mRNA_8443 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|61678
Unique Name	mRNA_8443
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|61678 vs. uniprot
Match: A0A835YYP4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP4_9STRA)

HSP 1 Score: 362 bits (930), Expect = 1.640e-124
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 2

Query:   32 MLLSTAFARMSLAASAPAARAVVRAQAPSAANAQALLAGVWQAQGARGYYKARNGGYFGKVNRKNKDALKDEPPKPKVVKETVQQINDRVFGMFPAYVEAKAAGSATPVLDALSSEKPDPEMLKVALQLAKDVLPERAGPRKSREHKRARLKQKRIRAQHAVAKRQKIAAYALKVKKAQERRERGRALVATALEQEKAWQEEKAA 646
            MLLSTAFARMSLAASAPAARAVVRAQAPSAANAQALLAGVWQAQGARGYYKARNGGYFGKVNRKNKDALKDEPPKPKVVKETVQQINDRVFGMFPAYVEAKAAGSATPVLDALSSEKPDPEMLKVALQLAKDVLPERAGPRKSREHKRARLKQKRIRAQHAVAKRQKIAAYALKVKKAQERRERGRALVATALEQEKAWQEEKAA
Sbjct:    1 MLLSTAFARMSLAASAPAARAVVRAQAPSAANAQALLAGVWQAQGARGYYKARNGGYFGKVNRKNKDALKDEPPKPKVVKETVQQINDRVFGMFPAYVEAKAAGSATPVLDALSSEKPDPEMLKVALQLAKDVLPERAGPRKSREHKRARLKQKRIRAQHAVAKRQKIAAYALKVKKAQERRERGRALVATALEQEKAWQEEKAA 205

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|61678 vs. uniprot

BLAST of jgi.p|Trimin1|61678 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YYP4_9STRA	1.640e-124	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_36	contig	Contig_36:1040871..1044510 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|61678\|CE61677_289
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-12_005800.1
TranscriptId	62000
Track	FilteredModels1
ProteinId	61678

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|61678	gene_8443	Tribonema minus UTEX_B_3156	gene	Contig_36 1040871..1044510 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|61678	Trimin1\|61678\|CE61677_289	Tribonema minus UTEX_B_3156	polypeptide	Contig_36 1040902..1044375 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_8443_1	exon_8443_1	Tribonema minus UTEX_B_3156	exon	Contig_36 1040871..1041079 +
exon_8443_2	exon_8443_2	Tribonema minus UTEX_B_3156	exon	Contig_36 1041477..1041553 +
exon_8443_3	exon_8443_3	Tribonema minus UTEX_B_3156	exon	Contig_36 1042429..1042557 +
exon_8443_4	exon_8443_4	Tribonema minus UTEX_B_3156	exon	Contig_36 1043478..1043630 +
exon_8443_5	exon_8443_5	Tribonema minus UTEX_B_3156	exon	Contig_36 1044247..1044510 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_8443	UTR5_8443	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_36 1040871..1040901 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_8443	CDS_8443	Tribonema minus UTEX_B_3156	CDS	Contig_36 1040902..1041079 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_8443	UTR3_8443	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_36 1044376..1044510 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_36:1040871..1044510+
coding sequence from alignment at Contig_36:1040871..1044510+

spliced messenger RNA

>mRNA_8443 ID=mRNA_8443|Name=jgi.p|Trimin1|61678|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=832bp|location=Sequence derived from alignment at Contig_36:1040871..1044510+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGAGGGGCTCGTTGACGGTGGCTCGGCAGCCATGCTGTTAAGCACAGCGT
TCGCGCGGATGTCACTGGCGGCGAGCGCGCCAGCAGCACGAGCAGTGGTG
CGTGCACAAGCGCCAAGTGCTGCGAATGCACAGGCACTGCTGGCTGGAGT
TTGGCAAGCGCAAGGCGCAAGGGGATACTACAAGGCTAGGAATGGCGGCT
ATTTCGGAAAGGTTAACAGAAAGAACAAGGATGCATTGAAAGATGAGCCA
CCAAAGCCCAAGGTGGTCAAGGAGACCGTCCAGCAGATCAACGACAGGGT
GTTTGGGATGTTCCCTGCGTACGTGGAGGCAAAAGCAGCGGGATCTGCGA
CACCTGTTCTGGATGCTCTTAGCTCGGAGAAGCCAGACCCTGAAATGCTG
AAAGTAGCTCTTCAGCTGGCGAAGGATGTGTTGCCTGAGAGGGCAGGGCC
ACGCAAGTCTCGTGAGCACAAACGCGCAAGGTTAAAGCAGAAGAGAATCC
GTGCTCAGCACGCAGTGGCCAAGCGGCAGAAGATTGCGGCGTACGCATTG
AAAGTGAAAAAGGCGCAGGAGCGGAGGGAGCGTGGACGTGCTCTTGTAGC
AACTGCACTGGAGCAGGAGAAGGCGTGGCAAGAGGAGAAGGCAGCACGGC
GCGCACAGCAGTATCAGCAGCAACAGCAGCAGCGGCAGCAGGCATGAATG
AGTTGACAAGACAGGTTCCATCAATCGCTAGCCGCAAGTGCTATGACCAT
CAAGCATCAAGGCAACTCTGCATCGTTCAATTCTGTTGCCTGTGCATGAC
ACTGCAAATACAGGTATTGTCGAGTGCCTCCA

protein sequence of jgi.p|Trimin1|61678

>Trimin1|61678|CE61677_289 ID=Trimin1|61678|CE61677_289|Name=jgi.p|Trimin1|61678|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=222bp
MLLSTAFARMSLAASAPAARAVVRAQAPSAANAQALLAGVWQAQGARGYY
KARNGGYFGKVNRKNKDALKDEPPKPKVVKETVQQINDRVFGMFPAYVEA
KAAGSATPVLDALSSEKPDPEMLKVALQLAKDVLPERAGPRKSREHKRAR
LKQKRIRAQHAVAKRQKIAAYALKVKKAQERRERGRALVATALEQEKAWQ
EEKAARRAQQYQQQQQQRQQA*

mRNA from alignment at Contig_36:1040871..1044510+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8443 ID=mRNA_8443|Name=jgi.p|Trimin1|61678|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3640bp|location=Sequence derived from alignment at Contig_36:1040871..1044510+ (Tribonema minus UTEX_B_3156 )
GGAGGGGCTCGTTGACGGTGGCTCGGCAGCCATGCTGTTAAGCACAGCGT
TCGCGCGGATGTCACTGGCGGCGAGCGCGCCAGCAGCACGAGCAGTGGTG
CGTGCACAAGCGCCAAGTGCTGCGAATGCACAGGCACTGCTGGCTGGAGT
TTGGCAAGCGCAAGGCGCAAGGGGATACTACAAGGCTAGGAATGGCGGCT
ATTTCGGAAGTAAGTTGATTTTTTAGCGATTGGACGTACTGGCCTGGCCT
CCTCTTCCTTGAGGCTCTCTGTACACCTCTTGAAGTTGTATATTATGTCC
TGCACCGCATGGGCTGAGCACACGATAAATCGGGCTTTGCAATTACTATA
TCTCTTGAAGTTTCGATGGCTGATGATAGGAAAGCATTGGAGCAGTTGCT
GGCATACAGTCGTCATATCTTGCCAGCATTGTCGATTACAACTTGTGTCC
GCATTGCACAGCAACAGACCCCAGCTGGATGTCAGAGTTTTATTGCTTGG
TCATTGAAAGCGTCCAAGACATTGCCAGCAGACAGCCGAAGCCGACATAT
TCGTGCAGCGTGGTCATCTACAACATTTTGCCTGCACTTGCGCTGCTGCT
TGGCAGAGGTTAACAGAAAGAACAAGGATGCATTGAAAGATGAGCCACCA
AAGCCCAAGGTGGTCAAGGAGACCGTCCAGCAGGTACCAAGCCTTCATTT
TCTTGCACAACTTTACACCTGTGTCCGGAGTGTTTGACTCTCAAAGCCGT
TGATAGAGTGCCGTATCTGATCTCAAATCCCAGTGGGCCACGCATGGAGT
GGTCGACAACAAATGAGCCGCGCCCGCAGTGACTGACATTGCAAAGCACG
TCAATGGGTGCCCTGTTGCGCAGGCGATGCCTCTCACAGCATCAGTTTAC
TGTCGTTTTCACAGCGGACGACACATATGCATTACACTCTGGCTAAATGC
TGAATTGTCAGAGCAGGGCGGCATTGCCTTTGCCCAATTTCGGTGCAGTT
GGTTTCTTCACATGGTGCAAGCTAATCGCTGGTGTTTGACAGGTTTCATG
CTGACTGCACAAGCTACAGTTTTCATCAACCAATCGTACTCGCATAATTA
CTGTCCTTGGCTTACGTCTGACACACACCTCTTTGTGAAGGTACACAACA
CGAGACAGACGCACAATGTGTGATATAATGCATGTATGCTGCATCAGCTG
AAACATAATGCCAGCTGGTGTGGGCGTTCACCAGCCATTGCACGGTATAT
GACATGACATAGGGAGGGCAACAGCAGGGAACAAGTGAGATAATCGGACT
TGCACATTCAAACACTGGCAGTTGAGGGTTAGGGTTAGGCATGCCTGGCA
TCCACACTGACTGCCCAGCACCGCCCAGCACCGGGCAGTATATTGCTCGC
AACGTCAGTTGGCAGACAAGGCTCTGCTTCTCAATCATACTCATGCTCTC
CCTCACCCCTGCATGGCAGTGCCCACACACCACTTGTCGGCATTTATCCA
GCCTTGTTTGGTTGCCTGTGCTCCTGTACCACACCTCTTGTGTGCCGTTG
GTGAACAGATCAACGACAGGGTGTTTGGGATGTTCCCTGCGTACGTGGAG
GCAAAAGCAGCGGGATCTGCGACACCTGTTCTGGATGCTCTTAGCTCGGA
GAAGCCAGACCCTGAAATGCTGAAAGTAGCTCTTCAGGTATGTGTTGGTC
AAGGACGGCTTGCATTGCTGCAGTGAGCTGTGGCATCACAGCCTCAATTG
AATGTAGTTTATTGAAACTGTACGTCCATCAACGAGTGCCACGTGCAGTA
CGGCGTAAGCGCAAAGCGGTGGCATTGCATCAATCGTCAGCTCATCGCTT
GTTCACATCATTATCAATGAGTTGGCTGATCGCGTGTTCACACCGTTGTC
AATGGGATGAACCTTATGTTCCTGCCATATTCTTTGCTCGAGCTAAACAA
GTTGACTTGAGCATGTACTGGAGGAACAGCAAGTTGTTAAGCAGCAACAT
ATACTTTTTTCGTAAGGACTTACTACACAGAAGAAGCGCGCCCTAAGCGT
ACACTGATAAGGTCAAATGGCTGCATGCAGTCGCATTCAAGATGCTGTCA
CATCCATCAGCAACATGATGTGAAATACTACAATGATGGTGCCCTCACAG
ACTCTAGCGCTGTGCAGCACCATTCGGTAGTTCAGCATCCATATGTAACC
GTGTGGCACACATTCACACACATCATGTATACGCTGTGTTGGGGCCCCTT
GTGTTTTTGACAACAATTGATTCACGAGTCATGCACGATTCGGGCATGGC
CATATATGCAGTTTTGGGGGCGTACGTGTCTGATGTGTCATGAGCACCCC
ACATCGTGTTGAGACGTTATCAGTCACCTGCCTTCATGACGCCACTGTTT
GGGATGGGTCATGTCAGAGCGTGGTGCACACACGGCAGAGGTGACAACAG
ACTGCGTTGCGGCATTCAAATGTTGCTGCATACCCGTGAAGCTGTTGGCA
GCATCAGCCATTGGCATCTTATGCGGTCGTCATAGTCATTTGCGCTCGAT
GTCTGACCCGCTTCTGCCATACTGCAATGTGTGCTCTGCGCTTCAACACG
CCAACAGCTGGCGAAGGATGTGTTGCCTGAGAGGGCAGGGCCACGCAAGT
CTCGTGAGCACAAACGCGCAAGGTTAAAGCAGAAGAGAATCCGTGCTCAG
CACGCAGTGGCCAAGCGGCAGAAGATTGCGGCGTACGCATTGAAAGTGAA
AAAGGCGCAGGTGAGCTCTAGGCTGCTTAAACAGCTGTCACGGTGCTGAT
GTTGTGGTTCAGACCTAGGTTAATGTTAGCCTAGCCCAACTCCAACCTAA
TTTCAACTTCACCTCTAGGGTTCAAACCATTTACACATAGATTTGCAGAA
CAGTACAATTAGTGTGGTACTGGTAGGCAGCTAGTGCCTCATGCCCCTCA
AATTGCACCATGTAGTTGCGTGCATCTGCCTTTGAACCTGACAGCATGCA
GCATCACTGACGACACACAATCTCAAGCACAGTCTGATATTTGCTGTACA
CCACCTGCCTGTGCATGCATTATGCGGCATAAATCTTCAAAGCAGGTCAT
CTGCGGCATCGGTCGTGGGGGCAAGCTGCAATCTTGAAGTGCGTTTTGTC
ATGCGTTGTGCTGGAGGCAAAGCTGGGTCGTCCTGCTGCAGCTTGTATGT
TATGTTGTTCGGCCAGCTAGGCTGTGGTAGGCATCATGCAAGCCTTTACT
GACAGTCATGTTCTCTAGTTGAAGCGCTTGCTGCCACTTAAGAGCACGGC
TGTGTTCGAAACTGTTCCAACGTCACATCTAAACGTTGATGGTTGCACTG
TCCACATGTCATGATTGGCTCTTCAGGAGCGGAGGGAGCGTGGACGTGCT
CTTGTAGCAACTGCACTGGAGCAGGAGAAGGCGTGGCAAGAGGAGAAGGC
AGCACGGCGCGCACAGCAGTATCAGCAGCAACAGCAGCAGCGGCAGCAGG
CATGAATGAGTTGACAAGACAGGTTCCATCAATCGCTAGCCGCAAGTGCT
ATGACCATCAAGCATCAAGGCAACTCTGCATCGTTCAATTCTGTTGCCTG
TGCATGACACTGCAAATACAGGTATTGTCGAGTGCCTCCA

Coding sequence (CDS) from alignment at Contig_36:1040871..1044510+

>mRNA_8443 ID=mRNA_8443|Name=jgi.p|Trimin1|61678|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=666bp|location=Sequence derived from alignment at Contig_36:1040871..1044510+ (Tribonema minus UTEX_B_3156 )
ATGCTGTTAAGCACAGCGTTCGCGCGGATGTCACTGGCGGCGAGCGCGCC
AGCAGCACGAGCAGTGGTGCGTGCACAAGCGCCAAGTGCTGCGAATGCAC
AGGCACTGCTGGCTGGAGTTTGGCAAGCGCAAGGCGCAAGGGGATACTAC
AAGGCTAGGAATGGCGGCTATTTCGGAAAGGTTAACAGAAAGAACAAGGA
TGCATTGAAAGATGAGCCACCAAAGCCCAAGGTGGTCAAGGAGACCGTCC
AGCAGATCAACGACAGGGTGTTTGGGATGTTCCCTGCGTACGTGGAGGCA
AAAGCAGCGGGATCTGCGACACCTGTTCTGGATGCTCTTAGCTCGGAGAA
GCCAGACCCTGAAATGCTGAAAGTAGCTCTTCAGCTGGCGAAGGATGTGT
TGCCTGAGAGGGCAGGGCCACGCAAGTCTCGTGAGCACAAACGCGCAAGG
TTAAAGCAGAAGAGAATCCGTGCTCAGCACGCAGTGGCCAAGCGGCAGAA
GATTGCGGCGTACGCATTGAAAGTGAAAAAGGCGCAGGAGCGGAGGGAGC
GTGGACGTGCTCTTGTAGCAACTGCACTGGAGCAGGAGAAGGCGTGGCAA
GAGGAGAAGGCAGCACGGCGCGCACAGCAGTATCAGCAGCAACAGCAGCA
GCGGCAGCAGGCATGA