Trimin1|349035|estExt_Genemark1.C_Ctg_340080 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|349035
Unique Name	Trimin1\|349035\|estExt_Genemark1.C_Ctg_340080
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	571

Homology

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BLAST of jgi.p|Trimin1|349035 vs. uniprot
Match: A0A835YV76_9STRA (Pyr_redox_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV76_9STRA)

HSP 1 Score: 926 bits (2393), Expect = 0.000e+0
Identity = 570/570 (100.00%), Postives = 570/570 (100.00%), Query Frame = 0

Query:    1 MSIQSAILRHDPHADVLVVDEKHPPGNPNAPLRRGGGRAEGGGVAFVQGTVRGLDADAGTVMVAAGDAQQGGDEDIFLLNCADVEXXXXXXXXXXXAATACMETTLLLEMVSGWTVTRVPARTYSSTEHACEYDLLKYADVGTVTVAAGDDQQVIGFERCLVATGAPPEPLPDGYVDPAAAGSVLPLHGSEACEAAMWRVRKGGSVVILGSGWEALELACHLRQLSTALVKRLRRLGINVTSHSALRYVSAGREYAPESASGGPQGAPSKGVRVYTCRLHDPLDTCAFNADLLVVARGDKRVERWAEDPQAGLEVGPCGTLTVNQEMMASSNAINAECLDLHRAGEGTYYGVEPELLYATGDAVSAPRRRLGRAAHLRGADFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAIAGANMALSAQHSGSGSSXXXXXXXXXXXXXXGSAQGGATWRHESAPLFAGRAPRAGVHVAFVGDCTAAHDTYGYWWSNAALGRAAAAAHDSVRTALEDTEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVAPPIGKGVVFYLSGGRVR 570
            MSIQSAILRHDPHADVLVVDEKHPPGNPNAPLRRGGGRAEGGGVAFVQGTVRGLDADAGTVMVAAGDAQQGGDEDIFLLNCADVEXXXXXXXXXXXAATACMETTLLLEMVSGWTVTRVPARTYSSTEHACEYDLLKYADVGTVTVAAGDDQQVIGFERCLVATGAPPEPLPDGYVDPAAAGSVLPLHGSEACEAAMWRVRKGGSVVILGSGWEALELACHLRQLSTALVKRLRRLGINVTSHSALRYVSAGREYAPESASGGPQGAPSKGVRVYTCRLHDPLDTCAFNADLLVVARGDKRVERWAEDPQAGLEVGPCGTLTVNQEMMASSNAINAECLDLHRAGEGTYYGVEPELLYATGDAVSAPRRRLGRAAHLRGADFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAIAGANMALSAQHSGSGSSXXXXXXXXXXXXXXGSAQGGATWRHESAPLFAGRAPRAGVHVAFVGDCTAAHDTYGYWWSNAALGRAAAAAHDSVRTALEDTEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVAPPIGKGVVFYLSGGRVR
Sbjct:    1 MSIQSAILRHDPHADVLVVDEKHPPGNPNAPLRRGGGRAEGGGVAFVQGTVRGLDADAGTVMVAAGDAQQGGDEDIFLLNCADVEXXXXXXXXXXXAATACMETTLLLEMVSGWTVTRVPARTYSSTEHACEYDLLKYADVGTVTVAAGDDQQVIGFERCLVATGAPPEPLPDGYVDPAAAGSVLPLHGSEACEAAMWRVRKGGSVVILGSGWEALELACHLRQLSTALVKRLRRLGINVTSHSALRYVSAGREYAPESASGGPQGAPSKGVRVYTCRLHDPLDTCAFNADLLVVARGDKRVERWAEDPQAGLEVGPCGTLTVNQEMMASSNAINAECLDLHRAGEGTYYGVEPELLYATGDAVSAPRRRLGRAAHLRGADFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAIAGANMALSAQHSGSGSSXXXXXXXXXXXXXXGSAQGGATWRHESAPLFAGRAPRAGVHVAFVGDCTAAHDTYGYWWSNAALGRAAAAAHDSVRTALEDTEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVAPPIGKGVVFYLSGGRVR 570

[Close]

BLAST of jgi.p|Trimin1|349035 vs. uniprot
Match: A0A6H5KX96_9PHAE (Pyr_redox_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX96_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.410e-12
Identity = 113/433 (26.10%), Postives = 153/433 (35.33%), Query Frame = 0

Query:  146 VAAGDDQQVIGFERCLVATGAPPEPLPDGYVDPAAAGSVLPLHGSEAC--EAAMWRVRKGGSVVILGSGWEALELACHL----------------------------------------RQLSTALVKRLRRLGINVTSHSALRYVSAGREYAPESASGGPQGAPSKGVRVYTCRLHDPLDTCAFNADLLVVARGDKRVERWAEDPQAGLEVGPCGTLTVNQEMMASSNAINA---------------------------ECLDL--HRAGEGTYYGVEPELLYATGDAVSAPRR----RLGRAA------HLRGADFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAIAGANMALSAQHSGSGSSXXXXXXXXXXXXXXGSAQGGATWRHESAPLFAGRAPRAGVHVAFVGDCTAAHDTYGYWWSNAALG 497
            VA+   Q+V+ F RCLVA G+ P P P G+++PAA   V  L   E    E     V  G +V I+GS W+ALELAC +                                        R LS AL++RL R  I    HS+LR+V +  +                  R +T  L  P +    ++  L + RG    E   E P AG   GP           AS++ ++A                           + LD   H        GV+   L  T D     R     R GR A        RGA  V                               I  A+ AL   HSG  +               G  +GG  + H   P F G AP AGV +A +G+C A+  T+G+WW+N+A G
Sbjct:  251 VASSRKQEVVAFGRCLVALGSRPRPPPPGFIEPAAREHVTLLGSREGAGREELKREVAAGRAVTIVGSSWQALELACWIQEGRSGAXXXXXXXXXXXXXXAGTCRMVFSDYAPLDHILPRYLSVALLRRLNRKHIKTVGHSSLRWVGSANQ------------------RAFTPPLPPPSE---LDSGTLAMDRGPAD-EVDGEVPAAG--PGPVVLPRTLSTTGASTHEVSAAKGEGSSXXXXXXXXXRRLQVMTAHSFDHLDTATHSTDTVVLAGVDVAPLDVTLDLHGTHRGGSGDRFGRKAAALEVDRRRGAVVVNAELAASSRVWVAGDAACFPSQAHGGRRL-VIRSADHAL---HSGRLAGENMAVASGAARDGVGGNEGGRRYHH--TPAFVGEAPLAGVRIAMLGECDASMPTHGFWWTNSATG 653

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349035 vs. uniprot

BLAST of jgi.p|Trimin1|349035 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YV76_9STRA	0.000e+0	100.00	Pyr_redox_2 domain-containing protein n=1 Tax=Trib...	[more]
A0A6H5KX96_9PHAE	3.410e-12	26.10	Pyr_redox_2 domain-containing protein n=2 Tax=Ecto...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036188	FAD/NAD(P)-binding domain superfamily	GENE3D	3.50.50.60		coord: 144..336 e-value: 1.5E-12 score: 49.1
IPR036188	FAD/NAD(P)-binding domain superfamily	GENE3D	3.50.50.60		coord: 170..297 e-value: 1.5E-12 score: 49.1
IPR036188	FAD/NAD(P)-binding domain superfamily	GENE3D	3.50.50.60		coord: 351..426 e-value: 3.4E-5 score: 25.9
IPR036188	FAD/NAD(P)-binding domain superfamily	SUPERFAMILY	51905	FAD/NAD(P)-binding domain	coord: 8..425
IPR023753	FAD/NAD(P)-binding domain	PFAM	PF07992	Pyr_redox_2	coord: 142..329 e-value: 3.9E-6 score: 26.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 520..540
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 508..550
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 426..457
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 426..452

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_34	contig	Contig_34:818848..828663 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349035	mRNA_8320	Tribonema minus UTEX_B_3156	mRNA	Contig_34 818848..828663 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|349035|estExt_Genemark1.C_Ctg_340080 ID=Trimin1|349035|estExt_Genemark1.C_Ctg_340080|Name=jgi.p|Trimin1|349035|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=571bp
MSIQSAILRHDPHADVLVVDEKHPPGNPNAPLRRGGGRAEGGGVAFVQGT
VRGLDADAGTVMVAAGDAQQGGDEDIFLLNCADVETVTMAAGDEQQAATA
CMETTLLLEMVSGWTVTRVPARTYSSTEHACEYDLLKYADVGTVTVAAGD
DQQVIGFERCLVATGAPPEPLPDGYVDPAAAGSVLPLHGSEACEAAMWRV
RKGGSVVILGSGWEALELACHLRQLSTALVKRLRRLGINVTSHSALRYVS
AGREYAPESASGGPQGAPSKGVRVYTCRLHDPLDTCAFNADLLVVARGDK
RVERWAEDPQAGLEVGPCGTLTVNQEMMASSNAINAECLDLHRAGEGTYY
GVEPELLYATGDAVSAPRRRLGRAAHLRGADFVYAAGDAVSAPHRRLGRA
AHLRGADFAHTTGAIAGANMALSAQHSGSGSSGGSGRSVGSGSGSGGSAQ
GGATWRHESAPLFAGRAPRAGVHVAFVGDCTAAHDTYGYWWSNAALGRAA
AAAHDSVRTALEDTEDEDNYSSSAQQQGSNSSSAQQKAALMRATTRAPGG
GVAPPIGKGVVFYLSGGRVR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036188	FAD/NAD-bd_sf
IPR023753	FAD/NAD-binding_dom