mRNA_8347 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|141148
Unique NamemRNA_8347
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A835Z2F1_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F1_9STRA)

HSP 1 Score: 128 bits (322), Expect = 6.690e-38
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCLISPLQLQSTIIVH 180
            PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCLISPLQLQSTIIVH
Sbjct:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCLISPLQLQSTIIVH 60
[Close]
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A835YWC4_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC4_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.030e-24
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL-----ISPLQLQSTIIVH 180
            PAH LCPISLDWLVNPVITPSGITYSR EL+LWVRENGTDP+ARS L     IS L +     VH
Sbjct:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 65
[Close]
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A835YZZ2_9STRA (U-box domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZZ2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.300e-24
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 141
            PAHFLCPI LDWLVNPVITPSG TYS+AELELWVRENGTDPIARS L
Sbjct:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRL 47
[Close]
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A836CKT5_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKT5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.290e-23
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 141
            PAHFLCP  LDWLVNP ITPSGITYSR ELELWVRENGTDPIARS L
Sbjct:    1 PAHFLCPTFLDWLVNPAITPSGITYSRGELELWVRENGTDPIARSRL 47
[Close]
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A836CBI8_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.880e-23
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 141
            PAHF+CPISLDW VNPV+TPSGITYSR ELELWV ENGTDPIARS L
Sbjct:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRL 47
[Close]
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A835Z5B2_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B2_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 7.540e-22
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 141
            PAHFL PISL WLVNPV+TPSGITYSR ELELWVRENGTDPIAR  L
Sbjct:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRL 47
[Close]
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A836C868_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C868_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.330e-21
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 141
            PAHFLCPISLDWLVNPV TPSGIT  R ELELWV ENGTDPIARS L
Sbjct:   21 PAHFLCPISLDWLVNPVTTPSGITSPRGELELWVSENGTDPIARSRL 67
[Close]
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A2N1MYB8_9GLOM (RING-type E3 ubiquitin transferase n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N1MYB8_9GLOM)

HSP 1 Score: 63.2 bits (152), Expect = 7.250e-11
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 141
            P+ ++CPISL+W+ +PV+TPSG++Y RA LE W+R +  DP+ R  L
Sbjct:   95 PSQYMCPISLNWMEDPVVTPSGVSYDRALLEEWLRNDPHDPLTREVL 141
[Close]
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A7S4FZ85_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FZ85_9EUGL)

HSP 1 Score: 63.2 bits (152), Expect = 1.760e-10
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDP-----IARSCLISPLQLQSTIIVH 180
            PAH LCPI+L  + +PVITPSG TY R  +E W+  +GTDP     + +  LI   +L+ T+ VH
Sbjct:  163 PAHLLCPITLQVMTDPVITPSGETYERQAIEQWLETHGTDPQTRRPLTKEQLIPNRRLKETVEVH 227
[Close]
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Match: A0A7S1IXJ3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IXJ3_9EUGL)

HSP 1 Score: 59.3 bits (142), Expect = 5.130e-9
Identity = 22/47 (46.81%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 141
            P H++CPI+++ + +PVITPSG +Y R+ LE W+ E G++P+ R  L
Sbjct:  165 PTHYICPITMEVMRDPVITPSGNSYERSALESWIMEKGSEPLTRESL 211
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|141148 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2F1_9STRA6.690e-38100.00U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835YWC4_9STRA1.030e-2472.31U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835YZZ2_9STRA4.300e-2491.49U-box domain-containing protein (Fragment) n=2 Tax... [more]
A0A836CKT5_9STRA2.290e-2389.36U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A836CBI8_9STRA2.880e-2387.23U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z5B2_9STRA7.540e-2287.23U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A836C868_9STRA1.330e-2187.23U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A2N1MYB8_9GLOM7.250e-1151.06RING-type E3 ubiquitin transferase n=2 Tax=Rhizoph... [more]
A0A7S4FZ85_9EUGL1.760e-1046.15Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1IXJ3_9EUGL5.130e-946.81Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_36contigContig_36:77192..77371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|141148|gw1.36.23.1
GOsGO:0008150,GO:0010033,GO:0010200,GO:0010243,GO:0042221,GO:0042493,GO:0050896,GO:1901698,GO:1901700
DescriptionRING-type E3 ubiquitin transferase
COG categoryH
Max annot lvl35493|Streptophyta
EggNOG OGs28JP5@1|root,2QS2D@2759|Eukaryota,37P0A@33090|Viridiplantae,3G7GF@35493|Streptophyta,4JM8T@91835|fabids
Evalue2.33e-08
Seed ortholog3983.cassava4.1_023462m
Hectar predicted targeting categoryother localisation
TranscriptId141470
TrackFilteredModels1
ProteinId141148
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141148gene_8347Tribonema minus UTEX_B_3156 geneContig_36 77192..77371 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8347_1exon_8347_1Tribonema minus UTEX_B_3156 exonContig_36 77192..77371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8347CDS_8347Tribonema minus UTEX_B_3156 CDSContig_36 77192..77371 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141148Trimin1|141148|gw1.36.23.1Tribonema minus UTEX_B_3156 polypeptideContig_36 77192..77371 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8347 ID=mRNA_8347|Name=jgi.p|Trimin1|141148|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=180bp|location=Sequence derived from alignment at Contig_36:77192..77371- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGGCACATTTCCTATGCCCCATTTCCCTAGATTGGCTTGTGAACCCTGT
AATCACCCCAAGTGGCATCACGTACTCGCGGGCGGAACTTGAGCTGTGGG
TGCGCGAGAATGGCACGGATCCTATTGCTCGCAGCTGCCTAATCTCACCA
TTGCAACTGCAGTCCACTATCATCGTGCAC
back to top

protein sequence of jgi.p|Trimin1|141148

>Trimin1|141148|gw1.36.23.1 ID=Trimin1|141148|gw1.36.23.1|Name=jgi.p|Trimin1|141148|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=60bp
PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCLISP
LQLQSTIIVH
back to top

mRNA from alignment at Contig_36:77192..77371-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8347 ID=mRNA_8347|Name=jgi.p|Trimin1|141148|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=180bp|location=Sequence derived from alignment at Contig_36:77192..77371- (Tribonema minus UTEX_B_3156 )
CCGGCACATTTCCTATGCCCCATTTCCCTAGATTGGCTTGTGAACCCTGT
AATCACCCCAAGTGGCATCACGTACTCGCGGGCGGAACTTGAGCTGTGGG
TGCGCGAGAATGGCACGGATCCTATTGCTCGCAGCTGCCTAATCTCACCA
TTGCAACTGCAGTCCACTATCATCGTGCAC
back to top

Coding sequence (CDS) from alignment at Contig_36:77192..77371-

>mRNA_8347 ID=mRNA_8347|Name=jgi.p|Trimin1|141148|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=180bp|location=Sequence derived from alignment at Contig_36:77192..77371- (Tribonema minus UTEX_B_3156 )
CCGGCACATTTCCTATGCCCCATTTCCCTAGATTGGCTTGTGAACCCTGT
AATCACCCCAAGTGGCATCACGTACTCGCGGGCGGAACTTGAGCTGTGGG
TGCGCGAGAATGGCACGGATCCTATTGCTCGCAGCTGCCTAATCTCACCA
TTGCAACTGCAGTCCACTATCATCGTGCAC
back to top