mRNA_7781 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165041
Unique NamemRNA_7781
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|165041 vs. uniprot
Match: A0A836CDU0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU0_9STRA)

HSP 1 Score: 226 bits (576), Expect = 5.840e-75
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 
Query:    1 VLAHSDADKLRFAAQQSDTGLEILKLFGMEPGELRSIAVLQRSGKLLTQSAAVLEIARRMYQPFPALAEVCSAIPEPARDALYAWVSTQRGVFGHADSCRIPEDEEMARFLTEL 342
            VLAHSDADKLRFAAQQSDTGLEILKLFGMEPGELRSIAVLQRSGKLLTQSAAVLEIARRMYQPFPALAEVCSAIPEPARDALYAWVSTQRGVFGHADSCRIPEDEEMARFLTEL
Sbjct:    1 VLAHSDADKLRFAAQQSDTGLEILKLFGMEPGELRSIAVLQRSGKLLTQSAAVLEIARRMYQPFPALAEVCSAIPEPARDALYAWVSTQRGVFGHADSCRIPEDEEMARFLTEL 114
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BLAST of jgi.p|Trimin1|165041 vs. uniprot
Match: A0A7S2Y137_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y137_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.200e-15
Identity = 44/101 (43.56%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:   31 RFAAQQSDTGLEILKLFGMEPGELRSIAVLQRSGKLLTQSAAVLEIARRMYQPFPALAEVCSAIPEPARDALYAWVSTQRGVFGHADSCRIPEDEEMARFL 333
            RF+A QS+ G  +L   G +  +  SI  L  +     +S AVL+IA  +  PFP LA V   +P+ ARD +Y +VS  R   G  DSCRIPED+ M RFL
Sbjct:  142 RFSAMQSELGECLLHACGKKSDDFSSIVFLDTNHHYYFKSDAVLKIAEGLKMPFPQLASVGKVLPQSARDYIYDFVSEHRTFLGEKDSCRIPEDDVMDRFL 242
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BLAST of jgi.p|Trimin1|165041 vs. uniprot
Match: A0A4D9CNA7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNA7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.260e-15
Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:   31 RFAAQQSDTGLEILKLFGMEPGELRSIAVLQRSGKLLTQSAAVLEIARRMYQPFPALAEVCSAI-PEPARDALYAWVSTQRGVF-GHADSCRIPEDEEMARFLTE 339
            RFA+ Q + G E+L   G++     +I ++ +  ++ T S AVLEIA R+ +PFP LA +   + P   RDALY++VS+ R +  G  DSCRIP + EM RFL +
Sbjct:   69 RFASLQGEIGQELLTANGLDTEHFNTIVLVDKD-EVFTSSDAVLEIADRLKEPFPQLARLAKVLLPHVFRDALYSFVSSNRHLLAGEKDSCRIPSENEMERFLDQ 172
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BLAST of jgi.p|Trimin1|165041 vs. uniprot
Match: A0A7W1X8W5_9BACL (Thiol-disulfide oxidoreductase DCC family protein n=2 Tax=Thermoactinomyces TaxID=2023 RepID=A0A7W1X8W5_9BACL)

HSP 1 Score: 72.4 bits (176), Expect = 7.400e-14
Identity = 47/118 (39.83%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:    1 VLAHSDADKLRFAAQQSDTGLEILKLFGMEPGELRSIAVLQRSGKLLTQSAAVLEIARRM---YQPFPALAEVCSAIPEPARDALYAWVSTQR-GVFGHADSCRIPEDEEMARFLTEL 342
            +L    A   RFA+ QS     +L  +G+EPG L SI +L+ +G+  T+SAAVL I RR+   ++ F  L     AIP P RD LY  V+ +R   FG  +SC +P+ E   RFL + 
Sbjct:   27 LLKKDKAGVFRFASLQSKVACSVLPGYGIEPGALESIVLLE-NGRCYTESAAVLRICRRLKGGWRWFSLL----GAIPRPVRDYLYRQVAKRRYRWFGRTESCMVPDKEMRDRFLEDF 139
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BLAST of jgi.p|Trimin1|165041 vs. uniprot
Match: UPI0017803544 (thiol-disulfide oxidoreductase DCC family protein n=1 Tax=Pseudoxanthomonas sp. PXM02 TaxID=2769294 RepID=UPI0017803544)

HSP 1 Score: 62.0 bits (149), Expect = 7.600e-10
Identity = 38/111 (34.23%), Postives = 57/111 (51.35%), Query Frame = 1 
Query:    1 VLAHSDADKLRFAAQQSDTGLEILKLFGMEPGELRSIAVLQRSGKLLTQSAAVLEIARRMYQPFPALAEVCSAIPEPARDALYAWVSTQRGVFGHADSCRIPEDEEMARFL 333
            +L H    + RFAA QSD G  +L   G++P +  S  ++  + +  T S A+  +   +   +  LA V + +P   RD LY WV+  R  +     CR+P DEE ARFL
Sbjct:   29 LLKHDREGRYRFAAMQSDAGRALLAGHGLDPDDPASFLLVDGT-QAWTDSDAIRRVLTGLGGVWR-LAAVIAVVPRVVRDPLYRWVARNRYRWFGTTECRVPTDEERARFL 137
[Close]
BLAST of jgi.p|Trimin1|165041 vs. uniprot
Match: UPI000781B59D (thiol-disulfide oxidoreductase DCC family protein n=1 Tax=Pseudoxanthomonas mexicana TaxID=128785 RepID=UPI000781B59D)

HSP 1 Score: 59.3 bits (142), Expect = 8.320e-9
Identity = 36/111 (32.43%), Postives = 57/111 (51.35%), Query Frame = 1 
Query:    1 VLAHSDADKLRFAAQQSDTGLEILKLFGMEPGELRSIAVLQRSGKLLTQSAAVLEIARRMYQPFPALAEVCSAIPEPARDALYAWVSTQRGVFGHADSCRIPEDEEMARFL 333
            +L H    + RFAA QSD G  +L + G++P +  S  ++    +  T S A+  +   +   +  LA V + +P   RD LY  ++  R  +    +CR+P DEE ARFL
Sbjct:   29 LLKHDRVGRYRFAAMQSDAGRALLAMHGLDPDDPASFLLVD-GARSWTDSDAIRRVLTGLGGVWR-LAAVIAVVPRFVRDPLYRLIARNRYRWFGTTACRVPTDEERARFL 137
[Close]
BLAST of jgi.p|Trimin1|165041 vs. uniprot
Match: UPI00177BF280 (thiol-disulfide oxidoreductase DCC family protein n=1 Tax=Pseudoxanthomonas sp. PXM03 TaxID=2769284 RepID=UPI00177BF280)

HSP 1 Score: 59.3 bits (142), Expect = 8.490e-9
Identity = 36/111 (32.43%), Postives = 57/111 (51.35%), Query Frame = 1 
Query:    1 VLAHSDADKLRFAAQQSDTGLEILKLFGMEPGELRSIAVLQRSGKLLTQSAAVLEIARRMYQPFPALAEVCSAIPEPARDALYAWVSTQRGVFGHADSCRIPEDEEMARFL 333
            +L H    + RFAA QSD G  +L   G++P +  S  ++    +  T S A+  +   +   +  LA V + +P   RD LY W++  R  +    +CR+P +EE ARFL
Sbjct:   30 LLKHDRVGRYRFAAMQSDAGRALLAGHGLDPDDPASFLLVD-GHRAWTDSDAIQRVLTGLGGVWR-LALVIALVPRGVRDPLYRWIARHRYRWFGMTACRVPTEEERARFL 138
[Close]
BLAST of jgi.p|Trimin1|165041 vs. uniprot
Match: A0A0Q8FHK5_9GAMM (Uncharacterized protein n=2 Tax=unclassified Pseudoxanthomonas TaxID=2645906 RepID=A0A0Q8FHK5_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 1.650e-8
Identity = 36/111 (32.43%), Postives = 57/111 (51.35%), Query Frame = 1 
Query:    1 VLAHSDADKLRFAAQQSDTGLEILKLFGMEPGELRSIAVLQRSGKLLTQSAAVLEIARRMYQPFPALAEVCSAIPEPARDALYAWVSTQRGVFGHADSCRIPEDEEMARFL 333
            +L H  A + RFAA QS +G  +L   G++P +  S  ++  + +  T S A+  +   +   +  LA + + +P   RD LY W++  R        CR+P DEE ARFL
Sbjct:   29 LLKHDRAGRYRFAAMQSASGRALLATHGLDPDDPASFLLVDGT-QAWTDSDAIQRVLTGLGGAWR-LAGMIAWVPRFVRDPLYRWIARHRYRLFGTTECRVPTDEERARFL 137
[Close]
BLAST of jgi.p|Trimin1|165041 vs. uniprot
Match: A0A7V2ZIY3_9BACT (Thiol-disulfide oxidoreductase DCC family protein n=1 Tax=Ignavibacterium album TaxID=591197 RepID=A0A7V2ZIY3_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 2.090e-8
Identity = 35/112 (31.25%), Postives = 56/112 (50.00%), Query Frame = 1 
Query:    1 VLAHSDADKLRFAAQQSDTGLEILKLFGMEPGELRSIAVLQRSGKLLTQSAAVLEIARRMYQPFPALAEVCSAIPEPARDALYAWVSTQR-GVFGHADSCRIPEDEEMARFL 333
            ++   + D   FAA QS  G E+LK F +   E  +  +++         AA+  I  +  + +P +  V   +P+  RD LY  ++  R  +FG  D CRIP +EE A+FL
Sbjct:   22 IIRRDNNDIFNFAALQSKAGQELLKKFKLPTNEFDTFILIEGEVYFTKSDAAI--IISQSLKGWPKILSVGKILPKKFRDLLYDIIAKNRYKIFGKKDYCRIPSEEEKAKFL 131
[Close]
BLAST of jgi.p|Trimin1|165041 vs. uniprot
Match: A0A1G8ZV84_9FLAO (Predicted thiol-disulfide oxidoreductase YuxK, DCC family n=2 Tax=Flavobacterium noncentrifugens TaxID=1128970 RepID=A0A1G8ZV84_9FLAO)

HSP 1 Score: 57.8 bits (138), Expect = 3.390e-8
Identity = 37/112 (33.04%), Postives = 62/112 (55.36%), Query Frame = 1 
Query:    1 VLAHSDADKLRFAAQQSDTGLEILKLFGMEPGELRSIAVLQRSGKLLTQSAAVLEIARRMYQPFPALAEVCSAIPEPARDALYAWVSTQRGV-FGHADSCRIPEDEEMARFL 333
            V+ H   D+ RFAA QSD G++ILK   ++P  + SI + +       +S+A +EIA+ +   F +L+     IP   R+ +Y +++  R   +G  +SC IP  E  ++FL
Sbjct:   29 VIKHDLKDQFRFAALQSDIGMQILKHIAIDPKNIDSIILYEPGIAYYYKSSAAIEIAKGLGG-FWSLSTAFKIIPTFLRNPVYDFIARNRYKWYGKQESCMIPTPELKSKFL 139
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165041 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A836CDU0_9STRA5.840e-75100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2Y137_9STRA1.200e-1543.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9CNA7_9STRA1.260e-1541.90Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7W1X8W5_9BACL7.400e-1439.83Thiol-disulfide oxidoreductase DCC family protein ... [more]
UPI00178035447.600e-1034.23thiol-disulfide oxidoreductase DCC family protein ... [more]
UPI000781B59D8.320e-932.43thiol-disulfide oxidoreductase DCC family protein ... [more]
UPI00177BF2808.490e-932.43thiol-disulfide oxidoreductase DCC family protein ... [more]
A0A0Q8FHK5_9GAMM1.650e-832.43Uncharacterized protein n=2 Tax=unclassified Pseud... [more]
A0A7V2ZIY3_9BACT2.090e-831.25Thiol-disulfide oxidoreductase DCC family protein ... [more]
A0A1G8ZV84_9FLAO3.390e-833.04Predicted thiol-disulfide oxidoreductase YuxK, DCC... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_35contigContig_35:880654..881655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165041|e_gw1.35.134.1
Preferred nameyuxK
DescriptionProtein of unknown function, DUF393
COG categoryS
Max annot lvl976|Bacteroidetes
EggNOG OGsCOG3011@1|root,COG3011@2|Bacteria,4NQ93@976|Bacteroidetes,1FK8C@1100069|Bacteroidetes Order II. Incertae sedis
Evalue3.88e-19
Seed ortholog1089550.ATTH01000001_gene1300
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF393
Ec32 orthologEc-06_002200.1
TranscriptId165363
TrackFilteredModels1
ProteinId165041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165041gene_7781Tribonema minus UTEX_B_3156 geneContig_35 880654..881655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165041Trimin1|165041|e_gw1.35.134.1Tribonema minus UTEX_B_3156 polypeptideContig_35 880654..881655 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7781_2exon_7781_2Tribonema minus UTEX_B_3156 exonContig_35 880654..880791 -
exon_7781_1exon_7781_1Tribonema minus UTEX_B_3156 exonContig_35 881449..881655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7781CDS_7781Tribonema minus UTEX_B_3156 CDSContig_35 881449..881655 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7781 ID=mRNA_7781|Name=jgi.p|Trimin1|165041|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=345bp|location=Sequence derived from alignment at Contig_35:880654..881655- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGCTGGCGCACAGCGACGCCGACAAGCTGAGGTTCGCTGCGCAGCAGAG
CGACACCGGCCTGGAAATACTCAAGCTCTTTGGGATGGAGCCCGGAGAGT
TGCGCAGCATCGCCGTGCTGCAGAGGAGCGGCAAGTTGCTCACTCAGTCA
GCGGCCGTCTTGGAGATAGCGCGGCGCATGTACCAGCCCTTTCCGGCTCT
TGCAGAGGTCTGCAGCGCCATCCCGGAGCCCGCGCGCGATGCGCTGTATG
CGTGGGTCAGCACGCAGCGCGGCGTGTTCGGCCACGCGGACAGCTGCCGC
ATCCCGGAGGACGAGGAGATGGCGCGCTTCCTCACGGAACTGTAA
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protein sequence of jgi.p|Trimin1|165041

>Trimin1|165041|e_gw1.35.134.1 ID=Trimin1|165041|e_gw1.35.134.1|Name=jgi.p|Trimin1|165041|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=115bp
VLAHSDADKLRFAAQQSDTGLEILKLFGMEPGELRSIAVLQRSGKLLTQS
AAVLEIARRMYQPFPALAEVCSAIPEPARDALYAWVSTQRGVFGHADSCR
IPEDEEMARFLTEL*
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mRNA from alignment at Contig_35:880654..881655-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7781 ID=mRNA_7781|Name=jgi.p|Trimin1|165041|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1002bp|location=Sequence derived from alignment at Contig_35:880654..881655- (Tribonema minus UTEX_B_3156 )
GTGCTGGCGCACAGCGACGCCGACAAGCTGAGGTTCGCTGCGCAGCAGAG
CGACACCGGCCTGGAAATACTCAAGCTCTTTGGGATGGAGCCCGGAGAGT
TGCGCAGCATCGCCGTGCTGCAGAGGAGCGGCAAGTTGCTCACTCAGTCA
GCGGCCGTCTTGGAGATAGCGCGGCGCATGTACCAGCCCTTTCCGGCTCT
TGCAGAGGTGCGTCGTCTGGTCTGCTTGCAGCAAGTGCACAGCGATCGTC
TGTGTTGTTGGTGCTTGTTCGGAATCAATGGACAACCGTACAGCCAGAGC
AGTGACAGCGCTGATGCAGCATGGCAGCGCGCCACAATAGCCTCTCTTCT
GTGCGGTGCACGCACGCTGGTGGGCTTGCAAGTTGCTCGGCGCTGCACAT
CCTGGTCTGAAGGGTTGTTGACGTTGAGCAATCCACCACTGCATTGAGTT
CACACTGTTTTTGAGTTCATACAGCCAGGTAGTTGCCCTCGCTGCGAGCG
CGTAGCCCTGATGGCAGGCACATGCAGAACGCCACCACCATCATCCGATC
AGAAAAATGATCTTGCTCTGGCGCTGGAGTGCCGAAGCTTATGCTGATGA
CGGCACTTGTCATCGCAGCCCAACCCTACCTTCAGAATCTACATCTGGCG
CTGTTTGATCGAAGGCCGCATGCGGCGTGCGGTCGCAGGCTTCCAACAAT
CGCCAAGGTCATGGGCGCGTGAACTTCAACTCAAACTCGTTCAACTCAAA
GTCCTCACGTAGCAGCTGCTGAATCCTTTGCTCGCAACACCCCATCGATC
GGCCGCAAGCGCAAAACTCAAAATTCTTAGCAGCTGATCCTTTCTGCGAC
CCCCATGGCCGCAGGTCTGCAGCGCCATCCCGGAGCCCGCGCGCGATGCG
CTGTATGCGTGGGTCAGCACGCAGCGCGGCGTGTTCGGCCACGCGGACAG
CTGCCGCATCCCGGAGGACGAGGAGATGGCGCGCTTCCTCACGGAACTGT
AA
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Coding sequence (CDS) from alignment at Contig_35:880654..881655-

>mRNA_7781 ID=mRNA_7781|Name=jgi.p|Trimin1|165041|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=345bp|location=Sequence derived from alignment at Contig_35:880654..881655- (Tribonema minus UTEX_B_3156 )
GTGCTGGCGCACAGCGACGCCGACAAGCTGAGGTTCGCTGCGCAGCAGAG
CGACACCGGCCTGGAAATACTCAAGCTCTTTGGGATGGAGCCCGGAGAGT
TGCGCAGCATCGCCGTGCTGCAGAGGAGCGGCAAGTTGCTCACTCAGTCA
GCGGCCGTCTTGGAGATAGCGCGGCGCATGTACCAGCCCTTTCCGGCTCT
TGCAGAGGTCTGCAGCGCCATCCCGGAGCCCGCGCGCGATGCGCTGTATG
CGTGGGTCAGCACGCAGCGCGGCGTGTTCGGCCACGCGGACAGCTGCCGC
ATCCCGGAGGACGAGGAGATGGCGCGCTTCCTCACGGAACTGTAA
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