mRNA_7738 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165055
Unique NamemRNA_7738
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|165055 vs. uniprot
Match: A0A835YWG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG0_9STRA)

HSP 1 Score: 636 bits (1641), Expect = 3.070e-230
Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 1 
Query:    1 MDLANVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESSGSEAPAEERTLARTIGEVMRRNNKQAELDLSRMRDNASIATKKACAEFAVDSYEMLRSMGAADDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAAAKMVKRNVPFHGQIYGENTYWARDEDLMKQAIVAVNG 984
            MDLANVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESSGSEAPAEERTLARTIGEVMRRNNKQAELDLSRMRDNASIATKKACAEFAVDSYEMLRSMGAADDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAAAKMVKRNVPFHGQIYGENTYWARDEDLMKQAIVAVNG
Sbjct:    1 MDLANVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESSGSEAPAEERTLARTIGEVMRRNNKQAELDLSRMRDNASIATKKACAEFAVDSYEMLRSMGAADDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAAAKMVKRNVPFHGQIYGENTYWARDEDLMKQAIVAVNG 328
[Close]
BLAST of jgi.p|Trimin1|165055 vs. uniprot
Match: A0A835Z3L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L4_9STRA)

HSP 1 Score: 408 bits (1049), Expect = 3.350e-140
Identity = 217/326 (66.56%), Postives = 256/326 (78.53%), Query Frame = 1 
Query:    1 MDLANVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESSGSEAPAEERTLARTIGEVMRRNNKQAELDLSRMRDNASIATKKACAEFAVDSYEMLRSMGAADDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAAAKMVKRNVPFHGQIYGENTYWARDEDLMKQAIVAV 978
            MDL +VTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDD+GT +GTRC QLRIN KG+LT CADAKTLVEIVWSLPGKAAREFRR SA  VCRVLGGDLSIV+EVEARHHALQ T GGRAAQ FLL D  S   +   E      +   +    +++    +RMR+ A+IATKKA A+FAV+ YE+LRSMGAAD RD ITFSDAVRR V +GGGAA  +VEA A+ ADDPT+PT  CD +YRGEEISMH+V+ +  ++I    EG +G+ +KALY +RYG+AAAA +  RN+ F GQI+  N+YWARD DLMK+A+ +V
Sbjct:    1 MDLDDVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSES---SVGGEMISGLPLELALANETQKSAYFEARMREEAAIATKKARAQFAVEGYELLRSMGAADHRDCITFSDAVRRAVTDGGGAA--VVEARALAADDPTIPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAANIPTRNIEFRGQIWPANSYWARDADLMKRAVQSV 321
[Close]
BLAST of jgi.p|Trimin1|165055 vs. uniprot
Match: A0A835YX96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX96_9STRA)

HSP 1 Score: 335 bits (858), Expect = 6.430e-111
Identity = 187/341 (54.84%), Postives = 235/341 (68.91%), Query Frame = 1 
Query:    1 MDLANVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESSGSEAPAE---------ERTLARTIGEVM------RRNNKQAELDLSRMRDNASIATKKACAEFAVDSYEMLRSMGAADDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAAAKMVKRNVPFHGQIYGENTYWARDEDLMKQAIVAV 978
            MDLANVTA+IRVD AT  GSVIDVI++V       A+T     L      +      +RINGKGK T CA A+ LVE+V+ LPGKAAR+FRR SA TVCRVLGGDLSIV EVEARHHALQ T GGRAAQ+FLL D+ S +    +         E TLA             +R N++ +L L R RD A++A KKA A+FAV+SYE+LR+MG ADDRDRITFSDAVRR V +GGG A A+VEA AV  DDP VPT +C+ +YRG+EISMH+V+S+  ++I +  EG +G+ ++ALY  RYGEAAAA + KR++ F GQ++  N YW RD DLM+ A+ +V
Sbjct:    1 MDLANVTASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATGCGQVGQVRALPVELTLASQAERSAYFQAWSKRTNEEGDLILKRKRDEAALAAKKARAQFAVESYELLRTMGVADDRDRITFSDAVRRAVGDGGGDAEAVVEALAVGIDDPAVPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDRYGEAAAASIPKRSIEFRGQMFPANAYWKRDADLMRAAVQSV 341
[Close]
BLAST of jgi.p|Trimin1|165055 vs. uniprot
Match: A0A835Z1W0_9STRA (Uncharacterized protein n=8 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W0_9STRA)

HSP 1 Score: 271 bits (694), Expect = 2.510e-86
Identity = 165/333 (49.55%), Postives = 216/333 (64.86%), Query Frame = 1 
Query:    1 MDLANVTAAIRVDTATNKGSVIDVIKIVQ-SCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESS--GSEAPAE-------ERTLARTIGEVMRRNNKQAELDLSRMRDNASIATKKACAEFAVDSYEMLRSMGAADDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAAAKMVKRNVPFHGQIYGENTYWARDEDLMKQAI 969
            M+LA++ AAIR+D A+  GSV+DVI++V     ++ AS+  KRL  ++   + + C QLRING GKLT CADA+TLVEIVWSLPGK AR FRRTSA TVCRVLGGD+S+V E+E R  ALQ+T  GRAAQDFL+GD S     E PAE       +RTL   +   M    + A +D  + +  A I           + +++L S G AD RDRI F D VRR+V      AGA++ A  +  DDP+V T      +RG EISMHSV+++  +RI  G E  +G+ VKALY  +YG AAAA + KRNVPF G+++ ENTYW RD+DLM++AI
Sbjct:    1 MELADIPAAIRIDLASGMGSVLDVIRLVNPEIPSNQASSTFKRLALEL-PDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVNEIEGRCRALQATEVGRAAQDFLIGDGSVQVSRELPAELQLATPEQRTLF--VASWMH-ERRLALIDREKTQQLALIK----------NGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDAGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAI 319
[Close]
BLAST of jgi.p|Trimin1|165055 vs. uniprot
Match: A0A835ZAN0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN0_9STRA)

HSP 1 Score: 244 bits (623), Expect = 9.400e-70
Identity = 150/327 (45.87%), Postives = 196/327 (59.94%), Query Frame = 1 
Query:    1 MDLANVTAAIRVDTATNKGSVIDVIKIVQ-SCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESSGSEAPAEERTLARTIGEVMRRNNKQAELDLSRMRDNASIATKKACAEFAVDSYEMLRSMGAADDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAAAKMVKRNVPFHGQIYGENTYWARDEDLMKQAIVAV 978
            ++LA++ AAIR++ A+  GSV+DVI++V     ++ AS+  KR+  ++   + + C QLRING GKLT CADA+TLVEIV SLPGK AR FRRTSA TVCRVLGGD+S+V E+E R  ALQ+T  GRAAQDFL+GD S                         Q   DL               AE  + + E     G AD RDRI F D VRR+V       GA++ A  +  DDP+V T      +RG EISM SV+++  +RI  G E  +G+ VKALY  +YG AAAA + KRN+ F GQI+ ENTYW R++D M++AI  V
Sbjct:  133 LELADIPAAIRINLASGMGSVLDVIRLVNPEIPSNQASSTFKRVATEL-PDMASSCCQLRINGNGKLTPCADARTLVEIVGSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEMGRAAQDFLIGDGSD------------------------QVSRDLP--------------AELQLATPEQRTFFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPSAHVAHRGPEISMQSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNITFRGQIFAENTYWKRNQDHMEEAISTV 420
[Close]
BLAST of jgi.p|Trimin1|165055 vs. uniprot
Match: A0A835YN01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN01_9STRA)

HSP 1 Score: 199 bits (505), Expect = 4.380e-59
Identity = 132/327 (40.37%), Postives = 169/327 (51.68%), Query Frame = 1 
Query:    1 MDLANVTAAIRVDTATNKGSVIDVIKIVQ-SCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESSGSEAPAEERTLARTIGEVMRRNNKQAELDLSRMRDNASIATKKACAEFAVDSYEMLRSMGAADDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAAAKMVKRNVPFHGQIYGENTYWARDEDLMKQAIVAV 978
            M+LA+  AAIR+D A+  GSV+DVI++V     ++ AS   KRL  ++   + + C QLRI G GKLT CADA+TLVEIVWSLPGK AR FRRTSA TVCRVLGGD+S+V E+E R  ALQ+T                  E PA                                                        DD                     GA++ A  +  DDP+VPT      ++G EISMHSV+++  +RI  G E  +G+ VKALY  +YG AAAA + KRN+PF GQI+ ENTYW RD+DLM++AI  V
Sbjct:    1 MELADTPAAIRIDLASGMGSVLDVIRLVNPEIPSNQASFTFKRLATEL-PDVASSCRQLRIYGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQAT------------------EPPAH-------------------------------------------------------DD---------------------GALIVARPMSEDDPSVPTPLAQVAHQGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNIPFRGQIFAENTYWKRDQDLMEEAIHTV 232
[Close]
BLAST of jgi.p|Trimin1|165055 vs. uniprot
Match: A0A6H5JW74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW74_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 2.930e-54
Identity = 136/325 (41.85%), Postives = 187/325 (57.54%), Query Frame = 1 
Query:   22 AAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESSGSEA----PAEERTLARTIGEVMRRNNKQAELDLSRMRDNASIATKKACAEFAVDSYEMLRSMGAA-DDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAA-AKMVKRNVPFHGQIYGENTYWARDEDLMKQAIVAV 978
            A IRVD     GSVID I++V   ++S A+T   RL+      +GTRCTQLRINGKGK T  ADAKTL+EIVW LPGK AREFRR S++ VCR+LGGDLS+V E+EARH  LQST  GRA Q+FLLG+     E     PA  R L   + +  +   +  EL+L    + + +A K+   +  V SY  L+ +G   D R  I   D V  +  +      A+  A  +   D T PT +  A  RG+E  +  VSSK  +R+     G VG+ +K +Y+++Y  A   +   +R   F+G+   EN Y+ RDED++++AI AV
Sbjct:  907 ATIRVDKNEQVGSVIDTIRMVLGGDSSAANTSLNRLIL-ANEELGTRCTQLRINGKGKFTPVADAKTLIEIVWLLPGKKAREFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRATQEFLLGEREEAVETFDGMPAGFRYLP--VEDRAQFAKQMLELNL----EMSKVALKRKRVDDMVQSYRALQDLGVLLDGRTLIELRDNVTILSRQDVMVNNAVAIAAPL-LHDSTTPTHELGADQRGKETGIVVVSSKIGIRVPQNMSGTVGKMMKQMYIRKYELAPDFSGFARRQTLFNGRPILENLYFERDEDIIEEAIRAV 1223
[Close]
BLAST of jgi.p|Trimin1|165055 vs. uniprot
Match: A0A835YZ27_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ27_9STRA)

HSP 1 Score: 174 bits (442), Expect = 5.960e-51
Identity = 92/141 (65.25%), Postives = 108/141 (76.60%), Query Frame = 1 
Query:    1 MDLANVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESSGSE 423
            M+L+N+TAAIRVDTATN+GSVIDVI++V   N +  S     +L ++   +    + LRIN KGK T CADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIV+E+E RHH LQ T GGRAAQ F+L D    S+
Sbjct:    1 MELSNITAAIRVDTATNQGSVIDVIRLV---NPNPTSGNAANVLANLTKDVTLNYSHLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFMLADSDDSSD 138
[Close]
BLAST of jgi.p|Trimin1|165055 vs. uniprot
Match: B5LWM3_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM3_9PHYC)

HSP 1 Score: 181 bits (458), Expect = 6.210e-51
Identity = 125/329 (37.99%), Postives = 174/329 (52.89%), Query Frame = 1 
Query:   16 VTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDV---GTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESSGSEAPAEERTLARTIGEVMRRNNKQAELDLSRMRDNASIATKKACAEFAVDSYEMLRSMGAADD-------RDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAAAK-MVKRNVPFHGQIYGENTYWARDEDLMKQAI 969
            V A IR+D AT KGSVIDVI++V  C+AS A+T  +RL DD+       G  C+ LRINGKG+LT  A+AKTLVEI++SLPGK AREFRR SA  +CR+LGGD ++V E+E R   L+ST  GR  Q FLLG+    ++       +     E  +R     E+         ++A K+   E  + SY  LRS+G   D       RD ++     +  + E   +   +V        DP  PT       RG E  +  V+SK  +R+     G +G+ +K LY K+Y         VKR   + G+   EN Y+ RDED++ +AI
Sbjct:    9 VNATIRIDNATQKGSVIDVIRMVLRCDASSANTAFRRLKDDMLKSRAEFGAACSHLRINGKGRLTPVANAKTLVEIIFSLPGKLAREFRRKSASQICRLLGGDPTLVFEIEQRRAELESTPKGRVTQAFLLGESRHDTDDDFTGMPVGFRYLEESQRRAVAGEV--------VALALKRQRIEDMIGSYASLRSLGVELDPRTMVEIRDNVSLLTKRKLSIEEREDSTTRLV--------DPKTPTHVLGREERGNESGIVVVASKMGVRVPPSMSGPIGKLMKILYKKKYDLPNDWNDFVKRQTLYLGRPVMENCYYERDEDIITEAI 321
[Close]
BLAST of jgi.p|Trimin1|165055 vs. uniprot
Match: A0A835YNN1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN1_9STRA)

HSP 1 Score: 172 bits (437), Expect = 2.690e-50
Identity = 94/134 (70.15%), Postives = 105/134 (78.36%), Query Frame = 1 
Query:    1 MDLANVTAAIRVDTATNKGSVIDVIKIVQ-SCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLL 399
            MDL N+TA IRVD ATNKGSVIDVI++V     +  ASTY  RL  ++   I T+C  LRINGKGK +  ADAKTLVEIV+SLPGKAAREFRRTSAKTVCRVLGGDLSIV+E+E RHH LQ T GGRAAQ F L
Sbjct:    1 MDLTNITATIRVDAATNKGSVIDVIRLVHPDIESKHASTYFTRLTTEI-PEIATQCGLLRINGKGKPSPVADAKTLVEIVFSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEQRHHTLQQTEGGRAAQAFTL 133
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165055 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YWG0_9STRA3.070e-230100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3L4_9STRA3.350e-14066.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YX96_9STRA6.430e-11154.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1W0_9STRA2.510e-8649.55Uncharacterized protein n=8 Tax=Tribonema minus Ta... [more]
A0A835ZAN0_9STRA9.400e-7045.87Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YN01_9STRA4.380e-5940.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JW74_9PHAE2.930e-5441.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZ27_9STRA5.960e-5165.25Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
B5LWM3_9PHYC6.210e-5137.99Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A835YNN1_9STRA2.690e-5070.15Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_35contigContig_35:520057..521112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165055|e_gw1.35.111.1
Max annot lvl2880.D8LP49|-
EggNOG OGs2EUDG@1|root,2SWJG@2759|Eukaryota
Evalue6.49e-50
Seed ortholog2880.D8LP49
Hectar predicted targeting categoryother localisation
TranscriptId165377
TrackFilteredModels1
ProteinId165055
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165055gene_7738Tribonema minus UTEX_B_3156 geneContig_35 520057..521112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165055Trimin1|165055|e_gw1.35.111.1Tribonema minus UTEX_B_3156 polypeptideContig_35 520057..521112 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7738_2exon_7738_2Tribonema minus UTEX_B_3156 exonContig_35 520057..520569 -
exon_7738_1exon_7738_1Tribonema minus UTEX_B_3156 exonContig_35 520639..521112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7738CDS_7738Tribonema minus UTEX_B_3156 CDSContig_35 520639..521112 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7738 ID=mRNA_7738|Name=jgi.p|Trimin1|165055|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=987bp|location=Sequence derived from alignment at Contig_35:520057..521112- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTCGCAAATGTTACCGCAGCGATCCGGGTGGACACTGCGACCAA
CAAAGGCTCGGTCATCGATGTGATCAAGATTGTGCAATCGTGCAATGCAA
GCGATGCATCCACTTACTGTAAGAGACTGTTGGATGACGTTGGGACACAC
ATTGGGACCCGATGTACCCAACTTCGGATCAACGGAAAGGGAAAACTTAC
CTTCTGTGCCGACGCCAAAACATTGGTCGAAATCGTGTGGTCACTTCCGG
GCAAGGCCGCCCGCGAGTTTCGGCGCACCAGTGCCAAGACGGTGTGCAGG
GTGCTCGGCGGCGACCTCTCGATCGTGCGCGAGGTGGAGGCGCGCCACCA
CGCGCTCCAGAGCACAGGGGGCGGCAGGGCAGCGCAGGACTTCCTGCTTG
GAGACGAGTCGTCAGGCAGCGAGGCCCCGGCCGAGGAGCGGACCCTCGCC
AGGACCATCGGCGAGGTGATGCGCAGGAACAACAAACAGGCGGAGCTCGA
TCTGAGCAGGATGAGAGACAATGCTTCGATCGCCACCAAGAAGGCGTGCG
CAGAGTTCGCGGTCGATTCTTACGAAATGCTGCGCTCCATGGGGGCGGCG
GACGACCGCGACCGCATCACCTTCTCCGACGCCGTGAGGCGCATCGTCGC
CGAGGGCGGAGGAGCCGCTGGAGCCATCGTCGAGGCGGGGGCGGTGCCCG
CAGACGACCCTACGGTCCCCACGTCCGACTGCGACGCCTACTACAGAGGC
GAGGAGATCTCGATGCACAGCGTTTCGAGCAAGTACAGCCTCCGCATCGG
GAACGGGCGCGAAGGGGCCGTCGGGCGCGCCGTGAAGGCGTTGTACTTGA
AGAGATACGGCGAAGCGGCAGCCGCCAAGATGGTGAAGCGAAACGTTCCT
TTCCACGGACAGATATATGGTGAAAACACGTACTGGGCGCGCGACGAAGA
CCTGATGAAACAGGCGATCGTGGCGGTGAACGGGTGA
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protein sequence of jgi.p|Trimin1|165055

>Trimin1|165055|e_gw1.35.111.1 ID=Trimin1|165055|e_gw1.35.111.1|Name=jgi.p|Trimin1|165055|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=329bp
MDLANVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDVGTH
IGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCR
VLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESSGSEAPAEERTLA
RTIGEVMRRNNKQAELDLSRMRDNASIATKKACAEFAVDSYEMLRSMGAA
DDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRG
EEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAAAKMVKRNVP
FHGQIYGENTYWARDEDLMKQAIVAVNG*
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mRNA from alignment at Contig_35:520057..521112-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7738 ID=mRNA_7738|Name=jgi.p|Trimin1|165055|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1056bp|location=Sequence derived from alignment at Contig_35:520057..521112- (Tribonema minus UTEX_B_3156 )
ATGGACCTCGCAAATGTTACCGCAGCGATCCGGGTGGACACTGCGACCAA
CAAAGGCTCGGTCATCGATGTGATCAAGATTGTGCAATCGTGCAATGCAA
GCGATGCATCCACTTACTGTAAGAGACTGTTGGATGACGTTGGGACACAC
ATTGGGACCCGATGTACCCAACTTCGGATCAACGGAAAGGGAAAACTTAC
CTTCTGTGCCGACGCCAAAACATTGGTCGAAATCGTGTGGTCACTTCCGG
GCAAGGCCGCCCGCGAGTTTCGGCGCACCAGTGCCAAGACGGTGTGCAGG
GTGCTCGGCGGCGACCTCTCGATCGTGCGCGAGGTGGAGGCGCGCCACCA
CGCGCTCCAGAGCACAGGGGGCGGCAGGGCAGCGCAGGACTTCCTGCTTG
GAGACGAGTCGTCAGGCAGCGAGGCCCCGGCCGAGGAGCGGACCCTCGCC
AGGACCATCGGCGAGGTGATGCGCGTTCTGCCGGCGGAGCTGACCCTGGC
CACTGTAGAGGAGAAGAGCGCATACTTCCAGGCGTGGATGAAGAGGAACA
ACAAACAGGCGGAGCTCGATCTGAGCAGGATGAGAGACAATGCTTCGATC
GCCACCAAGAAGGCGTGCGCAGAGTTCGCGGTCGATTCTTACGAAATGCT
GCGCTCCATGGGGGCGGCGGACGACCGCGACCGCATCACCTTCTCCGACG
CCGTGAGGCGCATCGTCGCCGAGGGCGGAGGAGCCGCTGGAGCCATCGTC
GAGGCGGGGGCGGTGCCCGCAGACGACCCTACGGTCCCCACGTCCGACTG
CGACGCCTACTACAGAGGCGAGGAGATCTCGATGCACAGCGTTTCGAGCA
AGTACAGCCTCCGCATCGGGAACGGGCGCGAAGGGGCCGTCGGGCGCGCC
GTGAAGGCGTTGTACTTGAAGAGATACGGCGAAGCGGCAGCCGCCAAGAT
GGTGAAGCGAAACGTTCCTTTCCACGGACAGATATATGGTGAAAACACGT
ACTGGGCGCGCGACGAAGACCTGATGAAACAGGCGATCGTGGCGGTGAAC
GGGTGA
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Coding sequence (CDS) from alignment at Contig_35:520057..521112-

>mRNA_7738 ID=mRNA_7738|Name=jgi.p|Trimin1|165055|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=987bp|location=Sequence derived from alignment at Contig_35:520057..521112- (Tribonema minus UTEX_B_3156 )
ATGGACCTCGCAAATGTTACCGCAGCGATCCGGGTGGACACTGCGACCAA
CAAAGGCTCGGTCATCGATGTGATCAAGATTGTGCAATCGTGCAATGCAA
GCGATGCATCCACTTACTGTAAGAGACTGTTGGATGACGTTGGGACACAC
ATTGGGACCCGATGTACCCAACTTCGGATCAACGGAAAGGGAAAACTTAC
CTTCTGTGCCGACGCCAAAACATTGGTCGAAATCGTGTGGTCACTTCCGG
GCAAGGCCGCCCGCGAGTTTCGGCGCACCAGTGCCAAGACGGTGTGCAGG
GTGCTCGGCGGCGACCTCTCGATCGTGCGCGAGGTGGAGGCGCGCCACCA
CGCGCTCCAGAGCACAGGGGGCGGCAGGGCAGCGCAGGACTTCCTGCTTG
GAGACGAGTCGTCAGGCAGCGAGGCCCCGGCCGAGGAGCGGACCCTCGCC
AGGACCATCGGCGAGGTGATGCGCAGGAACAACAAACAGGCGGAGCTCGA
TCTGAGCAGGATGAGAGACAATGCTTCGATCGCCACCAAGAAGGCGTGCG
CAGAGTTCGCGGTCGATTCTTACGAAATGCTGCGCTCCATGGGGGCGGCG
GACGACCGCGACCGCATCACCTTCTCCGACGCCGTGAGGCGCATCGTCGC
CGAGGGCGGAGGAGCCGCTGGAGCCATCGTCGAGGCGGGGGCGGTGCCCG
CAGACGACCCTACGGTCCCCACGTCCGACTGCGACGCCTACTACAGAGGC
GAGGAGATCTCGATGCACAGCGTTTCGAGCAAGTACAGCCTCCGCATCGG
GAACGGGCGCGAAGGGGCCGTCGGGCGCGCCGTGAAGGCGTTGTACTTGA
AGAGATACGGCGAAGCGGCAGCCGCCAAGATGGTGAAGCGAAACGTTCCT
TTCCACGGACAGATATATGGTGAAAACACGTACTGGGCGCGCGACGAAGA
CCTGATGAAACAGGCGATCGTGGCGGTGAACGGGTGA
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