  161 GGDAKAVLAYLNMAGDCELFESLLFLSSDSR----------------GGGGRRGPTGSGGGS---------SNALTPESRAFDMASRIINNALARLPASILPSTL 240
            GGDAKAVLA+LNMAGDCELF SLLF  SDSR                    RRG  G              S+ALTPESRAF+MA RIIN+A ARLP S+   TL
Sbjct: 1029 GGDAKAVLAFLNMAGDCELFVSLLFYRSDSRWVDHAEMQHSLALLRIASAARRGCRGXXXXXXXXXXXXXXSDALTPESRAFNMAGRIINDAFARLPVSMYDPTL 1133

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349102 vs. uniprot

BLAST of jgi.p|Trimin1|349102 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835Z3Y4_9STRA	2.430e-174	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YUC8_9STRA	4.450e-13	52.38	PB1 domain-containing protein (Fragment) n=1 Tax=T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.140		coord: 73..134 e-value: 2.3E-9 score: 38.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..212

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_36	contig	Contig_36:435096..448243 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349102	mRNA_8376	Tribonema minus UTEX_B_3156	mRNA	Contig_36 434982..448243 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|349102|estExt_Genemark1.C_Ctg_360040 ID=Trimin1|349102|estExt_Genemark1.C_Ctg_360040|Name=jgi.p|Trimin1|349102|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=246bp
MGAAASLTEEQQLVVYNKMKTYLESKDVDDMPDAQRQLYEELRLKYKHFA
SDVKRVPKSSKVSVPLADIQRVRPWHFVEPGDAVECRPDGQAMWFAGSVT
ACNEDNDTYTVLMDGDESPETLKGDQIRKEDESNETWMVVQFPKWERPLQ
QGHKAWAWEGGGDAKAVLAYLNMAGDCELFESLLFLSSDSRGGGGRRGPT
GSGGGSSNALTPESRAFDMASRIINNALARLPASILPSTLPEETQ*