mRNA_8249 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152900
Unique NamemRNA_8249
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|152900 vs. uniprot
Match: A0A835YVD1_9STRA (Phosphatase 2C-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVD1_9STRA)

HSP 1 Score: 583 bits (1502), Expect = 3.070e-209
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 1
Query:    1 LAQQGIAVGVCSVKGKRPYMEDEYRVLAHLETTPGAGAWGLDEGGDGRGAGGGGGLRTAFFGVFDGHAGGRCSRALTQTLAQCVARDPEFQRGGDLSTAIARGFARANADFLRKAERFNANDGSTAVTAFLRGRTLTVANVGDSRAVLVCAGGRVVALSFDHKPNRPEERRRIQACGGRVIFSFGVPRVNGILAVSRAFGDRNMRGAINAEPELQVRNLEVGDKFLILATDGVWDVVSSAECAAMAHQCVLQQGMTPQQCSAVLVSVAMQRGSLDNATALVVDLRGIWGASAXXXXXXXXXXXXXXXXXXXXXPLLLQRQLSA 969
            LAQQGIAVGVCSVKGKRPYMEDEYRVLAHLETTPGAGAWGLDEGGDGRGAGGGGGLRTAFFGVFDGHAGGRCSRALTQTLAQCVARDPEFQRGGDLSTAIARGFARANADFLRKAERFNANDGSTAVTAFLRGRTLTVANVGDSRAVLVCAGGRVVALSFDHKPNRPEERRRIQACGGRVIFSFGVPRVNGILAVSRAFGDRNMRGAINAEPELQVRNLEVGDKFLILATDGVWDVVSSAECAAMAHQCVLQQGMTPQQCSAVLVSVAMQRGSLDNATALVVDLRGIWGASAXXXXXXXXXXXXXXXXXXXXXPLLLQRQLSA
Sbjct:    1 LAQQGIAVGVCSVKGKRPYMEDEYRVLAHLETTPGAGAWGLDEGGDGRGAGGGGGLRTAFFGVFDGHAGGRCSRALTQTLAQCVARDPEFQRGGDLSTAIARGFARANADFLRKAERFNANDGSTAVTAFLRGRTLTVANVGDSRAVLVCAGGRVVALSFDHKPNRPEERRRIQACGGRVIFSFGVPRVNGILAVSRAFGDRNMRGAINAEPELQVRNLEVGDKFLILATDGVWDVVSSAECAAMAHQCVLQQGMTPQQCSAVLVSVAMQRGSLDNATALVVDLRGIWGASAXXXXXXXXXXXXXXXXXXXXXPLLLQRQLSA 323          
BLAST of jgi.p|Trimin1|152900 vs. uniprot
Match: D7FP40_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP40_ECTSI)

HSP 1 Score: 308 bits (788), Expect = 8.320e-99
Identity = 164/289 (56.75%), Postives = 214/289 (74.05%), Query Frame = 1
Query:    1 LAQQGIAVGVCSVKGKRPYMEDEYRVLAHLETTPGAGAWGLDEGGDGRGAGGGGGLRTAFFGVFDGHAGGRCSRALTQTLAQCVARDPEFQRGGDLSTAIARGFARANADFLRKAERFNAN-DGSTAVTAFLRGRTLTVANVGDSRAVLVCAGGRVVALSFDHKPNRPEERRRIQACGGRVIFSFGVPRVNGILAVSRAFGDRNMRGAINAEPELQVRNLEVGDKFLILATDGVWDVVSSAECAAMAHQCVLQQGMTPQQCSAVLVSVAMQRGSLDNATALVVDLRGIW 864
            L + G++ GV ++KG RPYMEDE++V+ +LE   GA      EG D           T FFG+FDGHAGGRCS+ALT  L Q V+R+P+F    +L +A+ +GF RANA+FLRK    + + +GSTAVTAF+RGR L V NVGDSRAVL C+ GR + +S DHKPN+PEERRRIQA GGRV++SFGVPRVNGILAVSRAFGDRNM+GA+NAEP+++ R+LE  D FL+LATDG+WDV++S E   + +      G  PQ CS +L ++A+++GSLDN +A+VVDLRG+W
Sbjct:   84 LFEHGLSFGVSTLKGHRPYMEDEFKVIPNLELNGGASDLFRREGRDME--------PTHFFGMFDGHAGGRCSKALTHILGQTVSREPDFSL--ELQSAVHKGFLRANAEFLRKLLSSSLDREGSTAVTAFVRGRRLVVGNVGDSRAVL-CSDGRALPMSSDHKPNKPEERRRIQALGGRVVYSFGVPRVNGILAVSRAFGDRNMKGAVNAEPDVRERSLERHDDFLVLATDGLWDVMTSQEVCNIVYNSAPDVG--PQGCSELLTTMALRKGSLDNTSAMVVDLRGLW 359          
BLAST of jgi.p|Trimin1|152900 vs. uniprot
Match: A0A7S2XYD4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYD4_9STRA)

HSP 1 Score: 249 bits (637), Expect = 4.710e-79
Identity = 133/252 (52.78%), Postives = 175/252 (69.44%), Query Frame = 1
Query:   37 VKGKRPYMEDEYRVLAHLETTPGAGAWGLDEGGDGRGAGGGGGLRTAFFGVFDGHAGGRCSRALTQTLAQCVARDPEFQRGGDLSTAIARGFARANADFLRKAERFNANDGSTAVTAFLRGRTLTVANVGDSRAVLVCAGGRVVALSFDHKPNRPEERRRIQACGGRVIFSFGVPRVNGILAVSRAFGDRNMRGAINAEPELQVRNLEVGDKFLILATDGVWDVVSSAECAAMAHQCVLQQGMTPQQCSAVL 792
            VKG+RPYMEDE+RV+  +E   GA            G GGGGG  T  F VFDGHAG RCS+A++Q+L  CVAR+P+F  G DL+ A  +G  +ANA+++R+AER+N  DGST + AFLRGR L VANVGDSRAVL  AG + + +S DHKPNRPEERRRI A GG V  S GV RVNG+LAVSRAFGD+N+R  I  + E++ ++L+  D FLIL +DG+WD++++ E   +  + +   G  PQ C+ +L
Sbjct:    1 VKGRRPYMEDEHRVIPRMEALEGAST----------GTGGGGGT-TQLFAVFDGHAGARCSKAVSQSLGPCVAREPDF--GPDLAAAAVKGCVKANAEWMRRAERYNMCDGSTGIMAFLRGRRLVVANVGDSRAVLCGAGNKAIPMSRDHKPNRPEERRRIAAAGGHVTVSMGVHRVNGVLAVSRAFGDKNLRQTIRPDAEIKEKDLDETDSFLILGSDGLWDMIANQEACNIVARALPNLG--PQGCAEML 237          
BLAST of jgi.p|Trimin1|152900 vs. uniprot
Match: A0A7S3GX32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GX32_9STRA)

HSP 1 Score: 216 bits (550), Expect = 8.250e-64
Identity = 118/283 (41.70%), Postives = 166/283 (58.66%), Query Frame = 1
Query:    4 AQQGIAVGVCSVKGKRPYMEDEYRVLAHLETTPGAGAWGLDEGGDGRGAGGGGGLRTAFFGVFDGHAGGRCSRALTQTLAQCVARDPEFQRGGDLSTAIARGFARANADFLRKAERFNANDGSTAVTAFLRGRTLTVANVGDSRAVLVCAGGRVVALSFDHKPNRPEERRRIQACGGRVIFSFGVPRVNGILAVSRAFGDRNMRGAINAEPELQVRNLEVGDKFLILATDGVWDVVSSAECAAMAHQCVLQQGMTPQQCSAVLVSVAMQRGSLDNATALVVDL 852
            A  G+  GVCS +GKRPY EDEY +  +L      G    +             + T F+G+FDGHAGGRCS  +  +L   +A DP F    +L  A+ R F   N  FL+ AE+   +DGST +TA +R   + VANVGD RA+++ +GGR + +S D KP  PEE++RI A GG V++  GV RVN +LAVSRAFG+R +R  I  + E+  R L   D +L++A+DG+WDV+ + +   + +    Q    PQ  +  LV  A+QRGS+DN T +VV L
Sbjct:   53 ANSGLISGVCSQQGKRPYQEDEYAIRPYLNQASPPGEQDTN-------------IETHFYGLFDGHAGGRCSNYVAGSLPNVLAEDPSFFT--NLPQALKRSFHTTNEQFLKVAEKMKYHDGSTGITAVVRDSKVLVANVGDCRALII-SGGRPIQMSIDQKPTNPEEQKRITALGGTVVYCMGVARVNRVLAVSRAFGNRTLRSVIRPDAEMMQRELTKDDDYLVMASDGLWDVLKNKDVCDVCYSPFTQ--CNPQSIAEELVHAALQRGSMDNVTCIVVRL 317          
BLAST of jgi.p|Trimin1|152900 vs. uniprot
Match: A0A1W0A3K5_9STRA (Phosphatase 2C n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3K5_9STRA)

HSP 1 Score: 207 bits (528), Expect = 3.300e-61
Identity = 122/277 (44.04%), Postives = 162/277 (58.48%), Query Frame = 1
Query:   25 GVCSVKGKRPYMEDEYRVLAHLETTPGAGAWGLDEGGDGRGAGGGGGLRTAFFGVFDGHAGGRCSRALTQTLAQCVARDPEFQRGGDLSTAIARGFARANADFLRKAERFNANDGSTAVTAFLRGRTLTVANVGDSRAVLVCAGGRVVALSFDHKPNRPEERRRIQACGGRVIFSFGVPRVNGILAVSRAFGDRNMRGAINAEPELQVRNLEVGDKFLILATDGVWDVVSSAECAAMAHQCVLQQGMTPQQCSAVLVSVAMQRGSLDNATALVVDLR 855
            GV  ++GKRPYMED +  +  L   P A                      +F+GVFDGH G   S    + L   + +DP +Q+      A+ +GF R +A++++ A R N +DG+TAVT   +G T+ VANVGDSRA+LV   G VVALS DHKPNR +ER R+   GG VIF +GV RV GILAVSRA GDR ++  + AEPE+        D F+ILA+DGVWDV+ + E A +A Q       + Q  S  ++  A QRGSLDN  A+V+DLR
Sbjct:   53 GVAEMQGKRPYMEDRFTAVGTLNGDPNA----------------------SFYGVFDGHGGDGASEYCAEMLCDNIMQDPMYQQYP--KEALTKGFLRTDAEYVQYANRRNRDDGTTAVTVLAKGNTIYVANVGDSRAILVKKNGEVVALSTDHKPNRADERERVTNMGGHVIF-WGVWRVEGILAVSRAIGDRMLKPYVIAEPEITQHERSDDDAFIILASDGVWDVLPNDEVARLALQ-----AESVQLASKTIMEYAYQRGSLDNICAMVIDLR 299          
BLAST of jgi.p|Trimin1|152900 vs. uniprot
Match: A0A6G0WTE1_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTE1_9STRA)

HSP 1 Score: 207 bits (526), Expect = 9.130e-61
Identity = 119/276 (43.12%), Postives = 164/276 (59.42%), Query Frame = 1
Query:   25 GVCSVKGKRPYMEDEYRVLAHLETTPGAGAWGLDEGGDGRGAGGGGGLRTAFFGVFDGHAGGRCSRALTQTLAQCVARDPEFQRGGDLSTAIARGFARANADFLRKAERFNANDGSTAVTAFLRGRTLTVANVGDSRAVLVCAGGRVVALSFDHKPNRPEERRRIQACGGRVIFSFGVPRVNGILAVSRAFGDRNMRGAINAEPELQVRNLEVGDKFLILATDGVWDVVSSAECAAMAHQCVLQQGMTPQQCSAVLVSVAMQRGSLDNATALVVDL 852
            GV  ++GKRPYMED Y V   L              GD            +F+GVFDGH G   S    + L   +  DP +    D   A+ RGF + ++D+++ A+R++ +DG+TA+   ++G T+ VANVGDSRAVL+   G  VALS DHKPNR +ER R+   GG VIF +GV RV GILAVSRA GDR ++  + AEPE+        D+ ++LA+DGVWDV+S+AE A +     ++Q  +PQ  +  ++  A QRGSLDN  ALV+DL
Sbjct:   63 GVAEMQGKRPYMEDRYAVAGKLN-------------GD---------AFASFYGVFDGHGGDGASEYCVEALCNNITSDPAYP--SDPKQALTRGFIKTDSDYIKLADRYHKDDGTTAIGVLVQGNTIHVANVGDSRAVLIKKNGDAVALSVDHKPNRQDERERVNNMGGHVIF-WGVWRVEGILAVSRAIGDRMLKPYVIAEPEIVDIQRTDADQAIVLASDGVWDVLSNAEVARL-----VRQSESPQLAAKTIMEYAYQRGSLDNICALVIDL 308          
BLAST of jgi.p|Trimin1|152900 vs. uniprot
Match: A0A024TH63_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TH63_9STRA)

HSP 1 Score: 205 bits (522), Expect = 4.250e-60
Identity = 117/276 (42.39%), Postives = 162/276 (58.70%), Query Frame = 1
Query:   25 GVCSVKGKRPYMEDEYRVLAHLETTPGAGAWGLDEGGDGRGAGGGGGLRTAFFGVFDGHAGGRCSRALTQTLAQCVARDPEFQRGGDLSTAIARGFARANADFLRKAERFNANDGSTAVTAFLRGRTLTVANVGDSRAVLVCAGGRVVALSFDHKPNRPEERRRIQACGGRVIFSFGVPRVNGILAVSRAFGDRNMRGAINAEPELQVRNLEVGDKFLILATDGVWDVVSSAECAAMAHQCVLQQGMTPQQCSAVLVSVAMQRGSLDNATALVVDL 852
            GV  ++GKRPYMED + V+  L   P    W                  + F+GVFDGH G   S     +L   +  DP F    D   A++RGF + + D+++ A+R+N +DG+TA+   +RG  +  ANVGDSRAVL+   G  V LS DHKPNRP+ER R+ + GG VIF +GV RV GILAVSRA GDR ++  + AEPE+        D+ ++LA+DGVWDV+S+++ A +     + Q  TPQ  +  ++  + QRGS DN  ALVVDL
Sbjct:   59 GVSEMQGKRPYMEDRHTVVGTLNGDP----W------------------STFYGVFDGHGGDGASEYCVASLCSNITADPAFAH--DPKLALSRGFVKTDKDYIQLADRYNKDDGTTAIGVLVRGDAIYAANVGDSRAVLIKKNGDAVPLSSDHKPNRPDERERVNSMGGHVIF-WGVWRVEGILAVSRAIGDRMLKPYVIAEPEIVETTRSDEDQCIVLASDGVWDVLSNSDVARL-----VLQSETPQLAAKTIMEYSFQRGSQDNICALVVDL 304          
BLAST of jgi.p|Trimin1|152900 vs. uniprot
Match: A0A6A4Y8K2_9STRA (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4Y8K2_9STRA)

HSP 1 Score: 203 bits (517), Expect = 6.080e-60
Identity = 123/276 (44.57%), Postives = 160/276 (57.97%), Query Frame = 1
Query:   25 GVCSVKGKRPYMEDEYRVLAHLETTPGAGAWGLDEGGDGRGAGGGGGLRTAFFGVFDGHAGGRCSRALTQTLAQCVARDPEFQRGGDLSTAIARGFARANADFLRKAERFNANDGSTAVTAFLRGRTLTVANVGDSRAVLVCAGGRVVALSFDHKPNRPEERRRIQACGGRVIFSFGVPRVNGILAVSRAFGDRNMRGAINAEPELQVRNLEVGDKFLILATDGVWDVVSSAECAAMAHQCVLQQGMTPQQCSAVLVSVAMQRGSLDNATALVVDL 852
            GV  ++GKRPYMED + V+  L              GD            +F+GVFDGH G   S      L   V  D  F    +   A+ RGF + + D+++ A+R N +DG+TAV A +RG T+ VAN GDSRA+L+   G VVALS DHKPNRP+ER R+   GG VIF +GV RV GILAVSRA GDR ++  + AEPE+        D  ++LA+DGVWDV+S+AE A +A Q       + Q  +  ++  A QRGSLDN  ALVVDL
Sbjct:   20 GVAEMQGKRPYMEDRHTVVGTLN-------------GD---------AAISFYGVFDGHGGDGASEYCVDYLCANVTSDVAF--ASNPKQALTRGFIKTDKDYIKVADRTNKDDGTTAVAALVRGNTIFVANAGDSRAILIKKSGDVVALSSDHKPNRPDERERVNNMGGHVIF-WGVWRVEGILAVSRAIGDRMLKPYVIAEPEITETQRTDDDHCMVLASDGVWDVLSNAEVARLAVQ-----AESTQLAAKTIMEYAYQRGSLDNICALVVDL 265          
BLAST of jgi.p|Trimin1|152900 vs. uniprot
Match: A0A7S0Z2Q6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z2Q6_9CRYP)

HSP 1 Score: 204 bits (518), Expect = 3.330e-59
Identity = 124/287 (43.21%), Postives = 171/287 (59.58%), Query Frame = 1
Query:    4 AQQGI-AVGVCSVKGKRPYMEDEYRVLAHLETTPGAGAWGLDEGGDGRGAGGGGGLRTAFFGVFDGHAGGRCSRALTQTLAQCVARDPEFQRGGDLSTAIARGFARANADFLRKAERFNANDGSTAVTAFLRGRTLTVANVGDSRAVLVCAGGRVVALSFDHKPNRPEERRRIQACGGRVIFSFGVPRVNGILAVSRAFGDRNMRGAINAEPELQVRNLEVGDKFLILATDGVWDVVSSAECAAMAHQCVLQQGMTPQQCSAVLVSVAMQRGSLDNATALVVDLRGI 861
            A QG+   G   V+G+R YMED +    H +   G G   L                 +FFGVFDGH+G + +    + L Q V +  E  +G +   A+   F  A+A+FL +A R   +DGST  TA L G+ L VAN GDSR +L    G  V LS DHKP+RP ERRRI A GG+VIF  G  RVNG+LA SR FGD++++  ++AEPE+  R L+ GD+ L+LA+DG+WDV+++AE AA      L+    P++ + +L  VA++ GS+DN TALVVDLR +
Sbjct:   53 AAQGVPGFGYSLVQGRRDYMEDFF----HTQVDVGKGGEHL----------------RSFFGVFDGHSGKKAAAWAKERLQQLVWQ--ELDKGREPKAALRAAFLAADAEFLHRANREFLSDGSTVTTALLIGKDLYVANAGDSRTILCRGDGHAVPLSEDHKPDRPSERRRIVAAGGQVIF-VGCARVNGVLATSRGFGDKDLKKWVSAEPEVTHRTLQQGDEALVLASDGLWDVMTNAEVAAK-----LRHEPNPREAAKLLTRVALRLGSMDNVTALVVDLRAV 311          
BLAST of jgi.p|Trimin1|152900 vs. uniprot
Match: A0A5D6XLQ1_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLQ1_9STRA)

HSP 1 Score: 201 bits (511), Expect = 5.850e-59
Identity = 118/277 (42.60%), Postives = 166/277 (59.93%), Query Frame = 1
Query:   25 GVCSVKGKRPYMEDEYRVLAHLETTPGAGAWGLDEGGDGRGAGGGGGLRTAFFGVFDGHAGGRCSRALTQTLAQCVARDPEFQRGGDLSTAIARGFARANADFLRKAERFNANDGSTAVTAFLRGRTLTVANVGDSRAVLVCAGGRVVALSFDHKPNRPEERRRIQACGGRVIFSFGVPRVNGILAVSRAFGDRNMRGAINAEPELQVRNLEVGDKFLILATDGVWDVVSSAECAAMAHQCVLQQGMTPQQCSAVLVSVAMQRGSLDNATALVVDLR 855
            GV  ++G+RPYMED +  +A L              GD            +F+GVFDGH G   +    Q + Q V R+P F +  D  TA+ +GF R + ++L+ A R N+ DG+TAV    +G  L VA+ GDSRA+LV + G+V AL+ DHKPNRP+ERRR+Q  GG V+F +GV RV GILAVSRA GDR ++  + AEPE++       D+FL++A+DGVWD +++ + A +    VL+     Q  + VL+  A  RGSLDN   +V+DLR
Sbjct:   66 GVAQMQGRRPYMEDRHTAVADLN-------------GD---------ASQSFYGVFDGHGGDGAANYCVQAMCQNVIREPSFAK--DPVTALKKGFLRTDHEYLQIANRKNSEDGTTAVAVLAQGDALYVAHAGDSRAILVHSSGKVTALTSDHKPNRPDERRRVQDLGGSVVF-WGVWRVEGILAVSRAIGDRMLKPFVVAEPEVKELRRTSKDRFLVVASDGVWDTITNEDAAEI----VLKHD-DAQDAAKVLMDEAYARGSLDNICVMVIDLR 312          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152900 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVD1_9STRA3.070e-209100.00Phosphatase 2C-like domain-containing protein (Fra... [more]
D7FP40_ECTSI8.320e-9956.75PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S2XYD4_9STRA4.710e-7952.78Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3GX32_9STRA8.250e-6441.70Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A1W0A3K5_9STRA3.300e-6144.04Phosphatase 2C n=1 Tax=Thraustotheca clavata TaxID... [more]
A0A6G0WTE1_9STRA9.130e-6143.12PPM-type phosphatase domain-containing protein n=1... [more]
A0A024TH63_9STRA4.250e-6042.39PPM-type phosphatase domain-containing protein n=1... [more]
A0A6A4Y8K2_9STRA6.080e-6044.57PPM-type phosphatase domain-containing protein (Fr... [more]
A0A7S0Z2Q6_9CRYP3.330e-5943.21Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A5D6XLQ1_9STRA5.850e-5942.60PPM-type phosphatase domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_34contigContig_34:147245..149263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152900|gw1.34.139.1
BRITEko00000,ko01000,ko01009
KEGG koko:K01090,ko:K17506
EC3.1.3.16
Descriptionprotein serine/threonine phosphatase activity
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota
Evalue1.36e-99
Seed ortholog2880.D7FP40
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-10_002380.1
TranscriptId153222
TrackFilteredModels1
ProteinId152900
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152900gene_8249Tribonema minus UTEX_B_3156 geneContig_34 147245..149263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152900Trimin1|152900|gw1.34.139.1Tribonema minus UTEX_B_3156 polypeptideContig_34 147245..149263 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8249_2exon_8249_2Tribonema minus UTEX_B_3156 exonContig_34 147245..147691 -
exon_8249_1exon_8249_1Tribonema minus UTEX_B_3156 exonContig_34 148742..149263 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8249CDS_8249Tribonema minus UTEX_B_3156 CDSContig_34 148742..149263 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8249 ID=mRNA_8249|Name=jgi.p|Trimin1|152900|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=969bp|location=Sequence derived from alignment at Contig_34:147245..149263- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCGCGCAGCAGGGCATCGCCGTCGGTGTGTGCTCCGTCAAGGGCAAGCG
CCCCTACATGGAGGACGAGTACCGCGTGCTGGCACACCTGGAGACGACGC
CGGGGGCGGGGGCGTGGGGGCTAGACGAGGGGGGCGATGGGAGGGGGGCA
GGGGGAGGGGGGGGGTTGAGAACGGCCTTTTTCGGCGTCTTCGATGGGCA
CGCAGGCGGGCGCTGCAGCCGAGCGCTGACGCAGACGCTGGCGCAGTGCG
TGGCGCGCGACCCCGAGTTTCAGCGCGGCGGCGACCTGAGCACTGCCATC
GCACGCGGCTTTGCGCGCGCCAACGCTGACTTCCTGCGCAAGGCCGAGAG
GTTCAACGCGAATGACGGAAGCACGGCGGTGACGGCGTTTCTGAGGGGGC
GCACGCTGACGGTGGCGAACGTGGGGGATTCGCGCGCGGTGCTGGTGTGC
GCGGGGGGGCGCGTTGTGGCGCTGTCGTTTGACCACAAGCCCAACAGGCC
GGAGGAGCGGCGGCGCATACAGGCCTGCGGCGGGCGCGTGATCTTCAGCT
TTGGCGTGCCGCGCGTCAACGGCATCCTCGCAGTGAGCCGCGCCTTCGGC
GACAGAAACATGCGCGGGGCCATAAACGCAGAGCCCGAACTTCAAGTGCG
CAATCTTGAAGTCGGCGACAAGTTCCTCATCCTGGCGACCGACGGCGTGT
GGGACGTTGTCAGCAGCGCCGAGTGCGCGGCGATGGCGCACCAGTGCGTG
CTGCAGCAGGGGATGACGCCGCAGCAGTGCTCCGCGGTGCTGGTCTCCGT
CGCCATGCAGCGCGGCTCGCTCGACAACGCCACCGCGCTAGTCGTCGACC
TGCGGGGAATCTGGGGGGCGAGCGCTGCCGCTGCCGCTGCTGCGGGCGAC
GGCGGCGCGCTGCCCACCGCAACGAGCGCCGCCGCCGCGCCGCTGCTGCT
GCAGCGCCAGCTCAGCGCT
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protein sequence of jgi.p|Trimin1|152900

>Trimin1|152900|gw1.34.139.1 ID=Trimin1|152900|gw1.34.139.1|Name=jgi.p|Trimin1|152900|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=323bp
LAQQGIAVGVCSVKGKRPYMEDEYRVLAHLETTPGAGAWGLDEGGDGRGA
GGGGGLRTAFFGVFDGHAGGRCSRALTQTLAQCVARDPEFQRGGDLSTAI
ARGFARANADFLRKAERFNANDGSTAVTAFLRGRTLTVANVGDSRAVLVC
AGGRVVALSFDHKPNRPEERRRIQACGGRVIFSFGVPRVNGILAVSRAFG
DRNMRGAINAEPELQVRNLEVGDKFLILATDGVWDVVSSAECAAMAHQCV
LQQGMTPQQCSAVLVSVAMQRGSLDNATALVVDLRGIWGASAAAAAAAGD
GGALPTATSAAAAPLLLQRQLSA
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mRNA from alignment at Contig_34:147245..149263-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8249 ID=mRNA_8249|Name=jgi.p|Trimin1|152900|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2019bp|location=Sequence derived from alignment at Contig_34:147245..149263- (Tribonema minus UTEX_B_3156 )
CTCGCGCAGCAGGGCATCGCCGTCGGTGTGTGCTCCGTCAAGGGCAAGCG CCCCTACATGGAGGACGAGTACCGCGTGCTGGCACACCTGGAGACGACGC CGGGGGCGGGGGCGTGGGGGCTAGACGAGGGGGGCGATGGGAGGGGGGCA GGGGGAGGGGGGGGGTTGAGAACGGCCTTTTTCGGCGTCTTCGATGGGCA CGCAGGCGGGCGCTGCAGCCGAGCGCTGACGCAGACGCTGGCGCAGTGCG TGGCGCGCGACCCCGAGTTTCAGCGCGGCGGCGACCTGAGCACTGCCATC GCACGCGGCTTTGCGCGCGCCAACGCTGACTTCCTGCGCAAGGCCGAGAG GTTCAACGCGAATGACGGAAGCACGGCGGTGACGGCGTTTCTGAGGGGGC GCACGCTGACGGTGGCGAACGTGGGGGATTCGCGCGCGGTGCTGGTGTGC GCGGGGGGGCGCGTTGTGGCGCTGTCGTTTGACCACAAGCCCAACAGGCC GGAGGAGCGGCGGCGCATACAGGTGAGCGGGGGGGGGTAGGTAGGTAAGG GTATGTCATGTACGTACTGTGGGCCGTGGCTTTTGGTAGGGGCATGGTAT GAGACATGTGGCAACAAGCCCATTGGGCCAGAGGAGCGGCGGCGCATTCA GGTGAGCGGAAGGGGGTAGGTAGGTAAGGTAAAATTATGTGCTGTACTGC TGTGGGCTCTGTAGGTGCAGTAGATGGGTGAAGCAGGGGGTAGGTAAGGG TATGCGCTGTGCTGTGCTGTGCTGTGCGGTGCTGTGCTGTGATGTGCTAT GCTGTGGTGTGGAGGGTATGATATGTGATGCTGTGTGTGGTGGCGCTGTG AAGAACAAGAGATGTTGAGTCTTGGTACATGGTCAAGTAGAGGCAGGCAT AAGAGGTGGTGCTGAGGCTTAGTCCGAGCGAGGGTACAGTGGGCAGGTAG CTGCCCAACCCTAAGCCTAACCTTAACCCTTCTATTATAGGGCTGTGGAA CGGACACGGGATCTGCTTTCATTTTGCAGCATGGGAGCTTGCTGCTTGAC ATGTAGTCAGGGTTAGGATTAGGGTGAGATTGAAAGTCATCAATCTGTGC TGCATGTTCTGCAGCGCAATGCAGTGTGTAACTCTTCTAGGGGACGCAGG AGGCACCATCTACACACAACCATAATACCATCACATTCTATGCATGCATA CCATACAACCAGCTGACATCTATTTACCAGAGCGCATTCGTACGCCCTAA CTCAACGTCTCAAGCCGCAGGTCAGTTCTACATACTGTATAGTCTAGCAC GTCCATGTATAAACTACTCACCCTGCCCGTGATGTAAACACATACTTACA TACCCCATCCGACAGGCCTGCGGCGGGCGCGTCATCTTCAGCTGAGTCTG GTCTACCATCAACTGCTCAACAAATTGTATGACTCTAATCCAGGCATAAT GGGGCTGCCTACATACGTAAATACCATGCTCGTCCACACTTCAAGGTGCA AAAAAAGTCTACCAACCCCCCCCCTAGAGCACCCATGATATCCATACCTA CATACCCCACGCCATCCGCCAGGCCTGCGGCGGGCGCGTGATCTTCAGCT TTGGCGTGCCGCGCGTCAACGGCATCCTCGCAGTGAGCCGCGCCTTCGGC GACAGAAACATGCGCGGGGCCATAAACGCAGAGCCCGAACTTCAAGTGCG CAATCTTGAAGTCGGCGACAAGTTCCTCATCCTGGCGACCGACGGCGTGT GGGACGTTGTCAGCAGCGCCGAGTGCGCGGCGATGGCGCACCAGTGCGTG CTGCAGCAGGGGATGACGCCGCAGCAGTGCTCCGCGGTGCTGGTCTCCGT CGCCATGCAGCGCGGCTCGCTCGACAACGCCACCGCGCTAGTCGTCGACC TGCGGGGAATCTGGGGGGCGAGCGCTGCCGCTGCCGCTGCTGCGGGCGAC GGCGGCGCGCTGCCCACCGCAACGAGCGCCGCCGCCGCGCCGCTGCTGCT GCAGCGCCAGCTCAGCGCT
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Coding sequence (CDS) from alignment at Contig_34:147245..149263-

>mRNA_8249 ID=mRNA_8249|Name=jgi.p|Trimin1|152900|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=969bp|location=Sequence derived from alignment at Contig_34:147245..149263- (Tribonema minus UTEX_B_3156 )
CTCGCGCAGCAGGGCATCGCCGTCGGTGTGTGCTCCGTCAAGGGCAAGCG
CCCCTACATGGAGGACGAGTACCGCGTGCTGGCACACCTGGAGACGACGC
CGGGGGCGGGGGCGTGGGGGCTAGACGAGGGGGGCGATGGGAGGGGGGCA
GGGGGAGGGGGGGGGTTGAGAACGGCCTTTTTCGGCGTCTTCGATGGGCA
CGCAGGCGGGCGCTGCAGCCGAGCGCTGACGCAGACGCTGGCGCAGTGCG
TGGCGCGCGACCCCGAGTTTCAGCGCGGCGGCGACCTGAGCACTGCCATC
GCACGCGGCTTTGCGCGCGCCAACGCTGACTTCCTGCGCAAGGCCGAGAG
GTTCAACGCGAATGACGGAAGCACGGCGGTGACGGCGTTTCTGAGGGGGC
GCACGCTGACGGTGGCGAACGTGGGGGATTCGCGCGCGGTGCTGGTGTGC
GCGGGGGGGCGCGTTGTGGCGCTGTCGTTTGACCACAAGCCCAACAGGCC
GGAGGAGCGGCGGCGCATACAGGCCTGCGGCGGGCGCGTGATCTTCAGCT
TTGGCGTGCCGCGCGTCAACGGCATCCTCGCAGTGAGCCGCGCCTTCGGC
GACAGAAACATGCGCGGGGCCATAAACGCAGAGCCCGAACTTCAAGTGCG
CAATCTTGAAGTCGGCGACAAGTTCCTCATCCTGGCGACCGACGGCGTGT
GGGACGTTGTCAGCAGCGCCGAGTGCGCGGCGATGGCGCACCAGTGCGTG
CTGCAGCAGGGGATGACGCCGCAGCAGTGCTCCGCGGTGCTGGTCTCCGT
CGCCATGCAGCGCGGCTCGCTCGACAACGCCACCGCGCTAGTCGTCGACC
TGCGGGGAATCTGGGGGGCGAGCGCTGCCGCTGCCGCTGCTGCGGGCGAC
GGCGGCGCGCTGCCCACCGCAACGAGCGCCGCCGCCGCGCCGCTGCTGCT
GCAGCGCCAGCTCAGCGCT
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