Trimin1|349085|estExt_Genemark1.C_Ctg_350096 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349085
Unique NameTrimin1|349085|estExt_Genemark1.C_Ctg_350096
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length671
Homology
BLAST of jgi.p|Trimin1|349085 vs. uniprot
Match: A0A835YXR4_9STRA (FtsJ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXR4_9STRA)

HSP 1 Score: 1058 bits (2737), Expect = 0.000e+0
Identity = 670/670 (100.00%), Postives = 670/670 (100.00%), Query Frame = 0
Query:    1 MVTITSTQPVEVPRCNVHRMHVLDPWRNPPCLPVQGNNAAAWVAVEARLVDAVRIAAAHDAPSQSLLPLSHKELHECWRRHLVDAVAADGVTAALQLPSSHAARVADTLRASAERGACHRVLATVACGTGPQHYCMVLVAAQDPVAFCARCGQDGALARIVDRMFMDCXXXXXXXXXXXXMIMFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVGQATATSLQELQSKLLALVTAXXXXXXXXXXXSAPERPVVLACIIASVPLRLPVVRFQACPRSLEKELLNDHALAMKAIKEPKYKDFAALRLHPIDFELVASVVYTQGLFFAGVVPRAAWPGDIVAASIDAHAPCRAFYKLREATDRAGIAYQQNWNALDMGASPGGWTHFLSPRVARVFAVDPGSMDADVLALPNVTYLRAKVQAASERASVRTRCWGRYGARSVXXXXXXXXXXXXXXSRCVRMRGGSGARAQRRRLALMTFSSREPHVFVLSXXXXXXXXXXXXVRARGSGGSGHGXXXXXXXXXXXGQQRRARRVDVLAQLPAMDLVVSDMNMAPDDLMQQVEAATAAGVVKDTAMLIMSFKDFCGPDNSDKGRDAQVARAMAALSLRWPRVQLLHLVAGGLRELTVVCRHEHHMAAXXXXXXXXXXXXXXAHQHSGSPGAAVCG 670
            MVTITSTQPVEVPRCNVHRMHVLDPWRNPPCLPVQGNNAAAWVAVEARLVDAVRIAAAHDAPSQSLLPLSHKELHECWRRHLVDAVAADGVTAALQLPSSHAARVADTLRASAERGACHRVLATVACGTGPQHYCMVLVAAQDPVAFCARCGQDGALARIVDRMFMDCXXXXXXXXXXXXMIMFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVGQATATSLQELQSKLLALVTAXXXXXXXXXXXSAPERPVVLACIIASVPLRLPVVRFQACPRSLEKELLNDHALAMKAIKEPKYKDFAALRLHPIDFELVASVVYTQGLFFAGVVPRAAWPGDIVAASIDAHAPCRAFYKLREATDRAGIAYQQNWNALDMGASPGGWTHFLSPRVARVFAVDPGSMDADVLALPNVTYLRAKVQAASERASVRTRCWGRYGARSVXXXXXXXXXXXXXXSRCVRMRGGSGARAQRRRLALMTFSSREPHVFVLSXXXXXXXXXXXXVRARGSGGSGHGXXXXXXXXXXXGQQRRARRVDVLAQLPAMDLVVSDMNMAPDDLMQQVEAATAAGVVKDTAMLIMSFKDFCGPDNSDKGRDAQVARAMAALSLRWPRVQLLHLVAGGLRELTVVCRHEHHMAAXXXXXXXXXXXXXXAHQHSGSPGAAVCG
Sbjct:    1 MVTITSTQPVEVPRCNVHRMHVLDPWRNPPCLPVQGNNAAAWVAVEARLVDAVRIAAAHDAPSQSLLPLSHKELHECWRRHLVDAVAADGVTAALQLPSSHAARVADTLRASAERGACHRVLATVACGTGPQHYCMVLVAAQDPVAFCARCGQDGALARIVDRMFMDCXXXXXXXXXXXXMIMFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVGQATATSLQELQSKLLALVTAXXXXXXXXXXXSAPERPVVLACIIASVPLRLPVVRFQACPRSLEKELLNDHALAMKAIKEPKYKDFAALRLHPIDFELVASVVYTQGLFFAGVVPRAAWPGDIVAASIDAHAPCRAFYKLREATDRAGIAYQQNWNALDMGASPGGWTHFLSPRVARVFAVDPGSMDADVLALPNVTYLRAKVQAASERASVRTRCWGRYGARSVXXXXXXXXXXXXXXSRCVRMRGGSGARAQRRRLALMTFSSREPHVFVLSXXXXXXXXXXXXVRARGSGGSGHGXXXXXXXXXXXGQQRRARRVDVLAQLPAMDLVVSDMNMAPDDLMQQVEAATAAGVVKDTAMLIMSFKDFCGPDNSDKGRDAQVARAMAALSLRWPRVQLLHLVAGGLRELTVVCRHEHHMAAXXXXXXXXXXXXXXAHQHSGSPGAAVCG 670          
BLAST of jgi.p|Trimin1|349085 vs. uniprot
Match: D8LMA3_ECTSI (FtsJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA3_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 9.970e-19
Identity = 46/111 (41.44%), Postives = 74/111 (66.67%), Query Frame = 0
Query:  318 FELVASVVYTQGLFFAGVVPRAAWPGDIVAASIDAHAPCRAFYKLREATDRAGIAYQQNWNALDMGASPGGWTHFLSPRVARVFAVDPGSMDADVLALPNVTYLRAKVQAA 428
            F  V S+V+ +G F  G+   A     I+  + +  A CRA+YK++E T RA +++ ++W A+D+GA+PGGWT FL+ +  RV +VDP  +D+ VLALPNV +++  ++AA
Sbjct:   90 FTHVLSLVFARGAFLWGLAQAATHGRSIIDNNNEDTAVCRAYYKIKEVTSRADLSFGEDWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELDSAVLALPNVVHVQKLIEAA 200          
BLAST of jgi.p|Trimin1|349085 vs. uniprot
Match: A0A1V9ZWL8_9STRA (Ribosomal RNA large subunit methyltransferase J n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWL8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.210e-11
Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 0
Query:  312 RLHPIDFELVASVVYTQGLFFAGVVPRAAWPGDIVAASIDAHAPCRAFYKLREATDRAGIAYQQNWNALDMGASPGGWTHFLSPRVARVFAVDPGSMDADV 412
            R+HP D+     VVY   LF  GV+ R    G+        + PCRA++KL EA     + ++  ++ALD+GASPGGWT FL+   A V AVDPG +   V
Sbjct:  112 RVHPKDYTHELHVVYAAPLFLFGVIER---NGEFGHVDEILNVPCRAYHKLAEALADC-VPFKDGYHALDIGASPGGWTEFLAKNGAHVVAVDPGEITVHV 208          
BLAST of jgi.p|Trimin1|349085 vs. uniprot
Match: C1N4H5_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1N4H5_MICPC)

HSP 1 Score: 72.8 bits (177), Expect = 4.850e-10
Identity = 37/84 (44.05%), Postives = 57/84 (67.86%), Query Frame = 0
Query:  355 PCRAFYKLREATDRAGIAYQQNWNALDMGASPGGWTHFLSPRVAR-----VFAVDPGSM--DADVLALPN-VTYLRAKVQAASE 430
            PCRAFYKL+EA  RA +  +++W  +D+GASPGGWTH+++ R+       V+A+DPG++  D    +LP  VT+L  + + AS+
Sbjct:  155 PCRAFYKLQEACLRARVTVERDWRCVDVGASPGGWTHYIARRLDAERGGVVYAIDPGAIAIDGAGASLPACVTHLAMRAEDASD 238          
BLAST of jgi.p|Trimin1|349085 vs. uniprot
Match: A0A3A9DC96_9BACT (FtsJ domain-containing protein n=1 Tax=bacterium D16-50 TaxID=2320112 RepID=A0A3A9DC96_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 1.060e-9
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 0
Query:  356 CRAFYKLREATDRAGIAYQQNWNALDMGASPGGWTHFLSPRVARVFAVDPGSMDADVLALPNVTYLRAKVQ 426
            CRA +K+ EA +  GI  ++   ALD+GA+PGGWTH+L+ +  RV AVDP ++D  +L  PNV + R   Q
Sbjct:  187 CRAEFKIEEAFEVFGIQVKEGMKALDLGAAPGGWTHYLNKKGIRVDAVDPAALDDALLEQPNVRHYRMTAQ 257          
BLAST of jgi.p|Trimin1|349085 vs. uniprot
Match: A0A8J2SSI2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSI2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.240e-9
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 0
Query:  357 RAFYKLREATDRAGIAYQQNWNALDMGASPGGWTHFLSPRVARVFAVDPGSMDADVLALPNVTYLRAKVQAA 428
            RA++KL EA D AG+      +ALD+GA+PGGWT  L  R A V AVDPG+++  V A P V +++ K QAA
Sbjct:  274 RAYFKLEEALDLAGVEDLHGSHALDLGAAPGGWTESLLDRGASVVAVDPGALNESVGARPGVRHIQKKSQAA 345          
BLAST of jgi.p|Trimin1|349085 vs. uniprot
Match: T0Z9T1_9ZZZZ (THUMP domain-containing protein n=1 Tax=mine drainage metagenome TaxID=410659 RepID=T0Z9T1_9ZZZZ)

HSP 1 Score: 68.9 bits (167), Expect = 6.610e-9
Identity = 44/134 (32.84%), Postives = 64/134 (47.76%), Query Frame = 0
Query:  276 VRFQACPRSLEKELLNDHALAMKAIKEPKYKDFAALRLHPIDFELVASVVYTQGLFFAGVVPRAAWPGDIVAASIDAHAPCRAFYKLREATDRAGIAYQQNWNALDMGASPGGWTHFLSPRVARVFAVDPGSMD 409
            +R Q  P+S+E  +++               D   + L P  F  VA +V   G +F G+  R  +       S       RA+YK+ EA  R GI +  +   LD+GA+PGGW+ FLS RVA   +VDP  M+
Sbjct:   98 IRLQVYPKSIEGGVIDAF-------------DSHGVALDPSGFTHVAYIVSVDGRYFIGLYGRDMYFSK---ESQQEKQISRAYYKIAEAASRFGIQFSSSARVLDIGAAPGGWSQFLSERVALCVSVDPAKME 215          
BLAST of jgi.p|Trimin1|349085 vs. uniprot
Match: A0A7W7FWF2_9PSEU (23S rRNA (Cytidine2498-2'-O)-methyltransferase n=3 Tax=Crossiella TaxID=130795 RepID=A0A7W7FWF2_9PSEU)

HSP 1 Score: 65.9 bits (159), Expect = 7.410e-8
Identity = 46/121 (38.02%), Postives = 58/121 (47.93%), Query Frame = 0
Query:  319 ELVASVVYTQ---GLFFAGVVPRAA-WPGDIVAASIDAHAPCRAFYKLREATDRAGIAYQQNWNALDMGASPGGWTHFLSPRVARVFAVDPGSMDADVLALPNVTYLRAKVQAASERASVR 435
            E V S V +     L FAG     + WPG  V  +  A   CRA +KL E      +   +   A+D+GASPGGWT  L  R   V+AVDPG +D  +LA P V + R       ER   R
Sbjct:  135 EQVLSAVISDTHVSLGFAGTAHALSDWPGGRVRLAKPAGQICRAEFKLEELFKLVDLPLPRGGTAVDLGASPGGWTRILRERGLEVWAVDPGDLDPRLLADPLVHHERTTAGRFFERTRQR 255          
BLAST of jgi.p|Trimin1|349085 vs. uniprot
Match: A0A067C4Z0_SAPPC (FtsJ domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C4Z0_SAPPC)

HSP 1 Score: 65.5 bits (158), Expect = 9.450e-8
Identity = 43/98 (43.88%), Postives = 56/98 (57.14%), Query Frame = 0
Query:  325 VYTQGLFFAGVVPRAAWPGDIVAASIDAHAPCRAFYKLREAT-DRAGIAYQQNWNALDMGASPGGWTHFLSPRVARVFAVDPGSMDADVLALPNVTYL 421
            V+   +F  GVVPR      I  A +    PCRA++KL EA  D+    +   + A+D+GASPGGWT FLS   A V AVDPG +    +A PNV +L
Sbjct:  127 VHDAPVFRFGVVPRRV----IAEAPLADAVPCRAYHKLAEALLDQT--PFPTGYRAIDIGASPGGWTEFLSSAGAAVVAVDPGEL---TVAHPNVLHL 215          
BLAST of jgi.p|Trimin1|349085 vs. uniprot
Match: T0R427_SAPDV (FtsJ domain-containing protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R427_SAPDV)

HSP 1 Score: 65.1 bits (157), Expect = 1.300e-7
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 0
Query:  325 VYTQGLFFAGVVPRAAWPGDIVAASIDAHAPCRAFYKLREAT-DRAGIAYQQNWNALDMGASPGGWTHFLSPRVARVFAVDPGSMDADVLALPNVTYLRAKVQAASERAS 433
            V+   +F  GVVPR      +  A +    PCRA++KL EA  D+    +   + A+D+GASPGGWT FLS   A V AVDPG +   ++  PNV ++   ++ A ++ S
Sbjct:  127 VHDATVFRFGVVPRRV----VAEAPLADDVPCRAYHKLAEALLDQT--PFPTGYRAIDIGASPGGWTEFLSSAGATVVAVDPGEL---IVTHPNVLHVPLLLEHALDQIS 227          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349085 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXR4_9STRA0.000e+0100.00FtsJ domain-containing protein n=1 Tax=Tribonema m... [more]
D8LMA3_ECTSI9.970e-1941.44FtsJ domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A1V9ZWL8_9STRA3.210e-1141.58Ribosomal RNA large subunit methyltransferase J n=... [more]
C1N4H5_MICPC4.850e-1044.05Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A3A9DC96_9BACT1.060e-946.48FtsJ domain-containing protein n=1 Tax=bacterium D... [more]
A0A8J2SSI2_9STRA3.240e-950.00Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
T0Z9T1_9ZZZZ6.610e-932.84THUMP domain-containing protein n=1 Tax=mine drain... [more]
A0A7W7FWF2_9PSEU7.410e-838.0223S rRNA (Cytidine2498-2'-O)-methyltransferase n=3... [more]
A0A067C4Z0_SAPPC9.450e-843.88FtsJ domain-containing protein n=1 Tax=Saprolegnia... [more]
T0R427_SAPDV1.300e-738.18FtsJ domain-containing protein n=2 Tax=Saprolegnia... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 348..439
e-value: 1.7E-20
score: 75.6
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilySUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 351..585
IPR002877Ribosomal RNA methyltransferase, FtsJ domainPFAMPF01728FtsJcoord: 356..558
e-value: 5.2E-12
score: 46.3
NoneNo IPR availablePIRSRPIRSR028774-2PIRSR028774-2coord: 345..423
e-value: 2.2E-9
score: 34.0
NoneNo IPR availablePANTHERPTHR37524RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE Mcoord: 340..423

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_35contigContig_35:863766..878006 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349085mRNA_7779Tribonema minus UTEX_B_3156 mRNAContig_35 863394..878006 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349085|estExt_Genemark1.C_Ctg_350096 ID=Trimin1|349085|estExt_Genemark1.C_Ctg_350096|Name=jgi.p|Trimin1|349085|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=671bp
MVTITSTQPVEVPRCNVHRMHVLDPWRNPPCLPVQGNNAAAWVAVEARLV
DAVRIAAAHDAPSQSLLPLSHKELHECWRRHLVDAVAADGVTAALQLPSS
HAARVADTLRASAERGACHRVLATVACGTGPQHYCMVLVAAQDPVAFCAR
CGQDGALARIVDRMFMDCRRDGALARIVDRMIMFCARCGRDGALARVVDR
MFMYCRCDGALARVIDRMFMVGQATATSLQELQSKLLALVTAAAATTAAA
GAASAPERPVVLACIIASVPLRLPVVRFQACPRSLEKELLNDHALAMKAI
KEPKYKDFAALRLHPIDFELVASVVYTQGLFFAGVVPRAAWPGDIVAASI
DAHAPCRAFYKLREATDRAGIAYQQNWNALDMGASPGGWTHFLSPRVARV
FAVDPGSMDADVLALPNVTYLRAKVQAASERASVRTRCWGRYGARSVLAL
PNVTRLRAKVQSRCVRMRGGSGARAQRRRLALMTFSSREPHVFVLSTPNV
THLCAKVQVRARGSGGSGHGPNVTHLRAKVQGQQRRARRVDVLAQLPAMD
LVVSDMNMAPDDLMQQVEAATAAGVVKDTAMLIMSFKDFCGPDNSDKGRD
AQVARAMAALSLRWPRVQLLHLVAGGLRELTVVCRHEHHMAAAATAVAAA
AEAPEPAHQHSGSPGAAVCG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases_sf
IPR002877RNA_MeTrfase_FtsJ_dom