mRNA_8318 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|142454
Unique NamemRNA_8318
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A835YWC4_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC4_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.400e-40
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 195
            PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH
Sbjct:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 65
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BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A835YZZ2_9STRA (U-box domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZZ2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.510e-31
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 195
            PAH LCPI LDWLVNPVITPSG TYS+ EL+LWVRENGTDP+ARSRLAMSEVI NLAI  ATAVH
Sbjct:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAI--ATAVH 63
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BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A836CKT5_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKT5_9STRA)

HSP 1 Score: 109 bits (272), Expect = 5.480e-30
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 195
            PAH LCP  LDWLVNP ITPSGITYSR EL+LWVRENGTDP+ARSRL +SEVI NLAI  ATAVH
Sbjct:    1 PAHFLCPTFLDWLVNPAITPSGITYSRGELELWVRENGTDPIARSRLGLSEVIPNLAI--ATAVH 63
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BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A835Z5B2_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 8.870e-29
Identity = 53/64 (82.81%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAV 192
            PAH L PISL WLVNPV+TPSGITYSREEL+LWVRENGTDP+AR RLAMSEV  NLAI  ATAV
Sbjct:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPNLAI--ATAV 62
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BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A836C868_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C868_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.240e-28
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 195
            PAH LCPISLDWLVNPV TPSGIT  R EL+LWV ENGTDP+ARSRLA SEVI NLA+  ATAVH
Sbjct:   21 PAHFLCPISLDWLVNPVTTPSGITSPRGELELWVSENGTDPIARSRLATSEVIPNLAV--ATAVH 83
[Close]
BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A836CBI8_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI8_9STRA)

HSP 1 Score: 103 bits (256), Expect = 9.370e-28
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAI 174
            PAH +CPISLDW VNPV+TPSGITYSR EL+LWV ENGTDP+ARSRL +SEV+ N+AI
Sbjct:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 58
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BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A835Z2F1_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.580e-24
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 195
            PAH LCPISLDWLVNPVITPSGITYSR EL+LWVRENGTDP+ARS L     IS L +     VH
Sbjct:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL-----ISPLQLQSTIIVH 60
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BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A7S4FZ85_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FZ85_9EUGL)

HSP 1 Score: 68.2 bits (165), Expect = 2.820e-12
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 195
            PAHLLCPI+L  + +PVITPSG TY R+ ++ W+  +GTDP  R  L   ++I N  +     VH
Sbjct:  163 PAHLLCPITLQVMTDPVITPSGETYERQAIEQWLETHGTDPQTRRPLTKEQLIPNRRLKETVEVH 227
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BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A2N1MYB8_9GLOM (RING-type E3 ubiquitin transferase n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N1MYB8_9GLOM)

HSP 1 Score: 62.8 bits (151), Expect = 1.250e-10
Identity = 24/55 (43.64%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISN 165
            P+  +CPISL+W+ +PV+TPSG++Y R  L+ W+R +  DP+ R  L + +V +N
Sbjct:   95 PSQYMCPISLNWMEDPVVTPSGVSYDRALLEEWLRNDPHDPLTREVLTIDQVYAN 149
[Close]
BLAST of jgi.p|Trimin1|142454 vs. uniprot
Match: A0A7S1IXJ3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IXJ3_9EUGL)

HSP 1 Score: 61.2 bits (147), Expect = 1.210e-9
Identity = 23/55 (41.82%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISN 165
            P H +CPI+++ + +PVITPSG +Y R  L+ W+ E G++P+ R  L+ +++I N
Sbjct:  165 PTHYICPITMEVMRDPVITPSGNSYERSALESWIMEKGSEPLTRESLSRTQLIPN 219
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142454 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YWC4_9STRA2.400e-40100.00U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835YZZ2_9STRA2.510e-3184.62U-box domain-containing protein (Fragment) n=2 Tax... [more]
A0A836CKT5_9STRA5.480e-3081.54U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A835Z5B2_9STRA8.870e-2982.81U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A836C868_9STRA3.240e-2880.00U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A836CBI8_9STRA9.370e-2877.59U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z2F1_9STRA1.580e-2472.31U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S4FZ85_9EUGL2.820e-1246.15Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A2N1MYB8_9GLOM1.250e-1043.64RING-type E3 ubiquitin transferase n=2 Tax=Rhizoph... [more]
A0A7S1IXJ3_9EUGL1.210e-941.82Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_34contigContig_34:797542..797736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|142454|gw1.34.57.1
BRITEko00000,ko00001,ko01000,ko03041,ko03110,ko04121,ko04131
KEGG Pathwayko04120,ko04141,map04120,map04141
KEGG koko:K09561,ko:K12735
EC2.3.2.27,5.2.1.8
GOsGO:0000003,GO:0000151,GO:0000209,GO:0001664,GO:0001666,GO:0002931,GO:0003674,GO:0003824,GO:0004842,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005829,GO:0006457,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006807,GO:0006950,GO:0006986,GO:0006996,GO:0007010,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007178,GO:0007610,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010498,GO:0010604,GO:0010646,GO:0010648,GO:0010817,GO:0010927,GO:0012505,GO:0016043,GO:0016234,GO:0016567,GO:0016740,GO:0017015,GO:0018991,GO:0019098,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019900,GO:0019904,GO:0019941,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023057,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030036,GO:0030154,GO:0030162,GO:0030163,GO:0030239,GO:0030433,GO:0030512,GO:0030544,GO:0030579,GO:0030674,GO:0030911,GO:0030968,GO:0031032,GO:0031072,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031334,GO:0031371,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031625,GO:0031647,GO:0031674,GO:0031943,GO:0031974,GO:0031981,GO:0032091,GO:0032268,GO:0032270,GO:0032350,GO:0032434,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032991,GO:0033554,GO:0034450,GO:0034605,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036293,GO:0036294,GO:0036503,GO:0038127,GO:0038128,GO:0040011,GO:0042176,GO:0042221,GO:0042405,GO:0042692,GO:0042802,GO:0042803,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043292,GO:0043393,GO:0043412,GO:0043632,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045214,GO:0045732,GO:0045862,GO:0046332,GO:0046626,GO:0046627,GO:0046983,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051087,GO:0051098,GO:0051100,GO:0051128,GO:0051130,GO:0051146,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051604,GO:0051716,GO:0051787,GO:0051788,GO:0051865,GO:0051879,GO:0055001,GO:0055002,GO:0060090,GO:0060255,GO:0061061,GO:0061136,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070482,GO:0070534,GO:0070647,GO:0070887,GO:0070925,GO:0071218,GO:0071310,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0080090,GO:0090034,GO:0090035,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0101031,GO:0140096,GO:1900076,GO:1900077,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1902494,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903844,GO:1903845,GO:1990234,GO:2000058,GO:2000060
Preferred nameSTUB1
Descriptionregulation of chaperone-mediated protein complex assembly
COG categoryO
Max annot lvl33154|Opisthokonta
EggNOG OGsKOG4642@1|root,KOG4642@2759|Eukaryota,38EHB@33154|Opisthokonta
Evalue2.44e-09
Seed ortholog192875.XP_004349536.1
Hectar predicted targeting categoryother localisation
TranscriptId142776
TrackFilteredModels1
ProteinId142454
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142454gene_8318Tribonema minus UTEX_B_3156 geneContig_34 797542..797736 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8318_1exon_8318_1Tribonema minus UTEX_B_3156 exonContig_34 797542..797736 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8318CDS_8318Tribonema minus UTEX_B_3156 CDSContig_34 797542..797736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142454Trimin1|142454|gw1.34.57.1Tribonema minus UTEX_B_3156 polypeptideContig_34 797542..797736 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8318 ID=mRNA_8318|Name=jgi.p|Trimin1|142454|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=195bp|location=Sequence derived from alignment at Contig_34:797542..797736- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGGCACATCTTCTATGCCCCATTTCCCTCGATTGGCTGGTGAACCCTGT
AATCACCCCAAGTGGCATCACGTACTCACGGGAGGAACTTGACCTGTGGG
TGCGCGAGAATGGCACGGATCCTGTTGCTCGCAGCCGTCTTGCTATGAGT
GAGGTGATCTCTAATCTCGCAATAATGTTTGCAACTGCAGTGCAC
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protein sequence of jgi.p|Trimin1|142454

>Trimin1|142454|gw1.34.57.1 ID=Trimin1|142454|gw1.34.57.1|Name=jgi.p|Trimin1|142454|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=65bp
PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMS
EVISNLAIMFATAVH
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mRNA from alignment at Contig_34:797542..797736-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8318 ID=mRNA_8318|Name=jgi.p|Trimin1|142454|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=195bp|location=Sequence derived from alignment at Contig_34:797542..797736- (Tribonema minus UTEX_B_3156 )
CCGGCACATCTTCTATGCCCCATTTCCCTCGATTGGCTGGTGAACCCTGT
AATCACCCCAAGTGGCATCACGTACTCACGGGAGGAACTTGACCTGTGGG
TGCGCGAGAATGGCACGGATCCTGTTGCTCGCAGCCGTCTTGCTATGAGT
GAGGTGATCTCTAATCTCGCAATAATGTTTGCAACTGCAGTGCAC
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Coding sequence (CDS) from alignment at Contig_34:797542..797736-

>mRNA_8318 ID=mRNA_8318|Name=jgi.p|Trimin1|142454|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=195bp|location=Sequence derived from alignment at Contig_34:797542..797736- (Tribonema minus UTEX_B_3156 )
CCGGCACATCTTCTATGCCCCATTTCCCTCGATTGGCTGGTGAACCCTGT
AATCACCCCAAGTGGCATCACGTACTCACGGGAGGAACTTGACCTGTGGG
TGCGCGAGAATGGCACGGATCCTGTTGCTCGCAGCCGTCTTGCTATGAGT
GAGGTGATCTCTAATCTCGCAATAATGTTTGCAACTGCAGTGCAC
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