Trimin1|349041|estExt_Genemark1.C_Ctg_340097 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|349041
Unique Name	Trimin1\|349041\|estExt_Genemark1.C_Ctg_340097
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	874

Homology

[Close]

BLAST of jgi.p|Trimin1|349041 vs. uniprot
Match: A0A835Z313_9STRA (TFIIS N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z313_9STRA)

HSP 1 Score: 1320 bits (3416), Expect = 0.000e+0
Identity = 873/873 (100.00%), Postives = 873/873 (100.00%), Query Frame = 0

Query:    1 MAGVGGGPALAGLEGAQAKASPVPFGVFVKETFMCISDAADNGRIELVLAALEAVKDLPVTEEAVRGSEIGKTIKKLKRGGSTGKARRAPDPEVSRMVDEIIMAWTKTLEAQREERARMGDEDGEWRRGSLGWKEEIRLGYSVSDKGGDTSGSEAGGGDYMNRHLSDTMSSAGEQWHRGHDVLDELLTGSGYKAVDETDECGRPSGMAPPFLHVGDALADRDGSASASSSMTGAVTADTASSLGTLDMGSDSSRHRRRSPARRGQYSDXXXXXXXXXXXXXXXXXXXAWDRGSGALGGFASPLAMLPRQRRGALGRGVLWGSGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLGVLSLLRSHLEGGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRDSEYQYTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGSLRPPRGRGGEDDSSFGEGSAGSGGSDASRSSLKAKVGPPRSPRFSPYAPPDHYGTGWDSSGSTSSAGPLPTIESFSSALDRSMRVGARRGGGTVKRVTWADRGGGVLRQIRLFTSVEVSCDHCCRALLRFVPCVRVWAIMGAAACCAGVRLGGLCCRLSAASAARFVCLYGGSGVLRQIRLFTSTEAEHERALDQQAPGEAWQDLARREREHEREMLRREREEAARARACENLRRREMLRRMVPSVVWHRPAPLLSEQSHVAPHPXXXXAEQPVKPLSKEAAAQVARTRRMMETLYLNVGDIPPSPAEPEYCEHSAAGGGKHPHRPTAIFPFEVPAAQMEAQQRLGKCAPPGLTRARGGAARTSTFALDSRAGHMEPRATR 873
            MAGVGGGPALAGLEGAQAKASPVPFGVFVKETFMCISDAADNGRIELVLAALEAVKDLPVTEEAVRGSEIGKTIKKLKRGGSTGKARRAPDPEVSRMVDEIIMAWTKTLEAQREERARMGDEDGEWRRGSLGWKEEIRLGYSVSDKGGDTSGSEAGGGDYMNRHLSDTMSSAGEQWHRGHDVLDELLTGSGYKAVDETDECGRPSGMAPPFLHVGDALADRDGSASASSSMTGAVTADTASSLGTLDMGSDSSRHRRRSPARRGQYSDXXXXXXXXXXXXXXXXXXXAWDRGSGALGGFASPLAMLPRQRRGALGRGVLWGSGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLGVLSLLRSHLEGGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRDSEYQYTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGSLRPPRGRGGEDDSSFGEGSAGSGGSDASRSSLKAKVGPPRSPRFSPYAPPDHYGTGWDSSGSTSSAGPLPTIESFSSALDRSMRVGARRGGGTVKRVTWADRGGGVLRQIRLFTSVEVSCDHCCRALLRFVPCVRVWAIMGAAACCAGVRLGGLCCRLSAASAARFVCLYGGSGVLRQIRLFTSTEAEHERALDQQAPGEAWQDLARREREHEREMLRREREEAARARACENLRRREMLRRMVPSVVWHRPAPLLSEQSHVAPHPXXXXAEQPVKPLSKEAAAQVARTRRMMETLYLNVGDIPPSPAEPEYCEHSAAGGGKHPHRPTAIFPFEVPAAQMEAQQRLGKCAPPGLTRARGGAARTSTFALDSRAGHMEPRATR
Sbjct:    1 MAGVGGGPALAGLEGAQAKASPVPFGVFVKETFMCISDAADNGRIELVLAALEAVKDLPVTEEAVRGSEIGKTIKKLKRGGSTGKARRAPDPEVSRMVDEIIMAWTKTLEAQREERARMGDEDGEWRRGSLGWKEEIRLGYSVSDKGGDTSGSEAGGGDYMNRHLSDTMSSAGEQWHRGHDVLDELLTGSGYKAVDETDECGRPSGMAPPFLHVGDALADRDGSASASSSMTGAVTADTASSLGTLDMGSDSSRHRRRSPARRGQYSDXXXXXXXXXXXXXXXXXXXAWDRGSGALGGFASPLAMLPRQRRGALGRGVLWGSGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLGVLSLLRSHLEGGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRDSEYQYTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGSLRPPRGRGGEDDSSFGEGSAGSGGSDASRSSLKAKVGPPRSPRFSPYAPPDHYGTGWDSSGSTSSAGPLPTIESFSSALDRSMRVGARRGGGTVKRVTWADRGGGVLRQIRLFTSVEVSCDHCCRALLRFVPCVRVWAIMGAAACCAGVRLGGLCCRLSAASAARFVCLYGGSGVLRQIRLFTSTEAEHERALDQQAPGEAWQDLARREREHEREMLRREREEAARARACENLRRREMLRRMVPSVVWHRPAPLLSEQSHVAPHPXXXXAEQPVKPLSKEAAAQVARTRRMMETLYLNVGDIPPSPAEPEYCEHSAAGGGKHPHRPTAIFPFEVPAAQMEAQQRLGKCAPPGLTRARGGAARTSTFALDSRAGHMEPRATR 873

[Close]

BLAST of jgi.p|Trimin1|349041 vs. uniprot
Match: A0A835Z9F1_9STRA (TFIIS N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9F1_9STRA)

HSP 1 Score: 701 bits (1810), Expect = 3.500e-242
Identity = 548/549 (99.82%), Postives = 548/549 (99.82%), Query Frame = 0

Query:   36 ISDAADNGRIELVLAALEAVKDLPVTEEAVRGSEIGKTIKKLKRGGSTGKARRAPDPEVSRMVDEIIMAWTKTLEAQREERARMGDEDGEWRRGSLGWKEEIRLGYSVSDKGGDTSGSEAGGGDYMNRHLSDTMSSAGEQWHRGHDVLDELLTGSGYKAVDETDECGRPSGMAPPFLHVGDALADRDGSASASSSMTGAVTADTASSLGTLDMGSDSSRHRRRSPARRGQYSDXXXXXXXXXXXXXXXXXXXAWDRGSGALGGFASPLAMLPRQRRGALGRGVLWGSGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLGVLSLLRSHLEGGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRDSEYQYTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGSLRPPRGRGGEDDSSFGEGSAGSGGSDASRSSLKAKVGPPRSPRFSPYAPPDHYGTGWDSSGSTSSAGPLPTIESFSSALDRSMRVGARRGGG 584
            I DAADNGRIELVLAALEAVKDLPVTEEAVRGSEIGKTIKKLKRGGSTGKARRAPDPEVSRMVDEIIMAWTKTLEAQREERARMGDEDGEWRRGSLGWKEEIRLGYSVSDKGGDTSGSEAGGGDYMNRHLSDTMSSAGEQWHRGHDVLDELLTGSGYKAVDETDECGRPSGMAPPFLHVGDALADRDGSASASSSMTGAVTADTASSLGTLDMGSDSSRHRRRSPARRGQYSDXXXXXXXXXXXXXXXXXXXAWDRGSGALGGFASPLAMLPRQRRGALGRGVLWGSGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLGVLSLLRSHLEGGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRDSEYQYTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGSLRPPRGRGGEDDSSFGEGSAGSGGSDASRSSLKAKVGPPRSPRFSPYAPPDHYGTGWDSSGSTSSAGPLPTIESFSSALDRSMRVGARRGGG
Sbjct:   94 IKDAADNGRIELVLAALEAVKDLPVTEEAVRGSEIGKTIKKLKRGGSTGKARRAPDPEVSRMVDEIIMAWTKTLEAQREERARMGDEDGEWRRGSLGWKEEIRLGYSVSDKGGDTSGSEAGGGDYMNRHLSDTMSSAGEQWHRGHDVLDELLTGSGYKAVDETDECGRPSGMAPPFLHVGDALADRDGSASASSSMTGAVTADTASSLGTLDMGSDSSRHRRRSPARRGQYSDXXXXXXXXXXXXXXXXXXXAWDRGSGALGGFASPLAMLPRQRRGALGRGVLWGSGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLGVLSLLRSHLEGGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRDSEYQYTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGSLRPPRGRGGEDDSSFGEGSAGSGGSDASRSSLKAKVGPPRSPRFSPYAPPDHYGTGWDSSGSTSSAGPLPTIESFSSALDRSMRVGARRGGG 642

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349041 vs. uniprot

BLAST of jgi.p|Trimin1|349041 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835Z313_9STRA	0.000e+0	100.00	TFIIS N-terminal domain-containing protein n=1 Tax...	[more]
A0A835Z9F1_9STRA	3.500e-242	99.82	TFIIS N-terminal domain-containing protein n=1 Tax...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 695..719
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 390..558
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 324..343
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..278
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..249
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 29..121 e-value: 5.5E-7 score: 31.1
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 34..117
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 30..112 score: 11.238237

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_34	contig	Contig_34:1033052..1049787 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349041	mRNA_8338	Tribonema minus UTEX_B_3156	mRNA	Contig_34 1032987..1049787 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|349041|estExt_Genemark1.C_Ctg_340097 ID=Trimin1|349041|estExt_Genemark1.C_Ctg_340097|Name=jgi.p|Trimin1|349041|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=874bp
MAGVGGGPALAGLEGAQAKASPVPFGVFVKETFMCISDAADNGRIELVLA
ALEAVKDLPVTEEAVRGSEIGKTIKKLKRGGSTGKARRAPDPEVSRMVDE
IIMAWTKTLEAQREERARMGDEDGEWRRGSLGWKEEIRLGYSVSDKGGDT
SGSEAGGGDYMNRHLSDTMSSAGEQWHRGHDVLDELLTGSGYKAVDETDE
CGRPSGMAPPFLHVGDALADRDGSASASSSMTGAVTADTASSLGTLDMGS
DSSRHRRRSPARRGQYSDDDRMDGDDSGSAAAAAAAAAWDRGSGALGGFA
SPLAMLPRQRRGALGRGVLWGSGSSGGSSGGGGSGGCSWGGQQRSHALTA
GGLASLGGGGSASASAASSVDSANSSAAGGGGSSGGSGGSTLGVLSLLRS
HLEGGSTGGGGGGSGAPSPAEDSGSAAGDDMDAETEAGSVAGSVAGSVAS
RDSEYQYTLPLPPSPLARARRAGAGLGGRGVGGGGGEGGWGSLRPPRGRG
GEDDSSFGEGSAGSGGSDASRSSLKAKVGPPRSPRFSPYAPPDHYGTGWD
SSGSTSSAGPLPTIESFSSALDRSMRVGARRGGGTVKRVTWADRGGGVLR
QIRLFTSVEVSCDHCCRALLRFVPCVRVWAIMGAAACCAGVRLGGLCCRL
SAASAARFVCLYGGSGVLRQIRLFTSTEAEHERALDQQAPGEAWQDLARR
EREHEREMLRREREEAARARACENLRRREMLRRMVPSVVWHRPAPLLSEQ
SHVAPHPAPLLAEQPVKPLSKEAAAQVARTRRMMETLYLNVGDIPPSPAE
PEYCEHSAAGGGKHPHRPTAIFPFEVPAAQMEAQQRLGKCAPPGLTRARG
GAARTSTFALDSRAGHMEPRATR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035441	TFIIS/LEDGF_dom_sf
IPR017923	TFIIS_N