mRNA_8272 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164944
Unique NamemRNA_8272
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: A0A835YWQ3_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWQ3_9STRA)

HSP 1 Score: 516 bits (1329), Expect = 1.070e-184
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 1
Query:    1 MQVDRYLRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVEKLREGVATTDGVFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDENLQPGQCAPVVGSALTWAQWLRRTCEKKLLVQGPHPRIRRRMARKAEGGXXXXXXXXXETAIETVIAQQL 804
            MQVDRYLRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVEKLREGVATTDGVFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDENLQPGQCAPVVGSALTWAQWLRRTCEKKLLVQGPHPRIRRRMARKAEGGXXXXXXXXXETAIETVIAQQL
Sbjct:    1 MQVDRYLRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVEKLREGVATTDGVFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDENLQPGQCAPVVGSALTWAQWLRRTCEKKLLVQGPHPRIRRRMARKAEGGXXXXXXXXXETAIETVIAQQL 268          
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: D8LMI5_ECTSI (S4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMI5_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.030e-72
Identity = 124/217 (57.14%), Postives = 157/217 (72.35%), Query Frame = 1
Query:    4 QVDRYLRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVE-PAEGMPPPGDELVEKLREGVATTDGVFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDENLQPGQCAPVVGSALTWAQ 651
            +VD  +R+GRV V+G VV+    K      + V+G+V   +PLL+AFHKPKG+++TLSDDWDR  L DVLP + L + HPVGRLDADSSGLLLLSSDG LTH+LL P+F+VEREY   V+ P EG  P GD LV  L+EG+ T DGV+  +V  I+G  V ++V+EGK RMVRRMLANAGYPV+EL R RYG I++ + L  G+  PV G AL WA+
Sbjct:  152 EVDTLVRRGRVKVDGAVVKSPKTKLPVDCVIEVNGEVHGPVPLLVAFHKPKGVITTLSDDWDREDLSDVLPKSLLLKHHPVGRLDADSSGLLLLSSDGALTHRLLNPRFEVEREYVASVDVPPEGEEP-GDSLVTALKEGITTADGVYKADVPAISGRDVGVVVREGKNRMVRRMLANAGYPVLELRRERYGKILLGD-LPEGEHVPVSGDALEWAR 366          
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: A0A5B8XVG1_9DELT (Pseudouridine synthase n=1 Tax=Bradymonadales bacterium V1718 TaxID=2600177 RepID=A0A5B8XVG1_9DELT)

HSP 1 Score: 185 bits (469), Expect = 1.280e-54
Identity = 104/213 (48.83%), Postives = 133/213 (62.44%), Query Frame = 1
Query:   13 RYLRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDE--LVEKLREGVATTDGVFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDENLQPGQCAPVVGSALTW 645
            R  R+GRV V G VVR  + K   ++E+ VDG+  E  PL   +HKP G+ S+++D+W R  L++VLP  +   MHPVGRLDAD+SGLLL SSDG LT KLL PK +V R YE LVE       P DE  L   L  GV T +GVF   + +++G  + L V EGKYRMVRR+LAN+G+PVV+LHR  YG   +  NL+PG       S   W
Sbjct:   21 RLCRQGRVRVGGMVVRDPSQKVDGSLEVLVDGEAYEEAPLFAIYHKPVGVQSSMADNWGREDLQEVLPEAWQSVMHPVGRLDADTSGLLLFSSDGKLTQKLLHPKHEVPRVYEALVEN------PVDEARLRTTLAAGVETAEGVFSAGLLSVDGQTLRLEVSEGKYRMVRRILANSGHPVVKLHRVSYGGFELG-NLEPGALRACEESEWEW 226          
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: A0A7S2SSU6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSU6_9STRA)

HSP 1 Score: 180 bits (457), Expect = 4.710e-52
Identity = 100/221 (45.25%), Postives = 140/221 (63.35%), Query Frame = 1
Query:    4 QVDRYLRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQ-RMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVEKLRE----GVATTDGVFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDE-NLQPGQCAPVVGSALTWA 648
            + D  +++GRVSV+G ++R    +   +  + +DG+ L   PLL+A +KPKG+ ST+ D   R  L +  P+ + + ++HPVGRLDAD++GLLL S DG LT  LL P+ +VEREY   V+        GD L   LRE    GV T+DG FP E+      +V ++VKEGKYRMVRR+LAN G PVVELHR RYG + +++  +  G+ APV G A+ WA
Sbjct:   18 ECDTLVKRGRVSVDGEILRSPTRRVPASSRIHLDGEELLPTPLLMALYKPKGVHSTMGDPLGRPSLLEATPSNWKRMQLHPVGRLDADTTGLLLFSRDGQLTQYLLHPRNEVEREYVAQVD--------GDALRGDLREVLAAGVETSDGTFPAELVEQAEGRVRVMVKEGKYRMVRRLLANVGLPVVELHRVRYGPVRLEDLGIDVGEWAPVTGEAVEWA 230          
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: A0A2F0ALH2_9DELT (Pseudouridine synthase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2F0ALH2_9DELT)

HSP 1 Score: 157 bits (396), Expect = 1.440e-43
Identity = 87/196 (44.39%), Postives = 121/196 (61.73%), Query Frame = 1
Query:    7 VDRYLRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVEKLREGVATTDGVFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDE 594
            V + ++ GRVSV+G        K  D   +  DG  +  LPLL+ +HKP  +V T+ D + R+ L   +P ++  R HPVGRLD D+SGLLL S  G LT   L PK  V R Y  +V+   G+P   + LV++L EGV T+ G FP +V  ++G +V L V EGK+RMVRR+LAN G+PV++LHR RYG I + +
Sbjct:   21 VQKAIKAGRVSVDGQAQTDPKFKVSDAQIIVFDGIEIGVLPLLLIWHKPIDVVCTMRDPFGRSDLSGAIPESFQGRFHPVGRLDRDTSGLLLFSRSGPLTQWFLHPKRSVRRWYTAVVD---GLP--SNALVKQLAEGVETSLGTFPAQVHTLSGNEVILSVTEGKHRMVRRLLANCGHPVLDLHRFRYGPIELGD 211          
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: A0A7S2JZM0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZM0_9STRA)

HSP 1 Score: 155 bits (392), Expect = 9.680e-43
Identity = 92/208 (44.23%), Postives = 130/208 (62.50%), Query Frame = 1
Query:   43 NGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVL----PATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVEKLREGVATTDGVFPGEVTNI-NGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDENLQPGQCAPVVGSALTWAQ 651
            N  V++ G  K  +  +L VDG ++  +PLL+ +HKP  ++S + D+  R  L D L    P  +   MHPVGRLDAD+SGL+L SSDG LT +LL P+ +VE+EY   VE  EG     D+L E+L  GV TT+GV   ++ ++ +   V LIV+EGK+RMVRRMLAN G+PV+EL R R+G +V   +L+ G    +    L WA+
Sbjct:   46 NDIVIQKGDQKVPENAQLVVDGYIIPPIPLLLVYHKPTDVLSAMKDN-SRYCLGDALMEKSPLLFNAGMHPVGRLDADTSGLILFSSDGALTQRLLHPRHEVEKEYVATVETVEGEINE-DKLREQLSRGVETTEGVHTAQLLSVTDNDTVRLIVQEGKHRMVRRMLANCGFPVIELRRERHG-VVWLGDLEEGAFRDLNPEELEWAE 250          
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: A0A8J5XQ74_DIALT (PseudoU_synth_2 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XQ74_DIALT)

HSP 1 Score: 157 bits (398), Expect = 9.710e-43
Identity = 109/259 (42.08%), Postives = 139/259 (53.67%), Query Frame = 1
Query:    7 VDRYLRKGRVSVNGTVVRGGAHKFY--DTVELRVDGDVLEALP--LLIAFHKPKGIVSTLSDDWDRTHLKDVL---PATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVEKLREGVATTDGVFPGEVTNI---------------------NGLK-------------VSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMD-ENLQPGQCAPVVGSALTWAQWL 657
            V R LRKG V V+G   R GA K      V +  DG+ LE  P  LL+AFHKP G+ ST++D+  RT L   L   P  +   +HPVGRLDAD+SGLLL SS G LT +LL P+   E+EY  LV  A  +   G  L   L  GV TT+G     + ++                      GL+             + L V EGK+RMVRR+LANAG+PV+ LHR R+GD+V+D + L PG  A V G AL WA+ L
Sbjct:   69 VSRALRKGLVHVDGATERDGARKVALGGAVGVTFDGEPLELRPPPLLVAFHKPLGMHSTMADERGRTDLAAALVEQPPLWRDELHPVGRLDADTSGLLLFSSSGGLTQRLLHPRHGTEKEYAALVGGAP-IDDGGAALRATLAAGVQTTEGTHAAALLDVVVLDNDGARAAAEETARAAESAGLRRDDGAPPIQPVATLRLSVTEGKHRMVRRLLANAGHPVLALHRVRFGDVVLDPDELPPGASAVVGGDALAWAERL 326          
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: A0A0G4HMX6_9ALVE (S4 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HMX6_9ALVE)

HSP 1 Score: 154 bits (389), Expect = 5.790e-40
Identity = 91/226 (40.27%), Postives = 130/226 (57.52%), Query Frame = 1
Query:   19 LRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDW---DRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVEKLREGVATTDGVFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDENLQPGQCAPVVGSALTWAQWLRRTCEKKLLV 687
            +RK +V +NG+ +   A K      + VDG     +PL++ +HKP  +++    D     R  L D LP    + +HPVGRLD +++GLLLLS +G LT +LL PK  VEREY   VE    + P    LV++L  GV TT+G+F  ++ N     + LIV EGK+RMVRRMLANAGYPV  L R R+G I + + + PG+   +    L WA+ L  +   + +V
Sbjct:  125 IRKKKVKLNGSPILSAADKVPLDAIVEVDGTPTHPIPLMMVYHKPTNVLNEFGKDRLGSGRLTLSDTLPEYVQRSLHPVGRLDYETNGLLLLSREGVLTQRLLHPKRLVEREYVARVEM--DLDPL---LVQRLETGVQTTEGIFRAKIVNFRNDTMQLIVTEGKHRMVRRMLANAGYPVTSLTRIRFGGIQLGD-MAPGELRALEPDELAWAENLMESTYNQQMV 344          
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: R1DZZ0_EMIHU (PseudoU_synth_2 domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DZZ0_EMIHU)

HSP 1 Score: 146 bits (368), Expect = 1.220e-39
Identity = 92/200 (46.00%), Postives = 118/200 (59.00%), Query Frame = 1
Query:    7 VDRYLRKGRVSVNGTVV--------RGGAHKF-YDTVELRVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVE-KLREGVATTDG----VFPGEVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHR 564
            VDR +RKG V +              GG  K  +D   L VDG      PLL A+HKP G+VS++ DD  R  L  VLP  + + +HPVGRLDAD++GLLL   DG LTH+LL PK+ VEREY   VE A       +EL+  +L  GV T +     V  GE+ ++ G +V  + +EGKYRMVRR+LAN G+PVV LHR
Sbjct:   21 VDRLIRKGLVELENPETGSYEVVGKSGGKLKVPWDACPL-VDGFDYPPPPLLAAYHKPLGVVSSMKDDKGRPDLASVLPQPWQKALHPVGRLDADTTGLLLFCRDGDLTHRLLHPKYVVEREYVATVEGAVD-----EELLRGRLAAGVETVEEGEPFVVQGELLSVEGQRVRCVFREGKYRMVRRVLANCGHPVVALHR 214          
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Match: A0A7S1UHB6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHB6_9STRA)

HSP 1 Score: 147 bits (371), Expect = 7.710e-39
Identity = 105/269 (39.03%), Postives = 135/269 (50.19%), Query Frame = 1
Query:   19 LRKGRVSVNGTVVRGGAHKFYDTVELRVDG--------------DVLEALP-------LLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGTLTHKLLQPKFKVEREYECLV----------EP-------------AEGMPPPG--DELVEKLREGVATTDGVFPGEVTN-----------INGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDE-NLQPGQCAPVVGSALTWAQ 651
            +  G+V+V G  VR    KF   V++ V G                +++ P       LL+A+HKP G++STL D   R  L   LP    +R HPVGRLDAD+SGLLLLSSDG LTH+LL PK  VEREY   +          +P             A  M P G  +EL E+L  GV TT+G F   V +            N   V L V EGKYRMVRR+L NAG+ V+ LHR RYG I++++  L   +   V    L WA+
Sbjct:   53 IMHGKVTVAGAAVRSPKDKFDVDVDMEVTGLRRGTSEDAGPPRPQTVKSEPTDIKFSSLLLAYHKPVGVLSTLRDPQGRRDLTTELPGGIFRRFHPVGRLDADTSGLLLLSSDGDLTHRLLHPKHNVEREYIATIAWPRPEDFAADPTLTPTLTRVEGAAAPKMAPSGSLEELRERLAAGVVTTEGTFSARVVDGEEGWRNTKHGENVGWVQLAVAEGKYRMVRRVLMNAGHEVLGLHRVRYGGILLNDLRLPENEVTEVPQEMLGWAE 321          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164944 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YWQ3_9STRA1.070e-184100.00Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
D8LMI5_ECTSI1.030e-7257.14S4 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A5B8XVG1_9DELT1.280e-5448.83Pseudouridine synthase n=1 Tax=Bradymonadales bact... [more]
A0A7S2SSU6_9STRA4.710e-5245.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2F0ALH2_9DELT1.440e-4344.39Pseudouridine synthase n=1 Tax=Myxococcales bacter... [more]
A0A7S2JZM0_9STRA9.680e-4344.23Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A8J5XQ74_DIALT9.710e-4342.08PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A0G4HMX6_9ALVE5.790e-4040.27S4 domain-containing protein n=1 Tax=Chromera veli... [more]
R1DZZ0_EMIHU1.220e-3946.00PseudoU_synth_2 domain-containing protein (Fragmen... [more]
A0A7S1UHB6_9STRA7.710e-3939.03Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_34contigContig_34:321747..324455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164944|e_gw1.34.103.1
Descriptionenzyme-directed rRNA pseudouridine synthesis
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1187@1|root,2QT4T@2759|Eukaryota
Evalue1.69e-73
Seed ortholog2880.D8LMI5
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPseudouridine synthase, RsuA/RluB/C/D/E/F
Ec32 orthologEc-05_002890.1
TranscriptId165266
TrackFilteredModels1
ProteinId164944
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164944gene_8272Tribonema minus UTEX_B_3156 geneContig_34 321747..324455 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8272_1exon_8272_1Tribonema minus UTEX_B_3156 exonContig_34 321747..321950 +
exon_8272_2exon_8272_2Tribonema minus UTEX_B_3156 exonContig_34 322363..322595 +
exon_8272_3exon_8272_3Tribonema minus UTEX_B_3156 exonContig_34 323506..323589 +
exon_8272_4exon_8272_4Tribonema minus UTEX_B_3156 exonContig_34 324170..324455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8272CDS_8272Tribonema minus UTEX_B_3156 CDSContig_34 321747..321950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164944Trimin1|164944|e_gw1.34.103.1Tribonema minus UTEX_B_3156 polypeptideContig_34 321747..324455 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8272 ID=mRNA_8272|Name=jgi.p|Trimin1|164944|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=807bp|location=Sequence derived from alignment at Contig_34:321747..324455+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTGGACAGGTATCTACGAAAGGGGCGCGTAAGCGTCAACGGCAC
CGTCGTCAGAGGCGGCGCCCACAAGTTCTATGATACGGTGGAGCTTCGCG
TCGATGGTGACGTGCTTGAGGCCCTGCCGCTGCTGATTGCGTTCCACAAG
CCCAAGGGCATTGTGTCTACGCTCAGCGATGACTGGGACAGGACCCATCT
CAAGGACGTGCTGCCGGCAACGTACCTGCAGCGCATGCACCCCGTCGGCC
GCCTCGACGCCGACTCCAGTGGGCTGCTGCTGCTCAGCAGCGACGGCACC
CTGACGCACAAGCTGCTGCAGCCCAAGTTCAAGGTGGAGCGCGAGTACGA
GTGCCTTGTGGAGCCAGCAGAGGGCATGCCGCCGCCGGGGGACGAGCTTG
TGGAGAAGCTGCGCGAGGGCGTTGCCACTACCGACGGGGTCTTCCCAGGT
GAGGTGACCAACATCAACGGCCTCAAAGTCAGCCTAATCGTGAAGGAGGG
GAAGTACCGCATGGTCAGAAGAATGCTAGCAAACGCCGGGTACCCTGTGG
TTGAACTCCACAGGACGCGCTACGGCGACATTGTGATGGACGAGAACCTG
CAGCCGGGACAGTGCGCGCCGGTGGTCGGAAGTGCGCTGACTTGGGCGCA
GTGGCTGAGGCGCACATGCGAAAAGAAGCTCCTGGTGCAGGGGCCCCACC
CCAGAATCCGCCGCCGCATGGCAAGGAAGGCGGAGGGGGGGGCACAGGGG
GGGGCCGAGGAGGAAGGCGAGACTGCCATTGAGACTGTCATTGCGCAGCA
GTTGTAG
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protein sequence of jgi.p|Trimin1|164944

>Trimin1|164944|e_gw1.34.103.1 ID=Trimin1|164944|e_gw1.34.103.1|Name=jgi.p|Trimin1|164944|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=269bp
MQVDRYLRKGRVSVNGTVVRGGAHKFYDTVELRVDGDVLEALPLLIAFHK
PKGIVSTLSDDWDRTHLKDVLPATYLQRMHPVGRLDADSSGLLLLSSDGT
LTHKLLQPKFKVEREYECLVEPAEGMPPPGDELVEKLREGVATTDGVFPG
EVTNINGLKVSLIVKEGKYRMVRRMLANAGYPVVELHRTRYGDIVMDENL
QPGQCAPVVGSALTWAQWLRRTCEKKLLVQGPHPRIRRRMARKAEGGAQG
GAEEEGETAIETVIAQQL*
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mRNA from alignment at Contig_34:321747..324455+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8272 ID=mRNA_8272|Name=jgi.p|Trimin1|164944|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2709bp|location=Sequence derived from alignment at Contig_34:321747..324455+ (Tribonema minus UTEX_B_3156 )
ATGCAGGTGGACAGGTATCTACGAAAGGGGCGCGTAAGCGTCAACGGCAC CGTCGTCAGAGGCGGCGCCCACAAGTTCTATGATACGGTGGAGCTTCGCG TCGATGGTGACGTGCTTGAGGCCCTGCCGCTGCTGATTGCGTTCCACAAG CCCAAGGGCATTGTGTCTACGCTCAGCGATGACTGGGACAGGACCCATCT CAAGGTGAGCTGCAGCTGAGTGATCGTTTTGGCTTGCTGTCGATGCAGTG GTCGAGCCATGCTGCAGAATGCTGCGACACACACATCATGAGAGCTGGGT CGATTCAAATCATGTATTTCAGCGGCGACCAAAGCTGAGGCTTTAGCAAT GGACTCGATATCTTGGAATCCATTCGACCTGCCTCAACCCTAACCAACCC TTGATGCCAACTTCAACCTTCCCACAGGACGTGCTGCCGGCGATATACCT GCAGCACATGCACCCCGCCGGCCGCCTCGACGCCGACTCCAGCAGTAGCA ATGCCATTGATTTGGTTCATGTTCATTGAATGGACCTGATGTTGAGACTC GATATTGAATGCATTCAACCTGCCTCAACACACGTAACCCTGATGCCAAC TTCAATTCTTTACCAGGACGTGCTGCCGGCAACGTACCTGCAGCGCATGC ACCCCGTCGGCCGCCTCGACGCCGACTCCAGTGGGCTGCTGCTGCTCAGC AGCGACGGCACCCTGACGCACAAGCTGCTGCAGCCCAAGTTCAAGGTGGA GCGCGAGTACGAGTGCCTTGTGGAGCCAGCAGAGGGCATGCCGCCGCCGG GGGACGAGCTTGTGGAGAAGCTGCGCGAGGGCGTTGCCACTACCGACGGG TGAGTGCACATATTACATACTTACCTACCAGTGTGTAGACTTGGAGATTA CATGAACTTGAACTTGTCTAGTGGAGTACGCATCGTAGCTTGGCACTGCG TTGTCGTCAAACGGCACGCCTCCGCCTGGGGAGGAGCTTGTGGACAAGCT GCGTGGGGGCGTTGCCACTACCGACGGGTGAGTGCACGTGTTGCGTACCT ATTGTACCGGTGTGCATACCTAGGAGACTACACGAACTTAAACTTGGCTT GTGGAGTATGCACGGCGCTGCGCAGTCATCGAAGGGCATGCCGCCGCCGG GGGAGGAGCTAGTGGAAAAGTTGCGCAGGGGCGTTGTCACTACCTACGGG TCAGTGCACATGTTGCACACCTACCAGCATGTATACCTAGAAGACTGTTG AGCATATTCAGTGGAGTAAGCATCGTAGCACGGCACTGCGTAGTCGTCAA GCCGCCGCCGGGCGCGGTGCTTGTGGATAAGCTGCGCGGGGGCGTTGCCA CAACTGACGGGTGAGCGTTGCCTACCTGTGTACCAGTGTGTAGACGCAGA AGATCGCAGGCACTTGACCTTTTACTGCTGTGAAATATGCATCGTATCAC CGCACTGTGTAGTCGTCAGAGGGCATGCCGCCGCCGTGTAGTCGTCAGAG GGCATGCCGCCGCCGGGGGAGGAGTTTGTCATGCAGCTGCGCGGGCGGTG ATTCTGCTGTATGCATGTACAGTGTGTTTTCAGAAATATGCATTATTGCA CTTGCGTACATGACCTTGTGCAGCACCTGTCGTCACGGCATGTCCAATGA TTCGAAGAGGCAATATCTGATATGCTTTTCACTACCGGTATCGGATACGC CTTGGCTCAGTGCCAACAGATTGTAACATATCCACCCCCCTTGGTTGTGG CCAATGCAGGGTCTTCCCAGGTGAGGTGACCAACATCAACGGCCTCAAAG TCAGCCTAATCGTGAAGGAGGGGAAGTACCGCATGGTCAGAAGGTGATTG CTGGTGACCTCCCAACTTCAAATCGTTGATTTGTATTTTGCATGAGCTAA ATAAGCTCGCTGTTATGTTAGCACTGCTTGCGATAAAGGCCCCTAGTAGG GGGGACGATGATTTTGTCTGATACCAGTTATGAGCACTGCACGCAACCTG AGCACTGCTGTTGTTGTCATCACTCGCTCCAGGCTAAGACTGTGCAACTA TGCGAGTAGGTTGTCAGCCATTGTGAGCACTGCTGCGTGATGACAGCGAT GAGATGCATGTCAGTGCTTGCCGGCTCATTGGCATGTGCAGGTCAGGTGT GCCAGTGCTGACTTGCAAGTCCGCATGACAGTCATACCTGTGAATGCATG CTTGTTGAGACCTGCAATGTTAAGCCCGCTCAGCAGCAATCATCACTTCG CTGCAGCAGCATGCATCCCCCCCCCCCCCCCGGCTCCTGAAGCAGGGCTC ATCATCCCCCCTGCAACAGTGCTCAGCATTTCCCCTTCAGCAGCGCTCAA CAAACCCCCTTCAGCAGTGCCCATCAGCGCTCACCATCACCCCCCCTGTG CCCCCCCCCCCCCTTGCCCTCAGAATGCTAGCAAACGCCGGGTACCCTGT GGTTGAACTCCACAGGACGCGCTACGGCGACATTGTGATGGACGAGAACC TGCAGCCGGGACAGTGCGCGCCGGTGGTCGGAAGTGCGCTGACTTGGGCG CAGTGGCTGAGGCGCACATGCGAAAAGAAGCTCCTGGTGCAGGGGCCCCA CCCCAGAATCCGCCGCCGCATGGCAAGGAAGGCGGAGGGGGGGGCACAGG GGGGGGCCGAGGAGGAAGGCGAGACTGCCATTGAGACTGTCATTGCGCAG CAGTTGTAG
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Coding sequence (CDS) from alignment at Contig_34:321747..324455+

>mRNA_8272 ID=mRNA_8272|Name=jgi.p|Trimin1|164944|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=807bp|location=Sequence derived from alignment at Contig_34:321747..324455+ (Tribonema minus UTEX_B_3156 )
ATGCAGGTGGACAGGTATCTACGAAAGGGGCGCGTAAGCGTCAACGGCAC
CGTCGTCAGAGGCGGCGCCCACAAGTTCTATGATACGGTGGAGCTTCGCG
TCGATGGTGACGTGCTTGAGGCCCTGCCGCTGCTGATTGCGTTCCACAAG
CCCAAGGGCATTGTGTCTACGCTCAGCGATGACTGGGACAGGACCCATCT
CAAGGACGTGCTGCCGGCAACGTACCTGCAGCGCATGCACCCCGTCGGCC
GCCTCGACGCCGACTCCAGTGGGCTGCTGCTGCTCAGCAGCGACGGCACC
CTGACGCACAAGCTGCTGCAGCCCAAGTTCAAGGTGGAGCGCGAGTACGA
GTGCCTTGTGGAGCCAGCAGAGGGCATGCCGCCGCCGGGGGACGAGCTTG
TGGAGAAGCTGCGCGAGGGCGTTGCCACTACCGACGGGGTCTTCCCAGGT
GAGGTGACCAACATCAACGGCCTCAAAGTCAGCCTAATCGTGAAGGAGGG
GAAGTACCGCATGGTCAGAAGAATGCTAGCAAACGCCGGGTACCCTGTGG
TTGAACTCCACAGGACGCGCTACGGCGACATTGTGATGGACGAGAACCTG
CAGCCGGGACAGTGCGCGCCGGTGGTCGGAAGTGCGCTGACTTGGGCGCA
GTGGCTGAGGCGCACATGCGAAAAGAAGCTCCTGGTGCAGGGGCCCCACC
CCAGAATCCGCCGCCGCATGGCAAGGAAGGCGGAGGGGGGGGCACAGGGG
GGGGCCGAGGAGGAAGGCGAGACTGCCATTGAGACTGTCATTGCGCAGCA
GTTGTAG
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