mRNA_8274 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|349011
Unique Name	mRNA_8274
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|349011 vs. uniprot
Match: A0A835YVD0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVD0_9STRA)

HSP 1 Score: 142 bits (359), Expect = 5.030e-41
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 2

Query:  140 MLSFPLVAQMLSKCCYACSDCCLACQITRTICGGSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKKRSPFRCPHCRLSARFAARWDHSRRCRTACRLTRRA 493
            MLSFPLVAQMLSKCCYACSDCCLACQITRTICGGSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKKRSPFRCPHCRLSARFAARWDHSRRCRTACRLTRRA
Sbjct:    1 MLSFPLVAQMLSKCCYACSDCCLACQITRTICGGSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKKRSPFRCPHCRLSARFAARWDHSRRCRTACRLTRRA 118

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BLAST of jgi.p|Trimin1|349011 vs. uniprot
Match: A0A835Z5N4_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N4_9STRA)

HSP 1 Score: 1000 bits (2585), Expect = 0.000e+0
Identity = 784/784 (100.00%), Postives = 784/784 (100.00%), Query Frame = 3

Query:  144 MAGSLELKAMAAEGLSSSTSSARSSSIRSTNSSSSVQTKDVPPRVYYVHYETRRTQWERPAMPPAYQQQQQPHYEQAGAEDTDAEAGQEVDKQAADDASAAEKGIAGGDDLRDSSEEDDANVALPSVDFMAQYSGNGPDLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQFGYPEFGSGVPGTRAQVPTTSDAQQPASGDGGENGAVPPLQHEQEQQQRRPMMHTHWAEPRAQSNGGESDGGRGDFGYKQQQQAGSPPGAWAGPAPGTPGMPQXXXXXXXXQQHGMYPGQPAXXXXXXXXXXXXXXXXXWPGAAPQMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRWGAEPYGSPGSPPSARPEAPYGDPYRREGRGGAXXXXXXXXXXXXXXXQQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAPPQRQXXXXXPRYDAYGRPLPPAPGAWGGDDGMYQEQRGGYGGXXGEYGALVPAGRGGSSAQGGGASVRDTGLQLVRGAWGRLLVGKDRGAALLSSARERVSEGAAAASTGIASATWAAGARVRDTVGGVTQRVGTLLDANGRRVDGPYGPPQGAGPWGDERYGPXXXXXXXXYDRDPYGRPDDRGGYAPDARGVYGGXXXXXXXXXXXXXXXRPPGVAAGGPAQPPYGGDRYPPQYGGEVPQQXXXXXXXXXXXXXXXXXXXXXXXXXGGPGRDRFGGQGAPQQGGYGGGAPAQAXEQAGXXXXXXXXXXXXXXGPSQPWGQ 2495
            MAGSLELKAMAAEGLSSSTSSARSSSIRSTNSSSSVQTKDVPPRVYYVHYETRRTQWERPAMPPAYQQQQQPHYEQAGAEDTDAEAGQEVDKQAADDASAAEKGIAGGDDLRDSSEEDDANVALPSVDFMAQYSGNGPDLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQFGYPEFGSGVPGTRAQVPTTSDAQQPASGDGGENGAVPPLQHEQEQQQRRPMMHTHWAEPRAQSNGGESDGGRGDFGYKQQQQAGSPPGAWAGPAPGTPGMPQXXXXXXXXQQHGMYPGQPAXXXXXXXXXXXXXXXXXWPGAAPQMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRWGAEPYGSPGSPPSARPEAPYGDPYRREGRGGAXXXXXXXXXXXXXXXQQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAPPQRQXXXXXPRYDAYGRPLPPAPGAWGGDDGMYQEQRGGYGGXXGEYGALVPAGRGGSSAQGGGASVRDTGLQLVRGAWGRLLVGKDRGAALLSSARERVSEGAAAASTGIASATWAAGARVRDTVGGVTQRVGTLLDANGRRVDGPYGPPQGAGPWGDERYGPXXXXXXXXYDRDPYGRPDDRGGYAPDARGVYGGXXXXXXXXXXXXXXXRPPGVAAGGPAQPPYGGDRYPPQYGGEVPQQXXXXXXXXXXXXXXXXXXXXXXXXXGGPGRDRFGGQGAPQQGGYGGGAPAQAXEQAGXXXXXXXXXXXXXXGPSQPWGQ
Sbjct:    1 MAGSLELKAMAAEGLSSSTSSARSSSIRSTNSSSSVQTKDVPPRVYYVHYETRRTQWERPAMPPAYQQQQQPHYEQAGAEDTDAEAGQEVDKQAADDASAAEKGIAGGDDLRDSSEEDDANVALPSVDFMAQYSGNGPDLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQFGYPEFGSGVPGTRAQVPTTSDAQQPASGDGGENGAVPPLQHEQEQQQRRPMMHTHWAEPRAQSNGGESDGGRGDFGYKQQQQAGSPPGAWAGPAPGTPGMPQXXXXXXXXQQHGMYPGQPAXXXXXXXXXXXXXXXXXWPGAAPQMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRWGAEPYGSPGSPPSARPEAPYGDPYRREGRGGAXXXXXXXXXXXXXXXQQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAPPQRQXXXXXPRYDAYGRPLPPAPGAWGGDDGMYQEQRGGYGGXXGEYGALVPAGRGGSSAQGGGASVRDTGLQLVRGAWGRLLVGKDRGAALLSSARERVSEGAAAASTGIASATWAAGARVRDTVGGVTQRVGTLLDANGRRVDGPYGPPQGAGPWGDERYGPXXXXXXXXYDRDPYGRPDDRGGYAPDARGVYGGXXXXXXXXXXXXXXXRPPGVAAGGPAQPPYGGDRYPPQYGGEVPQQXXXXXXXXXXXXXXXXXXXXXXXXXGGPGRDRFGGQGAPQQGGYGGGAPAQAXEQAGXXXXXXXXXXXXXXGPSQPWGQ 784

[Close]

BLAST of jgi.p|Trimin1|349011 vs. uniprot
Match: D8LJY1_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJY1_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 3.880e-9
Identity = 60/148 (40.54%), Postives = 82/148 (55.41%), Query Frame = 3

Query: 1590 PAPGAWGG----DDGMYQEQRGG-----------YGGXXGEYGALVPAGRGGSSAQGGGASVRDTGLQLVRGAWGRLLVGKDRGAALLSSARERVSEGAAAASTGIASATWAAGARVRDTVGGVTQRVGTLLDANGRRVDGPYG-PPQ 1985
            PA G +GG    +DG YQ   GG           YGG      ALVP+  G   A  GG  V++ GLQLV+GAW R+LVGKD+  A L  A+E+          GIA++T  A  ++++T+G VT RV  +L+ + + + GPYG PPQ
Sbjct:  493 PARGDYGGYYGRNDGYYQGPPGGNGAPTQQGNAEYGGFPAGSRALVPSNGG---APRGGLEVKEQGLQLVKGAWARILVGKDKTTAALYEAKEKA---------GIAAST--ASYKIKNTMGSVTSRVADVLEGDPQGLAGPYGQPPQ 626

[Close]

BLAST of jgi.p|Trimin1|349011 vs. uniprot
Match: A0A6H5KXY0_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXY0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.920e-9
Identity = 58/141 (41.13%), Postives = 80/141 (56.74%), Query Frame = 3

Query: 1599 GAWGGDDGMYQEQRGGYGGXX----GEYG-------ALVPAGRGGSSAQGGGASVRDTGLQLVRGAWGRLLVGKDRGAALLSSARERVSEGAAAASTGIASATWAAGARVRDTVGGVTQRVGTLLDANGRRVDGPYG-PPQ 1985
            G +G +DG YQ   GG GG       EYG       ALVP   G   A  GG  V++ GLQLV+GAW R+LVGKD+  A L  A+E+          G+A++T  A  ++++T+G VT RV  +L+ + + + GPYG PPQ
Sbjct:  446 GYYGRNDGYYQGPPGGNGGSRQQGNAEYGGFPAGSRALVPNNGG---APRGGLEVKEQGLQLVKGAWARILVGKDKTRAALHDAKEKA---------GVAAST--ATYKIKNTMGSVTSRVADVLEGDPQGLAGPYGQPPQ 572

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349011 vs. uniprot
BLAST of jgi.p|Trimin1|349011 vs. uniprot

BLAST of jgi.p|Trimin1|349011 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YVD0_9STRA	5.030e-41	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]

BLAST of jgi.p|Trimin1|349011 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835Z5N4_9STRA	0.000e+0	100.00	WW domain-containing protein n=1 Tax=Tribonema min...	[more]
D8LJY1_ECTSI	3.880e-9	40.54	WW domain-containing protein n=1 Tax=Ectocarpus si...	[more]
A0A6H5KXY0_9PHAE	6.920e-9	41.13	WW domain-containing protein n=1 Tax=Ectocarpus sp...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_34	contig	Contig_34:355743..357160 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|349011\|estExt_Genemark1.C_Ctg_340040
Hectar predicted targeting category	signal peptide
TranscriptId	349333
Track	FilteredModels1
ProteinId	349011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349011	gene_8274	Tribonema minus UTEX_B_3156	gene	Contig_34 355743..357160 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349011	Trimin1\|349011\|estExt_Genemark1.C_Ctg_340040	Tribonema minus UTEX_B_3156	polypeptide	Contig_34 355882..357158 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_8274_1	exon_8274_1	Tribonema minus UTEX_B_3156	exon	Contig_34 355743..355988 +
exon_8274_2	exon_8274_2	Tribonema minus UTEX_B_3156	exon	Contig_34 356784..356990 +
exon_8274_3	exon_8274_3	Tribonema minus UTEX_B_3156	exon	Contig_34 357119..357160 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_8274	UTR5_8274	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_34 355743..355881 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_8274	CDS_8274	Tribonema minus UTEX_B_3156	CDS	Contig_34 355882..355988 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_8274	UTR3_8274	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_34 357159..357160 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_34:355743..357160+
coding sequence from alignment at Contig_34:355743..357160+

spliced messenger RNA

>mRNA_8274 ID=mRNA_8274|Name=jgi.p|Trimin1|349011|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=495bp|location=Sequence derived from alignment at Contig_34:355743..357160+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCCGGGTGGACTGCAGGCAATGGACTCAGCAAGATCTTGCGCTTCTGCGC
ATGTATCAGCGACCAGTCACGATCCAATGGTGAGGCAGCATGACTACTCT
CCTCTTGCGCCCCGGATTGTGTGATACATTCATGTAGCAATGCTCAGCTT
CCCTCTCGTGGCGCAGATGTTGTCTAAGTGCTGCTATGCCTGTAGTGACT
GCTGCCTGGCATGCCAGATCACGCGAACGATTTGTGGCGGTTCCTGCAGC
AGCAGCGCCAGCAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCGCCGCCGC
CACCGCAGCAGCAGCAGCAGCAGCGCCGATGCAAGAAGCGCTCACCCTTT
CGCTGCCCTCACTGCAGACTCTCAGCGCGCTTTGCAGCTCGCTGGGACCA
CAGCCGTCGTTGCCGCACCGCCTGCCGGTTGACCCGCAGGGCTGA

protein sequence of jgi.p|Trimin1|349011

>Trimin1|349011|estExt_Genemark1.C_Ctg_340040 ID=Trimin1|349011|estExt_Genemark1.C_Ctg_340040|Name=jgi.p|Trimin1|349011|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=118bp
MLSFPLVAQMLSKCCYACSDCCLACQITRTICGGSCSSSASRQQQQQQQQ
QQQQQQQQQQQQQQQQQPPPPPQQQQQQRRCKKRSPFRCPHCRLSARFAA
RWDHSRRCRTACRLTRRA

mRNA from alignment at Contig_34:355743..357160+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8274 ID=mRNA_8274|Name=jgi.p|Trimin1|349011|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1418bp|location=Sequence derived from alignment at Contig_34:355743..357160+ (Tribonema minus UTEX_B_3156 )
GCCGGGTGGACTGCAGGCAATGGACTCAGCAAGATCTTGCGCTTCTGCGC
ATGTATCAGCGACCAGTCACGATCCAATGGTGAGGCAGCATGACTACTCT
CCTCTTGCGCCCCGGATTGTGTGATACATTCATGTAGCAATGCTCAGCTT
CCCTCTCGTGGCGCAGATGTTGTCTAAGTGCTGCTATGCCTGTAGTGACT
GCTGCCTGGCATGCCAGATCACGCGAACGATTTGTGGCGGTTCCTGGTAC
GGATGATGTTGCCATGCACATTGACGCAGACAATGCTGTCATTGCCGGTG
CTCAACGCAGACAATGCTGTCATTGTATGTGCTGGCATGTGTACGATTCG
AAGCGTACTTGCCAAAGCCAGCATCACCGGGCCTAAATAAGTGGTATAGA
AGCATACTGAGCATCGCTGTTTGTCTCGGGTATGAGTACGGGCGCACCAG
CTTTGTAGGCATAGCTGTTGAAGTTGAAGTTACTATGATGGCTCTCGTCA
CGGCGCAGCCTGCATGGTGCCCAGCCAAAGCGGCTTGTTGACACGTGCAC
CCTAACCTCAACCCTAAGCTCGCAGCACGTCCCTGCGACTGGGGCAGCAG
CGTGCAACGCCGCGTGTGCACTGCTGGCAGTGACTGGCACCGCCCCCACT
GTGACGATGACACAGCATTGCGCAATGATCAGTAAGCTGTGACAGTGACT
GTCACCGCCCTCACCGCCATGATGAAAAATCTTTGCACAGTGACCAGTAA
GCTGAGGCTGAGTGTTGATGCAGCTGCACGCTGAGCACTGGGCACAGCAC
CGCAGTGTGAGCACTGTCACTGTTGCTTGGGCGCTGCCACAGCGGCGGCC
CTGCTGAGCTATGAACACGGAATCACAACTGTGACCGGTGATGCCGTCAG
CAGCTGCTGAGAGGTGTGCTTGGTGAACCTGAGCGCTGTCCCATGCTGTG
CACCGCGCACCGCGCCTGCTTGTTCGCATCAGTGACGCGGGTGCGTGCGC
CACCGCAAAGCGTGGCGCAGCCGCCGCCGCCGCCGCCGCAGCAGCAGCAG
CGCCAGCAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCGCCGCCGCCACCG
CAGCAGCAGCAGCAGCAGCGCCGATGCAAGAAGCGCTCACCCTTTCGCTG
CCCTCACTGCAGACTCTCAGCGCGCTTTGCAGCTCGCTGGGACCACAGGT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGCTGGACC
GCTGGTGCACATGAGACCGACCTAACAGAGCTGCTGAGCACTGCATGCCG
CCCTCTCTCTGTCCTCTTGCTCGCAGCCGTCGTTGCCGCACCGCCTGCCG
GTTGACCCGCAGGGCTGA

Coding sequence (CDS) from alignment at Contig_34:355743..357160+

>mRNA_8274 ID=mRNA_8274|Name=jgi.p|Trimin1|349011|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=354bp|location=Sequence derived from alignment at Contig_34:355743..357160+ (Tribonema minus UTEX_B_3156 )
ATGCTCAGCTTCCCTCTCGTGGCGCAGATGTTGTCTAAGTGCTGCTATGC
CTGTAGTGACTGCTGCCTGGCATGCCAGATCACGCGAACGATTTGTGGCG
GTTCCTGCAGCAGCAGCGCCAGCAGGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACCGCCGCCGCCACCGCAGCAGCAGCAGCAGCAGCGCCGATGCAAGAAGC
GCTCACCCTTTCGCTGCCCTCACTGCAGACTCTCAGCGCGCTTTGCAGCT
CGCTGGGACCACAGCCGTCGTTGCCGCACCGCCTGCCGGTTGACCCGCAG
GGCT