mRNA_8272 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: A0A835YWQ3_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWQ3_9STRA) HSP 1 Score: 516 bits (1329), Expect = 1.070e-184 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 1
Query: 1 MQVDRYLRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVEKLREGVATTDGVFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDENLQPGQCAPVVGSALTWAQWLRRTCEKKLLVQGPHPRIRRRMARKAEGGXXXXXXXXXETAIETVIAQQL 804
MQVDRYLRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVEKLREGVATTDGVFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDENLQPGQCAPVVGSALTWAQWLRRTCEKKLLVQGPHPRIRRRMARKAEGGXXXXXXXXXETAIETVIAQQL
Sbjct: 1 MQVDRYLRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVEKLREGVATTDGVFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDENLQPGQCAPVVGSALTWAQWLRRTCEKKLLVQGPHPRIRRRMARKAEGGXXXXXXXXXETAIETVIAQQL 268
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: D8LMI5_ECTSI (S4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMI5_ECTSI) HSP 1 Score: 236 bits (603), Expect = 1.030e-72 Identity = 124/217 (57.14%), Postives = 157/217 (72.35%), Query Frame = 1
Query: 4 QVDRYLRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVE-PAEGMPPPGDELVEKLREGVATTDGVFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDENLQPGQCAPVVGSALTWAQ 651
+VD +R+GRV V+G VV+ K + V+G+V +PLL+AFHKPKG+++TLSDDWDR L DVLP + L + HPVGRLDADSSGLLLLSSDG LTH+LL P+F+VEREY V+ P EG P GD LV L+EG+ T DGV+ +V I+G V ++V+EGK RMVRRMLANAGYPV+EL R RYG I++ + L G+ PV G AL WA+
Sbjct: 152 EVDTLVRRGRVKVDGAVVKSPKTKLPVDCVIEVNGEVHGPVPLLVAFHKPKGVITTLSDDWDREDLSDVLPKSLLLKHHPVGRLDADSSGLLLLSSDGALTHRLLNPRFEVEREYVASVDVPPEGEEP-GDSLVTALKEGITTADGVYKADVPAISGRDVGVVVREGKNRMVRRMLANAGYPVLELRRERYGKILLGD-LPEGEHVPVSGDALEWAR 366
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: A0A5B8XVG1_9DELT (Pseudouridine synthase n=1 Tax=Bradymonadales bacterium V1718 TaxID=2600177 RepID=A0A5B8XVG1_9DELT) HSP 1 Score: 185 bits (469), Expect = 1.280e-54 Identity = 104/213 (48.83%), Postives = 133/213 (62.44%), Query Frame = 1
Query: 13 RYLRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDE--LVEKLREGVATTDGVFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDENLQPGQCAPVVGSALTW 645
R R+GRV V G VVR + K ++E+ VDG+ E PL +HKP G+ S+++D+W R L++VLP + MHPVGRLDAD+SGLLL SSDG LT KLL PK +V R YE LVE P DE L L GV T +GVF + +++G + L V EGKYRMVRR+LAN+G+PVV+LHR YG + NL+PG S W
Sbjct: 21 RLCRQGRVRVGGMVVRDPSQKVDGSLEVLVDGEAYEEAPLFAIYHKPVGVQSSMADNWGREDLQEVLPEAWQSVMHPVGRLDADTSGLLLFSSDGKLTQKLLHPKHEVPRVYEALVEN------PVDEARLRTTLAAGVETAEGVFSAGLLSVDGQTLRLEVSEGKYRMVRRILANSGHPVVKLHRVSYGGFELG-NLEPGALRACEESEWEW 226
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: A0A7S2SSU6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSU6_9STRA) HSP 1 Score: 180 bits (457), Expect = 4.710e-52 Identity = 100/221 (45.25%), Postives = 140/221 (63.35%), Query Frame = 1
Query: 4 QVDRYLRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQ-RMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVEKLRE----GVATTDGVFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDE-NLQPGQCAPVVGSALTWA 648
+ D +++GRVSV+G ++R + + + +DG+ L PLL+A +KPKG+ ST+ D R L + P+ + + ++HPVGRLDAD++GLLL S DG LT LL P+ +VEREY V+ GD L LRE GV T+DG FP E+ +V ++VKEGKYRMVRR+LAN G PVVELHR RYG + +++ + G+ APV G A+ WA
Sbjct: 18 ECDTLVKRGRVSVDGEILRSPTRRVPASSRIHLDGEELLPTPLLMALYKPKGVHSTMGDPLGRPSLLEATPSNWKRMQLHPVGRLDADTTGLLLFSRDGQLTQYLLHPRNEVEREYVAQVD--------GDALRGDLREVLAAGVETSDGTFPAELVEQAEGRVRVMVKEGKYRMVRRLLANVGLPVVELHRVRYGPVRLEDLGIDVGEWAPVTGEAVEWA 230
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: A0A2F0ALH2_9DELT (Pseudouridine synthase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2F0ALH2_9DELT) HSP 1 Score: 157 bits (396), Expect = 1.440e-43 Identity = 87/196 (44.39%), Postives = 121/196 (61.73%), Query Frame = 1
Query: 7 VDRYLRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVEKLREGVATTDGVFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDE 594
V + ++ GRVSV+G K D + DG + LPLL+ +HKP +V T+ D + R+ L +P ++ R HPVGRLD D+SGLLL S G LT L PK V R Y +V+ G+P + LV++L EGV T+ G FP +V ++G +V L V EGK+RMVRR+LAN G+PV++LHR RYG I + +
Sbjct: 21 VQKAIKAGRVSVDGQAQTDPKFKVSDAQIIVFDGIEIGVLPLLLIWHKPIDVVCTMRDPFGRSDLSGAIPESFQGRFHPVGRLDRDTSGLLLFSRSGPLTQWFLHPKRSVRRWYTAVVD---GLP--SNALVKQLAEGVETSLGTFPAQVHTLSGNEVILSVTEGKHRMVRRLLANCGHPVLDLHRFRYGPIELGD 211
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: A0A7S2JZM0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZM0_9STRA) HSP 1 Score: 155 bits (392), Expect = 9.680e-43 Identity = 92/208 (44.23%), Postives = 130/208 (62.50%), Query Frame = 1
Query: 43 NGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVL----PATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVEKLREGVATTDGVFPGEVTNI-NGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDENLQPGQCAPVVGSALTWAQ 651
N V++ G K + +L VDG ++ +PLL+ +HKP ++S + D+ R L D L P + MHPVGRLDAD+SGL+L SSDG LT +LL P+ +VE+EY VE EG D+L E+L GV TT+GV ++ ++ + V LIV+EGK+RMVRRMLAN G+PV+EL R R+G +V +L+ G + L WA+
Sbjct: 46 NDIVIQKGDQKVPENAQLVVDGYIIPPIPLLLVYHKPTDVLSAMKDN-SRYCLGDALMEKSPLLFNAGMHPVGRLDADTSGLILFSSDGALTQRLLHPRHEVEKEYVATVETVEGEINE-DKLREQLSRGVETTEGVHTAQLLSVTDNDTVRLIVQEGKHRMVRRMLANCGFPVIELRRERHG-VVWLGDLEEGAFRDLNPEELEWAE 250
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: A0A8J5XQ74_DIALT (PseudoU_synth_2 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XQ74_DIALT) HSP 1 Score: 157 bits (398), Expect = 9.710e-43 Identity = 109/259 (42.08%), Postives = 139/259 (53.67%), Query Frame = 1
Query: 7 VDRYLRKGRVSVNGTVVRGGAHKFY--DTVELRVDGDVLEALP--LLIAFHKPKGIVSTLSDDWDRTHLKDVL---PATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVEKLREGVATTDGVFPGEVTNI---------------------NGLK-------------VSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMD-ENLQPGQCAPVVGSALTWAQWL 657
V R LRKG V V+G R GA K V + DG+ LE P LL+AFHKP G+ ST++D+ RT L L P + +HPVGRLDAD+SGLLL SS G LT +LL P+ E+EY LV A + G L L GV TT+G + ++ GL+ + L V EGK+RMVRR+LANAG+PV+ LHR R+GD+V+D + L PG A V G AL WA+ L
Sbjct: 69 VSRALRKGLVHVDGATERDGARKVALGGAVGVTFDGEPLELRPPPLLVAFHKPLGMHSTMADERGRTDLAAALVEQPPLWRDELHPVGRLDADTSGLLLFSSSGGLTQRLLHPRHGTEKEYAALVGGAP-IDDGGAALRATLAAGVQTTEGTHAAALLDVVVLDNDGARAAAEETARAAESAGLRRDDGAPPIQPVATLRLSVTEGKHRMVRRLLANAGHPVLALHRVRFGDVVLDPDELPPGASAVVGGDALAWAERL 326
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: A0A0G4HMX6_9ALVE (S4 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HMX6_9ALVE) HSP 1 Score: 154 bits (389), Expect = 5.790e-40 Identity = 91/226 (40.27%), Postives = 130/226 (57.52%), Query Frame = 1
Query: 19 LRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDW---DRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVEKLREGVATTDGVFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDENLQPGQCAPVVGSALTWAQWLRRTCEKKLLV 687
+RK +V +NG+ + A K + VDG +PL++ +HKP +++ D R L D LP + +HPVGRLD +++GLLLLS +G LT +LL PK VEREY VE + P LV++L GV TT+G+F ++ N + LIV EGK+RMVRRMLANAGYPV L R R+G I + + + PG+ + L WA+ L + + +V
Sbjct: 125 IRKKKVKLNGSPILSAADKVPLDAIVEVDGTPTHPIPLMMVYHKPTNVLNEFGKDRLGSGRLTLSDTLPEYVQRSLHPVGRLDYETNGLLLLSREGVLTQRLLHPKRLVEREYVARVEM--DLDPL---LVQRLETGVQTTEGIFRAKIVNFRNDTMQLIVTEGKHRMVRRMLANAGYPVTSLTRIRFGGIQLGD-MAPGELRALEPDELAWAENLMESTYNQQMV 344
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: R1DZZ0_EMIHU (PseudoU_synth_2 domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DZZ0_EMIHU) HSP 1 Score: 146 bits (368), Expect = 1.220e-39 Identity = 92/200 (46.00%), Postives = 118/200 (59.00%), Query Frame = 1
Query: 7 VDRYLRKGRVSVNGTVV--------RGGAHKF-YDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVE-KLREGVATTDG----VFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHR 564
VDR +RKG V + GG K +D L VDG PLL A+HKP G+VS++ DD R L VLP + + +HPVGRLDAD++GLLL DG LTH+LL PK+ VEREY VE A +EL+ +L GV T + V GE+ ++ G +V + +EGKYRMVRR+LAN G+PVV LHR
Sbjct: 21 VDRLIRKGLVELENPETGSYEVVGKSGGKLKVPWDACPL-VDGFDYPPPPLLAAYHKPLGVVSSMKDDKGRPDLASVLPQPWQKALHPVGRLDADTTGLLLFCRDGDLTHRLLHPKYVVEREYVATVEGAVD-----EELLRGRLAAGVETVEEGEPFVVQGELLSVEGQRVRCVFREGKYRMVRRVLANCGHPVVALHR 214
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: A0A7S1UHB6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHB6_9STRA) HSP 1 Score: 147 bits (371), Expect = 7.710e-39 Identity = 105/269 (39.03%), Postives = 135/269 (50.19%), Query Frame = 1
Query: 19 LRKGRVSVNGTVVRGGAHKFYDTVELRVDG--------------DVLEALP-------LLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLV----------EP-------------AEGMPPPG--DELVEKLREGVATTDGVFPGEVTN-----------INGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDE-NLQPGQCAPVVGSALTWAQ 651
+ G+V+V G VR KF V++ V G +++ P LL+A+HKP G++STL D R L LP +R HPVGRLDAD+SGLLLLSSDG LTH+LL PK VEREY + +P A M P G +EL E+L GV TT+G F V + N V L V EGKYRMVRR+L NAG+ V+ LHR RYG I++++ L + V L WA+
Sbjct: 53 IMHGKVTVAGAAVRSPKDKFDVDVDMEVTGLRRGTSEDAGPPRPQTVKSEPTDIKFSSLLLAYHKPVGVLSTLRDPQGRRDLTTELPGGIFRRFHPVGRLDADTSGLLLLSSDGDLTHRLLHPKHNVEREYIATIAWPRPEDFAADPTLTPTLTRVEGAAAPKMAPSGSLEELRERLAAGVVTTEGTFSARVVDGEEGWRNTKHGENVGWVQLAVAEGKYRMVRRVLMNAGHEVLGLHRVRYGGILLNDLRLPENEVTEVPQEMLGWAE 321 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8272 ID=mRNA_8272|Name=jgi.p|Trimin1|164944|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=807bp|location=Sequence derived from alignment at Contig_34:321747..324455+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCAGGTGGACAGGTATCTACGAAAGGGGCGCGTAAGCGTCAACGGCACback to top protein sequence of jgi.p|Trimin1|164944 >Trimin1|164944|e_gw1.34.103.1 ID=Trimin1|164944|e_gw1.34.103.1|Name=jgi.p|Trimin1|164944|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=269bp MQVDRYLRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKback to top mRNA from alignment at Contig_34:321747..324455+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8272 ID=mRNA_8272|Name=jgi.p|Trimin1|164944|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2709bp|location=Sequence derived from alignment at Contig_34:321747..324455+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_34:321747..324455+ >mRNA_8272 ID=mRNA_8272|Name=jgi.p|Trimin1|164944|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=807bp|location=Sequence derived from alignment at Contig_34:321747..324455+ (Tribonema minus UTEX_B_3156 )back to top |