Trimin1|141148|gw1.36.23.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|141148
Unique NameTrimin1|141148|gw1.36.23.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length60
Homology
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A835Z2F1_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F1_9STRA)

HSP 1 Score: 128 bits (322), Expect = 6.690e-38
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCLISPLQLQSTIIVH 60
            PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCLISPLQLQSTIIVH
Sbjct:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCLISPLQLQSTIIVH 60          
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A835YWC4_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC4_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.030e-24
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 0
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL-----ISPLQLQSTIIVH 60
            PAH LCPISLDWLVNPVITPSGITYSR EL+LWVRENGTDP+ARS L     IS L +     VH
Sbjct:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 65          
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A835YZZ2_9STRA (U-box domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZZ2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.300e-24
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 47
            PAHFLCPI LDWLVNPVITPSG TYS+AELELWVRENGTDPIARS L
Sbjct:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRL 47          
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A836CKT5_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKT5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.290e-23
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 0
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 47
            PAHFLCP  LDWLVNP ITPSGITYSR ELELWVRENGTDPIARS L
Sbjct:    1 PAHFLCPTFLDWLVNPAITPSGITYSRGELELWVRENGTDPIARSRL 47          
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A836CBI8_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.880e-23
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 47
            PAHF+CPISLDW VNPV+TPSGITYSR ELELWV ENGTDPIARS L
Sbjct:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRL 47          
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A835Z5B2_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B2_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 7.540e-22
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 47
            PAHFL PISL WLVNPV+TPSGITYSR ELELWVRENGTDPIAR  L
Sbjct:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRL 47          
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A836C868_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C868_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.330e-21
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 0
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 47
            PAHFLCPISLDWLVNPV TPSGIT  R ELELWV ENGTDPIARS L
Sbjct:   21 PAHFLCPISLDWLVNPVTTPSGITSPRGELELWVSENGTDPIARSRL 67          
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A2N1MYB8_9GLOM (RING-type E3 ubiquitin transferase n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N1MYB8_9GLOM)

HSP 1 Score: 63.2 bits (152), Expect = 7.250e-11
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 0
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 47
            P+ ++CPISL+W+ +PV+TPSG++Y RA LE W+R +  DP+ R  L
Sbjct:   95 PSQYMCPISLNWMEDPVVTPSGVSYDRALLEEWLRNDPHDPLTREVL 141          
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A7S4FZ85_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FZ85_9EUGL)

HSP 1 Score: 63.2 bits (152), Expect = 1.760e-10
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 0
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDP-----IARSCLISPLQLQSTIIVH 60
            PAH LCPI+L  + +PVITPSG TY R  +E W+  +GTDP     + +  LI   +L+ T+ VH
Sbjct:  163 PAHLLCPITLQVMTDPVITPSGETYERQAIEQWLETHGTDPQTRRPLTKEQLIPNRRLKETVEVH 227          
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A7S1IXJ3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IXJ3_9EUGL)

HSP 1 Score: 59.3 bits (142), Expect = 5.130e-9
Identity = 22/47 (46.81%), Postives = 35/47 (74.47%), Query Frame = 0
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 47
            P H++CPI+++ + +PVITPSG +Y R+ LE W+ E G++P+ R  L
Sbjct:  165 PTHYICPITMEVMRDPVITPSGNSYERSALESWIMEKGSEPLTRESL 211          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2F1_9STRA6.690e-38100.00U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835YWC4_9STRA1.030e-2472.31U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835YZZ2_9STRA4.300e-2491.49U-box domain-containing protein (Fragment) n=2 Tax... [more]
A0A836CKT5_9STRA2.290e-2389.36U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A836CBI8_9STRA2.880e-2387.23U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z5B2_9STRA7.540e-2287.23U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A836C868_9STRA1.330e-2187.23U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A2N1MYB8_9GLOM7.250e-1151.06RING-type E3 ubiquitin transferase n=2 Tax=Rhizoph... [more]
A0A7S4FZ85_9EUGL1.760e-1046.15Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1IXJ3_9EUGL5.130e-946.81Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003613U-box domainSMARTSM00504Ubox_2coord: 3..60
e-value: 3.9E-6
score: 36.4
IPR003613U-box domainPFAMPF04564U-boxcoord: 1..47
e-value: 6.1E-11
score: 42.3
IPR003613U-box domainPROSITEPS51698U_BOXcoord: 1..60
score: 13.712601
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 1..56
e-value: 1.9E-14
score: 54.7
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 1..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_36contigContig_36:77192..77371 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141148mRNA_8347Tribonema minus UTEX_B_3156 mRNAContig_36 77192..77371 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|141148|gw1.36.23.1 ID=Trimin1|141148|gw1.36.23.1|Name=jgi.p|Trimin1|141148|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=60bp
PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCLISP
LQLQSTIIVH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003613Ubox_domain
IPR013083Znf_RING/FYVE/PHD