Trimin1|349002|estExt_Genemark1.C_Ctg_340027 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|349002
Unique Name	Trimin1\|349002\|estExt_Genemark1.C_Ctg_340027
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	421

Homology

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BLAST of jgi.p|Trimin1|349002 vs. uniprot
Match: A0A835YUU9_9STRA (LNR domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUU9_9STRA)

HSP 1 Score: 548 bits (1411), Expect = 3.460e-192
Identity = 420/420 (100.00%), Postives = 420/420 (100.00%), Query Frame = 0

Query:    1 MHPFEPVAVLGTGTAADGLYTPSSRGQSWVKRVLPTPPSPSCGALPLVGDGICDSDANTPECGFDGGDCCAATCTAWGEGGGDDETPSCEPLQSAGCIEHASAQYELALVRDDHHHGSSAQASLSSSFWQLATWTLSTGMPKRRSRYWRAAATSPLGVTEAWQQCSEEGCASSPVNVWVGCLGDRPAEPEAKAARVLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGADAPTDGPTVPTLATPAPTPAPSNEXXXXXXXXXXXXXXXXXXKDTPAXXEAPAXXXXXXXXXXXXXXXXXXXGGQTELPTPAVTKXXXXXXXXXXEPDXXXXXDKXXXXXXXXXXXXXXXXXXTKNPDKPDDKXXXXXXXXXXTEKPGDKPPKGGGGDGKPPKGDGGDTXXXXXXXXXXXXXXXXVELG 420
            MHPFEPVAVLGTGTAADGLYTPSSRGQSWVKRVLPTPPSPSCGALPLVGDGICDSDANTPECGFDGGDCCAATCTAWGEGGGDDETPSCEPLQSAGCIEHASAQYELALVRDDHHHGSSAQASLSSSFWQLATWTLSTGMPKRRSRYWRAAATSPLGVTEAWQQCSEEGCASSPVNVWVGCLGDRPAEPEAKAARVLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGADAPTDGPTVPTLATPAPTPAPSNEXXXXXXXXXXXXXXXXXXKDTPAXXEAPAXXXXXXXXXXXXXXXXXXXGGQTELPTPAVTKXXXXXXXXXXEPDXXXXXDKXXXXXXXXXXXXXXXXXXTKNPDKPDDKXXXXXXXXXXTEKPGDKPPKGGGGDGKPPKGDGGDTXXXXXXXXXXXXXXXXVELG
Sbjct:    1 MHPFEPVAVLGTGTAADGLYTPSSRGQSWVKRVLPTPPSPSCGALPLVGDGICDSDANTPECGFDGGDCCAATCTAWGEGGGDDETPSCEPLQSAGCIEHASAQYELALVRDDHHHGSSAQASLSSSFWQLATWTLSTGMPKRRSRYWRAAATSPLGVTEAWQQCSEEGCASSPVNVWVGCLGDRPAEPEAKAARVLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGADAPTDGPTVPTLATPAPTPAPSNEXXXXXXXXXXXXXXXXXXKDTPAXXEAPAXXXXXXXXXXXXXXXXXXXGGQTELPTPAVTKXXXXXXXXXXEPDXXXXXDKXXXXXXXXXXXXXXXXXXTKNPDKPDDKXXXXXXXXXXTEKPGDKPPKGGGGDGKPPKGDGGDTXXXXXXXXXXXXXXXXVELG 420

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BLAST of jgi.p|Trimin1|349002 vs. uniprot
Match: A0A2E1Q9S2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E1Q9S2_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 8.300e-5
Identity = 29/56 (51.79%), Postives = 30/56 (53.57%), Query Frame = 0

Query:   28 SWVKRVLPTPPSPSC-GALPLVGDGICDSDANTPECGFDGGDCCAATCTAWGEGGG 82
            SW        P P C G L  VGDG CD   N PECG+DGGDCCA TC   G   G
Sbjct: 2159 SWTYPTFAPIPYPDCSGTLAFVGDGQCDMGNNNPECGWDGGDCCADTCQTDGAAXG 2214

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349002 vs. uniprot

BLAST of jgi.p|Trimin1|349002 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YUU9_9STRA	3.460e-192	100.00	LNR domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A2E1Q9S2_9BACT	8.300e-5	51.79	Uncharacterized protein n=1 Tax=Candidatus Marinim...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 309..326 score: 32.22 coord: 270..291 score: 40.91 coord: 234..250 score: 43.53 coord: 336..361 score: 35.38
None	No IPR available	GENE3D	4.10.470.20		coord: 22..73 e-value: 1.7E-6 score: 30.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..420
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 352..377
IPR000800	Notch domain	SMART	SM00004	NL_2	coord: 35..70 e-value: 1.6E-5 score: 34.3
IPR000800	Notch domain	PFAM	PF00066	Notch	coord: 48..69 e-value: 8.7E-6 score: 26.1

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_34	contig	Contig_34:205541..211533 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349002	mRNA_8260	Tribonema minus UTEX_B_3156	mRNA	Contig_34 205541..211533 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|349002|estExt_Genemark1.C_Ctg_340027 ID=Trimin1|349002|estExt_Genemark1.C_Ctg_340027|Name=jgi.p|Trimin1|349002|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=421bp
MHPFEPVAVLGTGTAADGLYTPSSRGQSWVKRVLPTPPSPSCGALPLVGD
GICDSDANTPECGFDGGDCCAATCTAWGEGGGDDETPSCEPLQSAGCIEH
ASAQYELALVRDDHHHGSSAQASLSSSFWQLATWTLSTGMPKRRSRYWRA
AATSPLGVTEAWQQCSEEGCASSPVNVWVGCLGDRPAEPEAKAARVLKKK
KKGGKDDGGGGGGGGDGGGGGGGGGGGGDGADAPTDGPTVPTLATPAPTP
APSNEGGGNGGGGGDNNGNGEGKKDTPAPTEAPATPAPTQPDNGGNGGGG
GGDGGQTELPTPAVTKAPGDPPKDTPEPDGPGKGDKTPAPTEPVDKPPKD
TPAPTKNPDKPDDKPPKGDKTPAPTEKPGDKPPKGGGGDGKPPKGDGGDT
PAPTKDPQGPDNNPPKVELG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000800	Notch_dom