Trimin1|142454|gw1.34.57.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|142454
Unique NameTrimin1|142454|gw1.34.57.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length65
Homology
BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A835YWC4_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC4_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.400e-40
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 65
            PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH
Sbjct:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 65          
BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A835YZZ2_9STRA (U-box domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZZ2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.510e-31
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 0
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 65
            PAH LCPI LDWLVNPVITPSG TYS+ EL+LWVRENGTDP+ARSRLAMSEVI NLAI  ATAVH
Sbjct:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAI--ATAVH 63          
BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A836CKT5_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKT5_9STRA)

HSP 1 Score: 109 bits (272), Expect = 5.480e-30
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 65
            PAH LCP  LDWLVNP ITPSGITYSR EL+LWVRENGTDP+ARSRL +SEVI NLAI  ATAVH
Sbjct:    1 PAHFLCPTFLDWLVNPAITPSGITYSRGELELWVRENGTDPIARSRLGLSEVIPNLAI--ATAVH 63          
BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A835Z5B2_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 8.870e-29
Identity = 53/64 (82.81%), Postives = 56/64 (87.50%), Query Frame = 0
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAV 64
            PAH L PISL WLVNPV+TPSGITYSREEL+LWVRENGTDP+AR RLAMSEV  NLAI  ATAV
Sbjct:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPNLAI--ATAV 62          
BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A836C868_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C868_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.240e-28
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 0
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 65
            PAH LCPISLDWLVNPV TPSGIT  R EL+LWV ENGTDP+ARSRLA SEVI NLA+  ATAVH
Sbjct:   21 PAHFLCPISLDWLVNPVTTPSGITSPRGELELWVSENGTDPIARSRLATSEVIPNLAV--ATAVH 83          
BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A836CBI8_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI8_9STRA)

HSP 1 Score: 103 bits (256), Expect = 9.370e-28
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 0
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAI 58
            PAH +CPISLDW VNPV+TPSGITYSR EL+LWV ENGTDP+ARSRL +SEV+ N+AI
Sbjct:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 58          
BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A835Z2F1_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.580e-24
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 0
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 65
            PAH LCPISLDWLVNPVITPSGITYSR EL+LWVRENGTDP+ARS L     IS L +     VH
Sbjct:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL-----ISPLQLQSTIIVH 60          
BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A7S4FZ85_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FZ85_9EUGL)

HSP 1 Score: 68.2 bits (165), Expect = 2.820e-12
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 0
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 65
            PAHLLCPI+L  + +PVITPSG TY R+ ++ W+  +GTDP  R  L   ++I N  +     VH
Sbjct:  163 PAHLLCPITLQVMTDPVITPSGETYERQAIEQWLETHGTDPQTRRPLTKEQLIPNRRLKETVEVH 227          
BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A2N1MYB8_9GLOM (RING-type E3 ubiquitin transferase n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N1MYB8_9GLOM)

HSP 1 Score: 62.8 bits (151), Expect = 1.250e-10
Identity = 24/55 (43.64%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISN 55
            P+  +CPISL+W+ +PV+TPSG++Y R  L+ W+R +  DP+ R  L + +V +N
Sbjct:   95 PSQYMCPISLNWMEDPVVTPSGVSYDRALLEEWLRNDPHDPLTREVLTIDQVYAN 149          
BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A7S1IXJ3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IXJ3_9EUGL)

HSP 1 Score: 61.2 bits (147), Expect = 1.210e-9
Identity = 23/55 (41.82%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISN 55
            P H +CPI+++ + +PVITPSG +Y R  L+ W+ E G++P+ R  L+ +++I N
Sbjct:  165 PTHYICPITMEVMRDPVITPSGNSYERSALESWIMEKGSEPLTRESLSRTQLIPN 219          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142454 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YWC4_9STRA2.400e-40100.00U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835YZZ2_9STRA2.510e-3184.62U-box domain-containing protein (Fragment) n=2 Tax... [more]
A0A836CKT5_9STRA5.480e-3081.54U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A835Z5B2_9STRA8.870e-2982.81U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A836C868_9STRA3.240e-2880.00U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A836CBI8_9STRA9.370e-2877.59U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z2F1_9STRA1.580e-2472.31U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S4FZ85_9EUGL2.820e-1246.15Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A2N1MYB8_9GLOM1.250e-1043.64RING-type E3 ubiquitin transferase n=2 Tax=Rhizoph... [more]
A0A7S1IXJ3_9EUGL1.210e-941.82Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003613U-box domainSMARTSM00504Ubox_2coord: 3..65
e-value: 2.3E-8
score: 43.8
IPR003613U-box domainPFAMPF04564U-boxcoord: 1..58
e-value: 7.0E-13
score: 48.6
IPR003613U-box domainPROSITEPS51698U_BOXcoord: 1..65
score: 13.270315
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 1..58
e-value: 1.1E-15
score: 58.7
NoneNo IPR availablePANTHERPTHR46803:SF2E3 UBIQUITIN-PROTEIN LIGASE CHIPcoord: 1..60
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 1..58
IPR045200E3 ubiquitin-protein ligase CHIP/LubXPANTHERPTHR46803E3 UBIQUITIN-PROTEIN LIGASE CHIPcoord: 1..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_34contigContig_34:797542..797736 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142454mRNA_8318Tribonema minus UTEX_B_3156 mRNAContig_34 797542..797736 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|142454|gw1.34.57.1 ID=Trimin1|142454|gw1.34.57.1|Name=jgi.p|Trimin1|142454|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=65bp
PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMS
EVISNLAIMFATAVH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003613Ubox_domain
IPR013083Znf_RING/FYVE/PHD
IPR045200CHIP/LubX