mRNA_18373 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150044
Unique NamemRNA_18373
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Match: A0A835Z2U7_9STRA (NUDIX hydrolase domain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U7_9STRA)

HSP 1 Score: 262 bits (669), Expect = 1.290e-88
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1
Query:    1 RSRRPAVRRHLASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDLDRIGVIDRPGVKLADDARDVGWKDFAEILSLDTYADHEQIVAQA 393
            RSRRPAVRRHLASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDLDRIGVIDRPGVKLADDARDVGWKDFAEILSLDTYADHEQIVAQA
Sbjct:    1 RSRRPAVRRHLASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDLDRIGVIDRPGVKLADDARDVGWKDFAEILSLDTYADHEQIVAQA 131          
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Match: A0A1F4KHE5_9BURK (Nudix hydrolase domain-containing protein n=1 Tax=Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 TaxID=1797566 RepID=A0A1F4KHE5_9BURK)

HSP 1 Score: 65.5 bits (158), Expect = 6.520e-10
Identity = 48/119 (40.34%), Postives = 59/119 (49.58%), Query Frame = 1
Query:   34 ASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDLDRIGVIDRPGVKLADDARDVGWKDFAEILSLDT--YADHEQIV 384
            A PGGFVDK ER Y  ALREL EET F+          LD  +RH   A   S   + P R PR  + T  F FDL   G +  P V+ ADDA +  W    E+  L+   + DH  I+
Sbjct:  234 AIPGGFVDKNERFYTAALRELHEETGFKT---------LDSTMRH---ALQASQVFDHPLRSPRGRLVTHAFYFDL---GPVRLPEVRGADDALEAKWVPLEELPQLEAQLFEDHAAIL 337          
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Match: UPI001ADEE150 (NUDIX domain-containing protein n=1 Tax=Rhodoferax sp. AJA081-3 TaxID=2752316 RepID=UPI001ADEE150)

HSP 1 Score: 65.5 bits (158), Expect = 6.610e-10
Identity = 47/119 (39.50%), Postives = 58/119 (48.74%), Query Frame = 1
Query:   34 ASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDLDRIGVIDRPGVKLADDARDVGWKDFAEILSLDT--YADHEQIV 384
            A PGGFVDKGER Y  ALREL EET F+          LD  +RH   A   S   + P R  R  + T  F FDL   G +  P +K ADDA +  W     +  L+   + DH  I+
Sbjct:  235 ALPGGFVDKGERFYTAALRELYEETGFKT---------LDSTMRH---ALKASQVFDHPLRSARGRLITNAFYFDL---GAVRLPEIKGADDALEAKWIPLDSLAGLEDQLFEDHAAIL 338          
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Match: A0A109E4D7_9BURK (Nudix hydrolase domain-containing protein n=1 Tax=Burkholderia cenocepacia TaxID=95486 RepID=A0A109E4D7_9BURK)

HSP 1 Score: 56.6 bits (135), Expect = 9.040e-7
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 1
Query:   34 ASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDLDRIGVIDRPGVKLADDA 312
            A PGGFV+K ER Y  A+REL EET F +        G DG+  H+ +++V     + P+R  RAHI +  FVFDL       +P V+  DDA
Sbjct:  252 ALPGGFVEKNERFYDAAIRELKEETGFSM-------FG-DGLRAHLVKSHVF----DDPNRSLRAHIVSHMFVFDLGERSA--QPDVQAKDDA 330          
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Match: A0A523VLX9_9ARCH (NUDIX hydrolase (Fragment) n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A523VLX9_9ARCH)

HSP 1 Score: 53.1 bits (126), Expect = 1.600e-5
Identity = 38/127 (29.92%), Postives = 64/127 (50.39%), Query Frame = 1
Query:   13 PAVRRHLASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDLDRIGVIDRPGVKLADDARDVGWKDFAEILSLDTYADHEQIVAQA 393
            P  +   A PGGF++ GE+P  T LRE+ EET+  +     +IIG            +G F +EG  RDPR  I++T +   +D     D   ++  DD+++V       +  L+   DH++I+ ++
Sbjct:  442 PPFQGFYALPGGFIETGEKPQQTLLREVKEETNLNV-----KIIG-----------KIGIFDEEG--RDPRGTIHSTAYKCLVD-----DTSNMRNGDDSKEVELISKERLKDLELAFDHKKIIKES 545          
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Match: A0A848H1Y8_9BURK (Bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase n=1 Tax=Ramlibacter agri TaxID=2728837 RepID=A0A848H1Y8_9BURK)

HSP 1 Score: 52.4 bits (124), Expect = 2.680e-5
Identity = 39/121 (32.23%), Postives = 60/121 (49.59%), Query Frame = 1
Query:   31 LASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDL-DRIGVIDRPGVKLADDARDVGWKDFAEILSLDT--YADHEQIV 384
            LA PGGF+++ E  Y +A+REL EET FRL            +   +E A   +   + PDR  R  + T    FDL +R+     P +  +DDA +  W   A++ S++   + DH  I+
Sbjct:  232 LALPGGFLEQRETVYQSAVRELEEETGFRL------------LPSEMEHALKAARVFDHPDRSQRGRVITHAHYFDLGERLA----PEIAGSDDAAEARWVKIADLPSMEDQFHDDHFHIL 336          
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Match: A0A524DMB6_9ARCH (NUDIX hydrolase n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A524DMB6_9ARCH)

HSP 1 Score: 50.1 bits (118), Expect = 4.730e-5
Identity = 38/132 (28.79%), Postives = 63/132 (47.73%), Query Frame = 1
Query:    1 RSRRPAVRRHLASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFD-LDRIGVIDRPGVKLADDARDVGWKDFAEILSLDTYADHEQIVAQA 393
            R + P  +  LA PGGF+D GE P  T +RE+ EET+  + + +                 +G+F  +  DRDPR H+ T  F+ + L++         K  DDA  +      E+ S +   DH++I+ ++
Sbjct:   26 RRKNPPFKGKLALPGGFMDTGELPEQTCIREVKEETNLDVKIIKK----------------IGTFSDK--DRDPRGHVITIAFLCEPLNKT-----QDAKAQDDAASLEIVPLDELHSKEFAFDHKKIIEKS 134          
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Match: UPI001BEAB051 (NUDIX domain-containing protein n=1 Tax=Variovorax paradoxus TaxID=34073 RepID=UPI001BEAB051)

HSP 1 Score: 50.8 bits (120), Expect = 9.140e-5
Identity = 45/130 (34.62%), Postives = 63/130 (48.46%), Query Frame = 1
Query:    1 RSRRPAVRRHLASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGLDGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDLDRIGVIDRPGVKLADDARDVGWKDFAEILSLDT--YADHEQIV 384
            R R P   R LA PGGF+++ E  Y +A+REL EET FRL     R       LR + R +      + PDR  R  + T    F L   G    P V+ +DDA +  W   +E+  ++T  + DH  I+
Sbjct:  202 RGRAPGKGR-LALPGGFLEQRETVYQSAVRELEEETGFRLLPSTMR-----AALREV-RVF------DHPDRSQRGRVITHAHYFAL---GDGPLPEVRGSDDASEAMWVPQSELAGMETQFHDDHFYIL 315          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150044 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835Z2U7_9STRA1.290e-88100.00NUDIX hydrolase domain-like protein (Fragment) n=1... [more]
A0A1F4KHE5_9BURK6.520e-1040.34Nudix hydrolase domain-containing protein n=1 Tax=... [more]
UPI001ADEE1506.610e-1039.50NUDIX domain-containing protein n=1 Tax=Rhodoferax... [more]
A0A109E4D7_9BURK9.040e-741.94Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A523VLX9_9ARCH1.600e-529.92NUDIX hydrolase (Fragment) n=1 Tax=Candidatus Loki... [more]
A0A848H1Y8_9BURK2.680e-532.23Bifunctional nicotinamide-nucleotide adenylyltrans... [more]
A0A524DMB6_9ARCH4.730e-528.79NUDIX hydrolase n=1 Tax=Candidatus Lokiarchaeota a... [more]
UPI001BEAB0519.140e-534.62NUDIX domain-containing protein n=1 Tax=Variovorax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_348contigContig_348:9487..9879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150044|gw1.348.5.1
BRITEko00000,ko00001,ko01000
KEGG rclassRC00002
KEGG ReactionR00137,R03005
KEGG Pathwayko00760,ko01100,map00760,map01100
KEGG koko:K13522
EC2.7.7.1
DescriptionPFAM NUDIX hydrolase
COG categoryFH
Max annot lvl28216|Betaproteobacteria
EggNOG OGsCOG1051@1|root,COG1056@1|root,COG1051@2|Bacteria,COG1056@2|Bacteria,1MWNH@1224|Proteobacteria,2VMGH@28216|Betaproteobacteria,4ACI4@80864|Comamonadaceae
Evalue9.44e-07
Seed ortholog365044.Pnap_3717
Hectar predicted targeting categoryother localisation
TranscriptId150366
TrackFilteredModels1
ProteinId150044
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150044gene_18373Tribonema minus UTEX_B_3156 geneContig_348 9487..9879 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18373_1exon_18373_1Tribonema minus UTEX_B_3156 exonContig_348 9487..9879 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18373CDS_18373Tribonema minus UTEX_B_3156 CDSContig_348 9487..9879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150044Trimin1|150044|gw1.348.5.1Tribonema minus UTEX_B_3156 polypeptideContig_348 9487..9879 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18373 ID=mRNA_18373|Name=jgi.p|Trimin1|150044|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_348:9487..9879- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGTTCGCGACGACCCGCCGTTCGCCGGCACCTGGCAAGCCCCGGCGGTTT
TGTCGATAAGGGCGAGCGGCCATACATGACCGCGCTTCGCGAGCTCGTGG
AAGAAACCAGTTTTCGGCTTACGGTGGGACGGACCAGGATCATCGGCCTT
GATGGAATCCTACGCCACATTGAGCGCGCATATGTTGGCTCGTTCCGGAA
GGAGGGGCCGGATCGCGACCCACGCGCCCATATCAACACGACCACCTTCG
TCTTTGATCTCGATCGGATCGGCGTCATCGACCGGCCAGGGGTGAAGCTG
GCAGACGACGCTCGCGACGTCGGGTGGAAGGATTTCGCGGAGATCCTGAG
CCTCGATACCTACGCCGATCATGAACAGATCGTCGCGCAAGCC
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protein sequence of jgi.p|Trimin1|150044

>Trimin1|150044|gw1.348.5.1 ID=Trimin1|150044|gw1.348.5.1|Name=jgi.p|Trimin1|150044|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=131bp
RSRRPAVRRHLASPGGFVDKGERPYMTALRELVEETSFRLTVGRTRIIGL
DGILRHIERAYVGSFRKEGPDRDPRAHINTTTFVFDLDRIGVIDRPGVKL
ADDARDVGWKDFAEILSLDTYADHEQIVAQA
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mRNA from alignment at Contig_348:9487..9879-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18373 ID=mRNA_18373|Name=jgi.p|Trimin1|150044|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_348:9487..9879- (Tribonema minus UTEX_B_3156 )
CGTTCGCGACGACCCGCCGTTCGCCGGCACCTGGCAAGCCCCGGCGGTTT TGTCGATAAGGGCGAGCGGCCATACATGACCGCGCTTCGCGAGCTCGTGG AAGAAACCAGTTTTCGGCTTACGGTGGGACGGACCAGGATCATCGGCCTT GATGGAATCCTACGCCACATTGAGCGCGCATATGTTGGCTCGTTCCGGAA GGAGGGGCCGGATCGCGACCCACGCGCCCATATCAACACGACCACCTTCG TCTTTGATCTCGATCGGATCGGCGTCATCGACCGGCCAGGGGTGAAGCTG GCAGACGACGCTCGCGACGTCGGGTGGAAGGATTTCGCGGAGATCCTGAG CCTCGATACCTACGCCGATCATGAACAGATCGTCGCGCAAGCC
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Coding sequence (CDS) from alignment at Contig_348:9487..9879-

>mRNA_18373 ID=mRNA_18373|Name=jgi.p|Trimin1|150044|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=393bp|location=Sequence derived from alignment at Contig_348:9487..9879- (Tribonema minus UTEX_B_3156 )
CGTTCGCGACGACCCGCCGTTCGCCGGCACCTGGCAAGCCCCGGCGGTTT
TGTCGATAAGGGCGAGCGGCCATACATGACCGCGCTTCGCGAGCTCGTGG
AAGAAACCAGTTTTCGGCTTACGGTGGGACGGACCAGGATCATCGGCCTT
GATGGAATCCTACGCCACATTGAGCGCGCATATGTTGGCTCGTTCCGGAA
GGAGGGGCCGGATCGCGACCCACGCGCCCATATCAACACGACCACCTTCG
TCTTTGATCTCGATCGGATCGGCGTCATCGACCGGCCAGGGGTGAAGCTG
GCAGACGACGCTCGCGACGTCGGGTGGAAGGATTTCGCGGAGATCCTGAG
CCTCGATACCTACGCCGATCATGAACAGATCGTCGCGCAAGCC
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