Trimin1|349000|estExt_Genemark1.C_Ctg_340023 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349000
Unique NameTrimin1|349000|estExt_Genemark1.C_Ctg_340023
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length65
Homology
BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: A0A836CDU4_9STRA (zf-CHCC domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU4_9STRA)

HSP 1 Score: 133 bits (335), Expect = 9.800e-40
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0
Query:    1 MSTSRVKTDFETFPTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTKAKE 65
            MSTSRVKTDFETFPTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTKAKE
Sbjct:    1 MSTSRVKTDFETFPTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTKAKE 65          
BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: K3WW26_GLOUD (zf-CHCC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WW26_GLOUD)

HSP 1 Score: 61.2 bits (147), Expect = 1.840e-10
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 0
Query:    9 DFETFPTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTKAK 64
            D    P      HRSDA QRIA V V+EV+G +A+C GG G LGHP E++ L   K
Sbjct:   43 DVNPTPYEDINRHRSDAEQRIAQVPVVEVEGNIAVCDGGGGALGHPLEYIQLDTVK 98          
BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: A0A7S1GQT8_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GQT8_CYCTE)

HSP 1 Score: 60.1 bits (144), Expect = 5.200e-10
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 0
Query:   14 PTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTK 62
            P    G HRS+A + I    +IEVDGE+A+C GGAGPLGHP E+++L +
Sbjct:   72 PKYALGKHRSNALELIQQQPIIEVDGEMAVCDGGAGPLGHPLEYISLER 120          
BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: A0A3R7JAB4_9STRA (zf-CHCC domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JAB4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.530e-10
Identity = 27/51 (52.94%), Postives = 32/51 (62.75%), Query Frame = 0
Query:   14 PTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTKAK 64
            P      HRSDA QRIA V V+EV G +A+C GG G LGHP E++ L   K
Sbjct:   39 PFEDVNRHRSDAEQRIAQVPVVEVAGNVAVCDGGGGALGHPVEYIQLDTVK 89          
BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: A0A2D4BTY1_PYTIN (zf-CHCC domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BTY1_PYTIN)

HSP 1 Score: 58.5 bits (140), Expect = 2.410e-9
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 0
Query:   14 PTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTL 60
            P      HRSDA QRIA V +++V+G++A+C GG G LGHP E++ L
Sbjct:   54 PYEDVNRHRSDAEQRIAQVPIVDVEGDVAVCDGGGGALGHPLEYIQL 100          
BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: A0A1E7F2D1_9STRA (zf-CHCC domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2D1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.270e-9
Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 0
Query:   17 KYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTK 62
            K G HRS+A + I  + ++EV+GE+AIC GG G LGHP E+++L +
Sbjct:   14 KLGKHRSNALELIEKIPIVEVEGEMAICDGGGGALGHPLEYISLQR 59          
BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: A0A1Z5KNK4_FISSO (zf-CHCC domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KNK4_FISSO)

HSP 1 Score: 57.4 bits (137), Expect = 6.520e-9
Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 0
Query:   17 KYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTK 62
            K G HRS+A + +  V +IEV+GE+A+C GG G LGHP E+++L +
Sbjct:   61 KLGKHRSNAMELVHKVPIIEVEGEMAVCDGGGGALGHPLEYISLAR 106          
BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: B7G589_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G589_PHATC)

HSP 1 Score: 57.4 bits (137), Expect = 6.520e-9
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 0
Query:   17 KYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTK 62
            K G HRS+A + +  ++ IEVDGE+AIC GG G LGHP E+++L +
Sbjct:   63 KLGKHRSNALELVHKIAPIEVDGEMAICDGGGGALGHPLEYISLAR 108          
BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: F0X2A7_9STRA (Uncharacterized protein AlNc14C931G12647 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X2A7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 8.300e-9
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 0
Query:   21 HRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTL 60
            HRSDA  RIA V V+EV+G LA+C GG G LGHP E++ L
Sbjct:   55 HRSDAEIRIAQVPVVEVEGNLAVCDGGGGALGHPLEYIQL 94          
BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: A0A7S1E554_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E554_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 8.670e-8
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 0
Query:   14 PTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTK 62
            P   +G HRS+A   I    +IEV+GE+AIC GG G LGHP E+++L +
Sbjct:   69 PKYLHGKHRSNALDLIEKQDIIEVEGEMAICDGGGGSLGHPLEYISLER 117          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349000 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A836CDU4_9STRA9.800e-40100.00zf-CHCC domain-containing protein (Fragment) n=1 T... [more]
K3WW26_GLOUD1.840e-1050.00zf-CHCC domain-containing protein n=1 Tax=Globispo... [more]
A0A7S1GQT8_CYCTE5.200e-1053.06Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A3R7JAB4_9STRA8.530e-1052.94zf-CHCC domain-containing protein n=3 Tax=Phytopht... [more]
A0A2D4BTY1_PYTIN2.410e-951.06zf-CHCC domain-containing protein (Fragment) n=1 T... [more]
A0A1E7F2D1_9STRA3.270e-950.00zf-CHCC domain-containing protein n=1 Tax=Fragilar... [more]
A0A1Z5KNK4_FISSO6.520e-950.00zf-CHCC domain-containing protein n=1 Tax=Fistulif... [more]
B7G589_PHATC6.520e-952.17Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
F0X2A7_9STRA8.300e-962.50Uncharacterized protein AlNc14C931G12647 n=1 Tax=A... [more]
A0A7S1E554_9STRA8.670e-848.98Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019401Zinc finger, CHCC-typePFAMPF10276zf-CHCCcoord: 42..64
e-value: 2.9E-5
score: 24.0
NoneNo IPR availableGENE3D2.60.260.40q5lls5 like domainscoord: 28..65
e-value: 3.8E-6
score: 28.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_34contigContig_34:182021..182846 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349000mRNA_8255Tribonema minus UTEX_B_3156 mRNAContig_34 181912..182847 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349000|estExt_Genemark1.C_Ctg_340023 ID=Trimin1|349000|estExt_Genemark1.C_Ctg_340023|Name=jgi.p|Trimin1|349000|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=65bp
MSTSRVKTDFETFPTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGP
LGHPTEFMTLTKAKE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019401Znf_CHCC