mRNA_8396 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165236
Unique NamemRNA_8396
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|165236 vs. uniprot
Match: A0A835YXF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXF2_9STRA)

HSP 1 Score: 531 bits (1368), Expect = 1.120e-190
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 1 
Query:    1 MRTFLNHPHGEWLVSSESAANVVLRIMATLNLPPATTHVLIPGVGKSKLPLTLFQCGVVNQVLLDIEEEALQEQRGNFDQQQASGVLIARVDLLGQSLAAAVQAVAAAGGPCTFDLVVDKSFMDVFIRQGGSTKVMKVLSQLTSDGGTFVGFSMFHAKWRRLLGKKVWHAQYAHMPAAQHGSRTRPFVHSFSVPTAVLVATKRRSAAKDTAPKGCKACEVTQLHPLPPCVPVESRAALNLACTVKCMQCISTVAVHDMPFDAAHYGG 801
            MRTFLNHPHGEWLVSSESAANVVLRIMATLNLPPATTHVLIPGVGKSKLPLTLFQCGVVNQVLLDIEEEALQEQRGNFDQQQASGVLIARVDLLGQSLAAAVQAVAAAGGPCTFDLVVDKSFMDVFIRQGGSTKVMKVLSQLTSDGGTFVGFSMFHAKWRRLLGKKVWHAQYAHMPAAQHGSRTRPFVHSFSVPTAVLVATKRRSAAKDTAPKGCKACEVTQLHPLPPCVPVESRAALNLACTVKCMQCISTVAVHDMPFDAAHYGG
Sbjct:    1 MRTFLNHPHGEWLVSSESAANVVLRIMATLNLPPATTHVLIPGVGKSKLPLTLFQCGVVNQVLLDIEEEALQEQRGNFDQQQASGVLIARVDLLGQSLAAAVQAVAAAGGPCTFDLVVDKSFMDVFIRQGGSTKVMKVLSQLTSDGGTFVGFSMFHAKWRRLLGKKVWHAQYAHMPAAQHGSRTRPFVHSFSVPTAVLVATKRRSAAKDTAPKGCKACEVTQLHPLPPCVPVESRAALNLACTVKCMQCISTVAVHDMPFDAAHYGG 267
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165236 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YXF2_9STRA1.120e-190100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_36contigContig_36:684242..685205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165236|e_gw1.36.36.1
Hectar predicted targeting categoryother localisation
TranscriptId165558
TrackFilteredModels1
ProteinId165236
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165236gene_8396Tribonema minus UTEX_B_3156 geneContig_36 684242..685205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165236Trimin1|165236|e_gw1.36.36.1Tribonema minus UTEX_B_3156 polypeptideContig_36 684242..685205 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8396_2exon_8396_2Tribonema minus UTEX_B_3156 exonContig_36 684242..684643 -
exon_8396_1exon_8396_1Tribonema minus UTEX_B_3156 exonContig_36 684804..685205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8396CDS_8396Tribonema minus UTEX_B_3156 CDSContig_36 684804..685205 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8396 ID=mRNA_8396|Name=jgi.p|Trimin1|165236|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=804bp|location=Sequence derived from alignment at Contig_36:684242..685205- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGACCTTCCTGAATCATCCTCATGGGGAGTGGCTGGTCAGCAGCGA
ATCAGCAGCCAACGTGGTGCTACGCATCATGGCGACGTTGAATCTCCCTC
CTGCCACTACCCACGTGCTGATACCGGGTGTTGGTAAGAGCAAGCTTCCT
CTGACGCTATTTCAGTGCGGAGTGGTTAATCAAGTGCTCCTCGACATCGA
GGAGGAAGCGTTGCAGGAGCAGAGGGGGAATTTCGACCAGCAACAGGCAT
CAGGAGTGCTCATTGCTCGTGTTGACCTTCTGGGGCAGTCACTCGCCGCA
GCAGTGCAGGCTGTCGCTGCCGCAGGTGGCCCATGCACGTTCGACCTGGT
CGTTGACAAATCGTTCATGGATGTGTTCATCAGACAGGGCGGCAGCACCA
AGGTGATGAAAGTGCTCTCGCAACTGACGTCCGACGGCGGCACTTTCGTG
GGCTTCTCTATGTTCCATGCCAAGTGGCGTCGCCTGCTTGGCAAGAAAGT
TTGGCATGCGCAGTACGCACACATGCCTGCGGCGCAGCACGGCAGCCGTA
CACGTCCTTTCGTCCACTCCTTCAGCGTTCCAACCGCGGTGCTTGTGGCC
ACAAAAAGGAGATCGGCTGCCAAAGATACGGCGCCCAAGGGTTGTAAGGC
ATGCGAAGTAACCCAACTTCACCCTCTACCTCCCTGCGTTCCAGTAGAGA
GCAGGGCTGCACTGAATCTTGCATGCACAGTGAAGTGCATGCAGTGCATA
AGCACAGTTGCGGTGCATGACATGCCGTTTGATGCTGCGCACTACGGTGG
CTGA
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protein sequence of jgi.p|Trimin1|165236

>Trimin1|165236|e_gw1.36.36.1 ID=Trimin1|165236|e_gw1.36.36.1|Name=jgi.p|Trimin1|165236|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=268bp
MRTFLNHPHGEWLVSSESAANVVLRIMATLNLPPATTHVLIPGVGKSKLP
LTLFQCGVVNQVLLDIEEEALQEQRGNFDQQQASGVLIARVDLLGQSLAA
AVQAVAAAGGPCTFDLVVDKSFMDVFIRQGGSTKVMKVLSQLTSDGGTFV
GFSMFHAKWRRLLGKKVWHAQYAHMPAAQHGSRTRPFVHSFSVPTAVLVA
TKRRSAAKDTAPKGCKACEVTQLHPLPPCVPVESRAALNLACTVKCMQCI
STVAVHDMPFDAAHYGG*
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mRNA from alignment at Contig_36:684242..685205-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8396 ID=mRNA_8396|Name=jgi.p|Trimin1|165236|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=964bp|location=Sequence derived from alignment at Contig_36:684242..685205- (Tribonema minus UTEX_B_3156 )
ATGAGGACCTTCCTGAATCATCCTCATGGGGAGTGGCTGGTCAGCAGCGA
ATCAGCAGCCAACGTGGTGCTACGCATCATGGCGACGTTGAATCTCCCTC
CTGCCACTACCCACGTGCTGATACCGGGTGTTGGTAAGAGCAAGCTTCCT
CTGACGCTATTTCAGTGCGGAGTGGTTAATCAAGTGCTCCTCGACATCGA
GGAGGAAGCGTTGCAGGAGCAGAGGGGGAATTTCGACCAGCAACAGGCAT
CAGGAGTGCTCATTGCTCGTGTTGACCTTCTGGGGCAGTCACTCGCCGCA
GCAGTGCAGGCTGTCGCTGCCGCAGGTGGCCCATGCACGTTCGACCTGGT
CGTTGACAAATCGTTCATGGATGTGTTCATCAGACAGGGCGGCAGCACCA
AGGTGAGGGCGGTTTGTCGCACATTCGCATTTCTGCGGTGCTCAGTCAGC
TTATCAGTGCCTGTAGTATGACTCGCAAGTTTGGCATTCGCCTTTCAGCC
TTATTCGGCTTGAGCCATCTAACGCGATCATGCGCTGCTGCACTGTATGC
GCCATGCACCAGGTGATGAAAGTGCTCTCGCAACTGACGTCCGACGGCGG
CACTTTCGTGGGCTTCTCTATGTTCCATGCCAAGTGGCGTCGCCTGCTTG
GCAAGAAAGTTTGGCATGCGCAGTACGCACACATGCCTGCGGCGCAGCAC
GGCAGCCGTACACGTCCTTTCGTCCACTCCTTCAGCGTTCCAACCGCGGT
GCTTGTGGCCACAAAAAGGAGATCGGCTGCCAAAGATACGGCGCCCAAGG
GTTGTAAGGCATGCGAAGTAACCCAACTTCACCCTCTACCTCCCTGCGTT
CCAGTAGAGAGCAGGGCTGCACTGAATCTTGCATGCACAGTGAAGTGCAT
GCAGTGCATAAGCACAGTTGCGGTGCATGACATGCCGTTTGATGCTGCGC
ACTACGGTGGCTGA
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Coding sequence (CDS) from alignment at Contig_36:684242..685205-

>mRNA_8396 ID=mRNA_8396|Name=jgi.p|Trimin1|165236|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=804bp|location=Sequence derived from alignment at Contig_36:684242..685205- (Tribonema minus UTEX_B_3156 )
ATGAGGACCTTCCTGAATCATCCTCATGGGGAGTGGCTGGTCAGCAGCGA
ATCAGCAGCCAACGTGGTGCTACGCATCATGGCGACGTTGAATCTCCCTC
CTGCCACTACCCACGTGCTGATACCGGGTGTTGGTAAGAGCAAGCTTCCT
CTGACGCTATTTCAGTGCGGAGTGGTTAATCAAGTGCTCCTCGACATCGA
GGAGGAAGCGTTGCAGGAGCAGAGGGGGAATTTCGACCAGCAACAGGCAT
CAGGAGTGCTCATTGCTCGTGTTGACCTTCTGGGGCAGTCACTCGCCGCA
GCAGTGCAGGCTGTCGCTGCCGCAGGTGGCCCATGCACGTTCGACCTGGT
CGTTGACAAATCGTTCATGGATGTGTTCATCAGACAGGGCGGCAGCACCA
AGGTGATGAAAGTGCTCTCGCAACTGACGTCCGACGGCGGCACTTTCGTG
GGCTTCTCTATGTTCCATGCCAAGTGGCGTCGCCTGCTTGGCAAGAAAGT
TTGGCATGCGCAGTACGCACACATGCCTGCGGCGCAGCACGGCAGCCGTA
CACGTCCTTTCGTCCACTCCTTCAGCGTTCCAACCGCGGTGCTTGTGGCC
ACAAAAAGGAGATCGGCTGCCAAAGATACGGCGCCCAAGGGTTGTAAGGC
ATGCGAAGTAACCCAACTTCACCCTCTACCTCCCTGCGTTCCAGTAGAGA
GCAGGGCTGCACTGAATCTTGCATGCACAGTGAAGTGCATGCAGTGCATA
AGCACAGTTGCGGTGCATGACATGCCGTTTGATGCTGCGCACTACGGTGG
CTGA
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