Trimin1|348982|estExt_Genemark1.C_Ctg_330129 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348982
Unique NameTrimin1|348982|estExt_Genemark1.C_Ctg_330129
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length222
Homology
BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: A0A836CE16_9STRA (Rab11A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE16_9STRA)

HSP 1 Score: 428 bits (1100), Expect = 2.340e-151
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 MAGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATDKAGSRSKTACSGCRT 221
            MAGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATDKAGSRSKTACSGCRT
Sbjct:    1 MAGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATDKAGSRSKTACSGCRT 221          
BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: H6WB88_VAULI (Rab11 family GTPase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB88_VAULI)

HSP 1 Score: 357 bits (915), Expect = 2.190e-122
Identity = 188/219 (85.84%), Postives = 200/219 (91.32%), Query Frame = 0
Query:    1 MAGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATDKAGSRSKTACSGC 219
            M  KDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFN+ESKSTIGVEFATKSIQTENK+IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+KH TFEN ERWLKELRDHAE+NIVVMLVGNKCDLRHLRTVSVEEA EFAEKN LAFIETSALD+SGVDTAFQ+ILTEIY+LMNKKQMS  G++    +GQGE IAL+SG  DKA S   +ACSGC
Sbjct:   55 MGAKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNMESKSTIGVEFATKSIQTENKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKHSTFENAERWLKELRDHAESNIVVMLVGNKCDLRHLRTVSVEEAKEFAEKNSLAFIETSALDSSGVDTAFQQILTEIYKLMNKKQMSGNGNNSLN-IGQGERIALNSGG-DKA-SGDGSACSGC 270          
BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: D8LQC1_ECTSI (Rab11A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC1_ECTSI)

HSP 1 Score: 345 bits (886), Expect = 8.910e-119
Identity = 181/218 (83.03%), Postives = 201/218 (92.20%), Query Frame = 0
Query:    1 MAGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATDKAGSRSKTACSG 218
            MAGK++EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTE K IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH+TFENVERWLKELRDHAEANIVVML+GNK DLRHLRTV+ EEA EFA+K+ LAF+ETSALDASGVD+AFQRILTEIYRLM++K ++A  ++  P L +GETIALSS A D A +RSK++C+G
Sbjct:    1 MAGKEDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLIGNKSDLRHLRTVTHEEAMEFAKKHNLAFLETSALDASGVDSAFQRILTEIYRLMSRKTIAAN-TATGPDLSRGETIALSS-ARDDASNRSKSSCAG 216          
BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: A0A7S2V252_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V252_9STRA)

HSP 1 Score: 343 bits (881), Expect = 4.970e-118
Identity = 179/216 (82.87%), Postives = 194/216 (89.81%), Query Frame = 0
Query:    1 MAGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATDKAGSRSKTAC 216
            MAGKD+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTE K+IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH+TFENVERWLKELRDHAEANIVVMLVGNK DLRHLR VS EEA  FAEKN LAFIETSALDASGVDTAFQRILTEIYRLM+++ + AGG+     + +GETI+L++   D + S SK+ C
Sbjct:    2 MAGKDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVSTEEAMAFAEKNNLAFIETSALDASGVDTAFQRILTEIYRLMSRRSVLAGGNDAV--ISRGETISLAATQGDGSRSSSKSNC 215          
BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: B5YND5_THAPS (Rab-type small GTPase n=3 Tax=Thalassiosira TaxID=35127 RepID=B5YND5_THAPS)

HSP 1 Score: 325 bits (833), Expect = 9.120e-111
Identity = 166/196 (84.69%), Postives = 177/196 (90.31%), Query Frame = 0
Query:    5 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIAL 200
            DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTE K IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH TFENVERWLKELRDHAEANIVVMLVGNK DLRHLR V  +EA  F+E++ LAFIETSALDASGVDTAFQRILTEIYRLM+++ M+A   +  P L  G+TI+L
Sbjct:    6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHGTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMAFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNMAAEDGANAPQLSSGQTISL 201          
BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: A0A7S0C1Y2_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C1Y2_9STRA)

HSP 1 Score: 320 bits (819), Expect = 3.490e-108
Identity = 164/203 (80.79%), Postives = 179/203 (88.18%), Query Frame = 0
Query:    4 KDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATD 206
            +DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQ E K IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH TFENVERWLKELRDHAEANIVVMLVGNK DLRHLR V  +EA  F+E++ LAFIETSALDASGVDTAFQRILTEIYRLM+++ + A  ++    LG G+ I L+  +T+
Sbjct:   34 RDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQAEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHSTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMSFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNIQAEEAANATTLGDGQKINLNDTSTN 236          
BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: A0A6V0CK96_9STRA (Hypothetical protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=A0A6V0CK96_9STRA)

HSP 1 Score: 318 bits (814), Expect = 7.910e-108
Identity = 167/213 (78.40%), Postives = 184/213 (86.38%), Query Frame = 0
Query:    5 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAG-GSSPTPALGQGETIALSSGATDKAGSRSKTAC 216
            DEEYDYLFK+VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQ E K IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH TFENVERWLKELRDHAEANIVVMLVGNK DLRHLR V  +EA  F+E++ LAFIETSALDASGVDTAFQRILTEIYRLM+++ ++A   ++  P+L  G++I+L  G  + AG   K  C
Sbjct:    6 DEEYDYLFKIVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQAEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHGTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMSFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNVAAEEANAGGPSLTAGQSISLGGG-NNNAGQGEKKGC 217          
BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: B7GDZ3_PHATC (Predicted protein n=5 Tax=Bacillariophyta TaxID=2836 RepID=B7GDZ3_PHATC)

HSP 1 Score: 316 bits (809), Expect = 3.970e-107
Identity = 165/205 (80.49%), Postives = 177/205 (86.34%), Query Frame = 0
Query:    5 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATDKAG 209
            DEEYDYLFK+VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQ E K IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH TFENVERWLKELRDHAEANIVVMLVGNK DLRHLR V  +EA  F+E++ LAFIETSALDASGVDTAFQRILTEIYRLM+++ M A  ++  P +  G  I+LS     K G
Sbjct:    6 DEEYDYLFKIVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQAEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHGTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMAFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNMQAEENANAP-MSAGHKISLSQSGDKKKG 209          
BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: A0A2R5G9J5_9STRA (Ras-related protein Rab-11A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9J5_9STRA)

HSP 1 Score: 314 bits (805), Expect = 1.610e-106
Identity = 157/199 (78.89%), Postives = 178/199 (89.45%), Query Frame = 0
Query:    1 MAGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIA 199
            M  +++EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF+L+SKSTIGVEFATKSI+T+ K IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH+TF+NVERWLKELRDHA++NIV+MLVGNK DLRHLR VS EEA  +AE N +AFIETSALD+SGVDTAFQRILTEIY+ M++K M  GG+    ++ QGE IA
Sbjct:    1 MLKQEDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLDSKSTIGVEFATKSIKTDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHLTFDNVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVSTEEAMAYAESNGIAFIETSALDSSGVDTAFQRILTEIYQKMSRKSMVGGGADADASITQGEPIA 199          
BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: L1J5D4_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J5D4_GUITC)

HSP 1 Score: 312 bits (799), Expect = 1.520e-105
Identity = 158/215 (73.49%), Postives = 185/215 (86.05%), Query Frame = 0
Query:    4 KDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATDKAGSRSKTACSG 218
            KD+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAT+SIQ + K IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+KH+TFENV+RWLKELRDHA+ NIV+MLVGNK DLRHLR V+ ++A  +AE+  L+FIETSALD++ V+ AFQ ILTEIYRL++++ M AG S  +P++GQGE + +S     KA  R K+ CSG
Sbjct:    3 KDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHVTFENVDRWLKELRDHADHNIVIMLVGNKSDLRHLRAVATDDARGYAEQRNLSFIETSALDSTNVEQAFQTILTEIYRLVSRRPMEAGESGDSPSVGQGEKVIVSREDETKAAER-KSKCSG 216          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348982 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CE16_9STRA2.340e-151100.00Rab11A, rab family GTPase n=1 Tax=Tribonema minus ... [more]
H6WB88_VAULI2.190e-12285.84Rab11 family GTPase n=1 Tax=Vaucheria litorea TaxI... [more]
D8LQC1_ECTSI8.910e-11983.03Rab11A, RAB family GTPase n=2 Tax=Ectocarpus TaxID... [more]
A0A7S2V252_9STRA4.970e-11882.87Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B5YND5_THAPS9.120e-11184.69Rab-type small GTPase n=3 Tax=Thalassiosira TaxID=... [more]
A0A7S0C1Y2_9STRA3.490e-10880.79Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A6V0CK96_9STRA7.910e-10878.40Hypothetical protein n=8 Tax=Bacillariophyta TaxID... [more]
B7GDZ3_PHATC3.970e-10780.49Predicted protein n=5 Tax=Bacillariophyta TaxID=28... [more]
A0A2R5G9J5_9STRA1.610e-10678.89Ras-related protein Rab-11A n=1 Tax=Hondaea fermen... [more]
L1J5D4_GUITC1.520e-10573.49Uncharacterized protein n=2 Tax=Guillardia theta T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 150..172
score: 38.41
coord: 35..51
score: 36.48
coord: 12..33
score: 55.2
coord: 53..75
score: 49.94
coord: 115..128
score: 54.23
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 17..216
e-value: 1.3E-7
score: 41.3
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 12..175
e-value: 3.5E-108
score: 375.4
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 9..175
e-value: 4.2E-26
score: 102.7
NoneNo IPR availablePIRSRPIRSR006809-1PIRSR006809-1coord: 88..169
e-value: 0.053
score: 10.2
coord: 11..59
e-value: 0.17
score: 8.6
NoneNo IPR availablePIRSRPIRSR006809-2PIRSR006809-2coord: 11..59
e-value: 0.17
score: 8.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..206
NoneNo IPR availablePANTHERPTHR47979DRAB11-RELATEDcoord: 4..216
NoneNo IPR availablePANTHERPTHR47979:SF21RAS-RELATED PROTEIN RABA1F-LIKEcoord: 4..216
NoneNo IPR availablePROSITEPS51420RHOcoord: 5..173
score: 9.972536
NoneNo IPR availablePROSITEPS51419RABcoord: 7..216
score: 35.480446
NoneNo IPR availableCDDcd01868Rab11_likecoord: 9..173
e-value: 1.44784E-131
score: 365.344
IPR001806Small GTPaseSMARTSM00174rho_sub_3coord: 14..172
e-value: 8.2E-12
score: 31.6
IPR001806Small GTPasePFAMPF00071Rascoord: 13..173
e-value: 4.4E-62
score: 208.4
IPR001806Small GTPasePROSITEPS51421RAScoord: 6..221
score: 17.353382
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 10..168
e-value: 2.1E-43
score: 145.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 2..192
e-value: 5.7E-73
score: 246.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 6..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:987702..993944 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348982mRNA_6016Tribonema minus UTEX_B_3156 mRNAContig_33 987460..994037 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348982|estExt_Genemark1.C_Ctg_330129 ID=Trimin1|348982|estExt_Genemark1.C_Ctg_330129|Name=jgi.p|Trimin1|348982|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=222bp
MAGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAT
KSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFE
NVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAF
IETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIAL
SSGATDKAGSRSKTACSGCRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase