mRNA_18373 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Match: A0A835Z2U7_9STRA (NUDIX hydrolase domain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U7_9STRA) HSP 1 Score: 262 bits (669), Expect = 1.290e-88 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1 Query: 1 RSRRPAVRRHLASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDLDRIGVIDRPGVKLADDARDVGWKDFAEILSLDTYADHEQIVAQA 393 RSRRPAVRRHLASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDLDRIGVIDRPGVKLADDARDVGWKDFAEILSLDTYADHEQIVAQA Sbjct: 1 RSRRPAVRRHLASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDLDRIGVIDRPGVKLADDARDVGWKDFAEILSLDTYADHEQIVAQA 131
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Match: A0A1F4KHE5_9BURK (Nudix hydrolase domain-containing protein n=1 Tax=Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 TaxID=1797566 RepID=A0A1F4KHE5_9BURK) HSP 1 Score: 65.5 bits (158), Expect = 6.520e-10 Identity = 48/119 (40.34%), Postives = 59/119 (49.58%), Query Frame = 1 Query: 34 ASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDLDRIGVIDRPGVKLADDARDVGWKDFAEILSLDT--YADHEQIV 384 A PGGFVDK ER Y ALREL EET F+ LD +RH A S + P R PR + T F FDL G + P V+ ADDA + W E+ L+ + DH I+ Sbjct: 234 AIPGGFVDKNERFYTAALRELHEETGFKT---------LDSTMRH---ALQASQVFDHPLRSPRGRLVTHAFYFDL---GPVRLPEVRGADDALEAKWVPLEELPQLEAQLFEDHAAIL 337
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Match: UPI001ADEE150 (NUDIX domain-containing protein n=1 Tax=Rhodoferax sp. AJA081-3 TaxID=2752316 RepID=UPI001ADEE150) HSP 1 Score: 65.5 bits (158), Expect = 6.610e-10 Identity = 47/119 (39.50%), Postives = 58/119 (48.74%), Query Frame = 1 Query: 34 ASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDLDRIGVIDRPGVKLADDARDVGWKDFAEILSLDT--YADHEQIV 384 A PGGFVDKGER Y ALREL EET F+ LD +RH A S + P R R + T F FDL G + P +K ADDA + W + L+ + DH I+ Sbjct: 235 ALPGGFVDKGERFYTAALRELYEETGFKT---------LDSTMRH---ALKASQVFDHPLRSARGRLITNAFYFDL---GAVRLPEIKGADDALEAKWIPLDSLAGLEDQLFEDHAAIL 338
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Match: A0A109E4D7_9BURK (Nudix hydrolase domain-containing protein n=1 Tax=Burkholderia cenocepacia TaxID=95486 RepID=A0A109E4D7_9BURK) HSP 1 Score: 56.6 bits (135), Expect = 9.040e-7 Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 1 Query: 34 ASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDLDRIGVIDRPGVKLADDA 312 A PGGFV+K ER Y A+REL EET F + G DG+ H+ +++V + P+R RAHI + FVFDL +P V+ DDA Sbjct: 252 ALPGGFVEKNERFYDAAIRELKEETGFSM-------FG-DGLRAHLVKSHVF----DDPNRSLRAHIVSHMFVFDLGERSA--QPDVQAKDDA 330
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Match: A0A523VLX9_9ARCH (NUDIX hydrolase (Fragment) n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A523VLX9_9ARCH) HSP 1 Score: 53.1 bits (126), Expect = 1.600e-5 Identity = 38/127 (29.92%), Postives = 64/127 (50.39%), Query Frame = 1 Query: 13 PAVRRHLASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDLDRIGVIDRPGVKLADDARDVGWKDFAEILSLDTYADHEQIVAQA 393 P + A PGGF++ GE+P T LRE+ EET+ + +IIG +G F +EG RDPR I++T + +D D ++ DD+++V + L+ DH++I+ ++ Sbjct: 442 PPFQGFYALPGGFIETGEKPQQTLLREVKEETNLNV-----KIIG-----------KIGIFDEEG--RDPRGTIHSTAYKCLVD-----DTSNMRNGDDSKEVELISKERLKDLELAFDHKKIIKES 545
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Match: A0A848H1Y8_9BURK (Bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase n=1 Tax=Ramlibacter agri TaxID=2728837 RepID=A0A848H1Y8_9BURK) HSP 1 Score: 52.4 bits (124), Expect = 2.680e-5 Identity = 39/121 (32.23%), Postives = 60/121 (49.59%), Query Frame = 1 Query: 31 LASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDL-DRIGVIDRPGVKLADDARDVGWKDFAEILSLDT--YADHEQIV 384 LA PGGF+++ E Y +A+REL EET FRL + +E A + + PDR R + T FDL +R+ P + +DDA + W A++ S++ + DH I+ Sbjct: 232 LALPGGFLEQRETVYQSAVRELEEETGFRL------------LPSEMEHALKAARVFDHPDRSQRGRVITHAHYFDLGERLA----PEIAGSDDAAEARWVKIADLPSMEDQFHDDHFHIL 336
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Match: A0A524DMB6_9ARCH (NUDIX hydrolase n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A524DMB6_9ARCH) HSP 1 Score: 50.1 bits (118), Expect = 4.730e-5 Identity = 38/132 (28.79%), Postives = 63/132 (47.73%), Query Frame = 1 Query: 1 RSRRPAVRRHLASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFD-LDRIGVIDRPGVKLADDARDVGWKDFAEILSLDTYADHEQIVAQA 393 R + P + LA PGGF+D GE P T +RE+ EET+ + + + +G+F + DRDPR H+ T F+ + L++ K DDA + E+ S + DH++I+ ++ Sbjct: 26 RRKNPPFKGKLALPGGFMDTGELPEQTCIREVKEETNLDVKIIKK----------------IGTFSDK--DRDPRGHVITIAFLCEPLNKT-----QDAKAQDDAASLEIVPLDELHSKEFAFDHKKIIEKS 134
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Match: UPI001BEAB051 (NUDIX domain-containing protein n=1 Tax=Variovorax paradoxus TaxID=34073 RepID=UPI001BEAB051) HSP 1 Score: 50.8 bits (120), Expect = 9.140e-5 Identity = 45/130 (34.62%), Postives = 63/130 (48.46%), Query Frame = 1 Query: 1 RSRRPAVRRHLASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDLDRIGVIDRPGVKLADDARDVGWKDFAEILSLDT--YADHEQIV 384 R R P R LA PGGF+++ E Y +A+REL EET FRL R LR + R + + PDR R + T F L G P V+ +DDA + W +E+ ++T + DH I+ Sbjct: 202 RGRAPGKGR-LALPGGFLEQRETVYQSAVRELEEETGFRLLPSTMR-----AALREV-RVF------DHPDRSQRGRVITHAHYFAL---GDGPLPEVRGSDDASEAMWVPQSELAGMETQFHDDHFYIL 315 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18373 ID=mRNA_18373|Name=jgi.p|Trimin1|150044|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_348:9487..9879- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGTTCGCGACGACCCGCCGTTCGCCGGCACCTGGCAAGCCCCGGCGGTTTback to top protein sequence of jgi.p|Trimin1|150044 >Trimin1|150044|gw1.348.5.1 ID=Trimin1|150044|gw1.348.5.1|Name=jgi.p|Trimin1|150044|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=131bp RSRRPAVRRHLASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLback to top mRNA from alignment at Contig_348:9487..9879- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18373 ID=mRNA_18373|Name=jgi.p|Trimin1|150044|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_348:9487..9879- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_348:9487..9879- >mRNA_18373 ID=mRNA_18373|Name=jgi.p|Trimin1|150044|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=393bp|location=Sequence derived from alignment at Contig_348:9487..9879- (Tribonema minus UTEX_B_3156 )back to top |