mRNA_6007 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|348977 vs. uniprot
Match: A0A835Z4V2_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V2_9STRA) HSP 1 Score: 957 bits (2475), Expect = 0.000e+0 Identity = 580/580 (100.00%), Postives = 580/580 (100.00%), Query Frame = 1
Query: 1 MYQKSACVSVLSVILGNPFVPAKGRRKRPASALEGGGGAGSAGDXXXXXXXXXKEVVEVEVEDEGDEEGTPKIKATLVVAPASLRDQWAEETYARTSAGALDVLLFASQRMWSLERMVPAGDLLVAATRHQKHDAEEDEQAIAMARAANTRLSDHLKEHYKPKTAKDGTLKSAAPVPMKFHVVCQFREQRRGGAGPQPAPFGNGTFFRQAGDVAATVNLSKQQVKQMQDAVLADAAHDLAPTPVPVTYDTAEVMSTADVVITTCGTLRMCGAVLGLTHNFXXXXXXXXXXXXXXXXXXXXXKSMHWHRCVLDECQEVKAPTTAVAAMCQAIKSTHRWMAXXXXXXXXVSGTPLAGSIADLAGELAFLRVWPFTLQNDGFWERKVQAPFEGRRRDALPLVHALVEITSMRHSKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCLMETXXXXXXXXXKYLDGRPLLELPARTIEWAPVRLGEGDPSELYVYAYLELLCRGVCAHVMRTARGAPARRDYLRLQGLLSLLQKAAVHPSLVRIQTLDTLKRSLAPGTQVAKAAGGANAKKPSDMIPMLGSSR 1740
MYQKSACVSVLSVILGNPFVPAKGRRKRPASALEGGGGAGSAGDXXXXXXXXXKEVVEVEVEDEGDEEGTPKIKATLVVAPASLRDQWAEETYARTSAGALDVLLFASQRMWSLERMVPAGDLLVAATRHQKHDAEEDEQAIAMARAANTRLSDHLKEHYKPKTAKDGTLKSAAPVPMKFHVVCQFREQRRGGAGPQPAPFGNGTFFRQAGDVAATVNLSKQQVKQMQDAVLADAAHDLAPTPVPVTYDTAEVMSTADVVITTCGTLRMCGAVLGLTHNFXXXXXXXXXXXXXXXXXXXXXKSMHWHRCVLDECQEVKAPTTAVAAMCQAIKSTHRWMAXXXXXXXXVSGTPLAGSIADLAGELAFLRVWPFTLQNDGFWERKVQAPFEGRRRDALPLVHALVEITSMRHSKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCLMETXXXXXXXXXKYLDGRPLLELPARTIEWAPVRLGEGDPSELYVYAYLELLCRGVCAHVMRTARGAPARRDYLRLQGLLSLLQKAAVHPSLVRIQTLDTLKRSLAPGTQVAKAAGGANAKKPSDMIPMLGSSR
Sbjct: 1 MYQKSACVSVLSVILGNPFVPAKGRRKRPASALEGGGGAGSAGDXXXXXXXXXKEVVEVEVEDEGDEEGTPKIKATLVVAPASLRDQWAEETYARTSAGALDVLLFASQRMWSLERMVPAGDLLVAATRHQKHDAEEDEQAIAMARAANTRLSDHLKEHYKPKTAKDGTLKSAAPVPMKFHVVCQFREQRRGGAGPQPAPFGNGTFFRQAGDVAATVNLSKQQVKQMQDAVLADAAHDLAPTPVPVTYDTAEVMSTADVVITTCGTLRMCGAVLGLTHNFXXXXXXXXXXXXXXXXXXXXXKSMHWHRCVLDECQEVKAPTTAVAAMCQAIKSTHRWMAXXXXXXXXVSGTPLAGSIADLAGELAFLRVWPFTLQNDGFWERKVQAPFEGRRRDALPLVHALVEITSMRHSKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCLMETXXXXXXXXXKYLDGRPLLELPARTIEWAPVRLGEGDPSELYVYAYLELLCRGVCAHVMRTARGAPARRDYLRLQGLLSLLQKAAVHPSLVRIQTLDTLKRSLAPGTQVAKAAGGANAKKPSDMIPMLGSSR 580
BLAST of jgi.p|Trimin1|348977 vs. uniprot
Match: D7G2K8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI) HSP 1 Score: 187 bits (474), Expect = 1.430e-46 Identity = 112/274 (40.88%), Postives = 145/274 (52.92%), Query Frame = 1
Query: 904 KSMHWHRCVLDECQEVKAPTTAVAAMCQAIKSTHRWMAXXXXXXXXVSGTPLAGSIADLAGELAFLRVWPFTLQNDGFWERKVQAPFEGRRRDALPLVHALVEITSMRHSKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCLMETXXXXXXXXXKYLDGRPLLELPARTIEWAPVRLGEG----------DPSELYVYAYLELLCRGVCA----HVMR------TARGAPA----RRDYLRLQGLLSLLQKAAVHPSLVRIQTLDTLKRSL 1653
+ +++HRCVLDECQE+K TT +A MCQ +K++HRWM VSGTP+AG I L GEL FL+VWPF+LQNDGFWE+KV PFE + AL L+ AL+ + MRHSK Y+DGRPL+++PART+EW V P YVY YLE LC VC +V R +A GA A RR++ +L+ LL+L+QKA+ HP LV + LD LKRS+
Sbjct: 538 QKINFHRCVLDECQEIKTATTNIAQMCQQVKASHRWM---------VSGTPIAGKIDSLHGELNFLQVWPFSLQNDGFWEKKVGEPFEAKDYGALELLRALIGVVMMRHSKSQT--------------------------------------------YVDGRPLVKIPARTVEWRGVEFSSAVESGQYSNASAPHARYVYKYLENLCATVCRKMEENVARESSAGGSAGGAEANGMGRREFTKLKSLLALMQKASTHPGLVNLGQLDMLKRSI 758
BLAST of jgi.p|Trimin1|348977 vs. uniprot
Match: K8Z7M8_NANGC (Snf2 superfamily rad5 protein (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z7M8_NANGC) HSP 1 Score: 134 bits (338), Expect = 1.090e-31 Identity = 79/198 (39.90%), Postives = 98/198 (49.49%), Query Frame = 1
Query: 904 KSMHWHRCVLDECQEVKAPTTAVAAMCQAIKSTHRWMAXXXXXXXXVSGTPLAGSIADLAGELAFLRVWPFTLQNDGFWERKVQAPFEGRRRDALPLVHALVEITSMRHSKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCLMETXXXXXXXXXKYLDGRPLLELPARTIEWAPVRLGEGDP-SELYVYAYLELL 1494
+ +HWHR +LDECQE++ T+A+A +C + +THRWM VSGTPL S+ DL GEL FL V PF+L NDGFWE KV P+ R AL L+H LV + MRHSKG G PL+ +P RTI W PV EG SE + YAYLE+L
Sbjct: 164 RHVHWHRVILDECQEIRTSTSAIAKLCSVLHATHRWM---------VSGTPLFASVDDLFGELQFLAVSPFSLANDGFWEAKVGGPWRRREESALRLLHLLVSVCMMRHSKGQVYACT-------------------------------------------GSPLVAMPTRTITWQPV---EGSSVSEQFCYAYLEVL 306
BLAST of jgi.p|Trimin1|348977 vs. uniprot
Match: A0A4D9CZ02_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ02_9STRA) HSP 1 Score: 139 bits (349), Expect = 9.180e-31 Identity = 133/460 (28.91%), Postives = 186/460 (40.43%), Query Frame = 1
Query: 187 DEGDEEGTPKIKATLVVAPASLRDQWAEETYARTSAGALDVLLFASQRMWSLERMVPAGDLLVAATRHQKHDAEEDEQAIAMARAANTRLSDHLKEHYKPKTAKDG----TLKSAAPVPMKFHV---VCQFREQ------RRGGAGP-QPAPFGNGTFFRQAGDVAATVNLSKQQVKQMQDAVLADAAHDLAPTPVPVTYDTAEVMSTADVVITTCGTLRMCGAVLGLTHNFXXXXXXXXXXXXXXXXXXXXXKSMHWHRCVLDECQEVKAPTTAVAAMCQAIKSTHRWMAXXXXXXXXVSGTPLAGSIADLAGELAFLRVWPFTLQNDGFWERKVQAPFEGRRRDALPLVHALVEITSMRHSKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCLMETXXXXXXXXXKYLDGRPLLELPARTIEWAPVRLGEGDP-SELYVYAYLELLCRGVCAHVM 1521
+E D G P +ATL+V P +L +QW E T AGAL+ L+F N +++ L+E + +++G ++ SAA +P+ V VC ++ R+G AGP +P R + + +V ++ D L A + Y+ EV AD+VITT LR + +HWHR +LDECQE++ T+A+A +C + +THRWM VSGTPL S+ DL GEL FL V PF+L NDGFWE KV P+ R AL L+H LV + MRHSKG +G PL+ +P RTI W PV EG SE + YAYLE+L C ++
Sbjct: 586 EEEDLTGRPS-RATLIVVPGTLLNQWMMEVRKTTEAGALEALVF----------------------------------------RGNVKVTKSLRELRR--ISREGWVGSSIPSAAELPVGELVWAPVCLTPDRENQGSARQGTAGPASSSPTHPAASLRDPDRRRLRESYQRAKVLKVMDGPLG------ATVELRYWYERNEVWD-ADLVITTYDALRNANG-------------------------GPMLRQVHWHRVILDECQEIRTSTSAIARLCSVLHATHRWM---------VSGTPLFASVDDLFGELQFLAVSPFSLANDGFWEAKVGGPWRRREESALRLLHLLVSVCMMRHSKGQTYAC-------------------------------------------NGSPLVAMPTRTITWQPV---EGSSVSEQFCYAYLEVLAAKECIRLV 915
BLAST of jgi.p|Trimin1|348977 vs. uniprot
Match: A0A0M0JTW2_9EUKA (Snf2 super family n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JTW2_9EUKA) HSP 1 Score: 101 bits (252), Expect = 1.350e-18 Identity = 72/211 (34.12%), Postives = 95/211 (45.02%), Query Frame = 1
Query: 916 WHRCVLDECQEVKAPTTAVAAMCQAIKSTHRWMAXXXXXXXXVSGTPLAGSIADLAGELAFLRVWPFTL-QNDGFWERKVQAPFEGRRRDALPLVHALVEITSMRHSKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCLMETXXXXXXXXXKYLDGRPLLELPARTIEWAPVRLGEGDPSELYVYAYLELL-------CRGVCAHVMR 1524
W R VLDE QEV++ TT +A C+ + + RWM VSGTPL I DL GEL FLRV PF DGFW + P+E R+ AL +H L+ MRH+K ++DGR +L LP +T+E+ V+L E SEL YA+LE L CR + + +MR
Sbjct: 492 WRRVVLDEMQEVRSSTTELARKCERLHAPRRWM---------VSGTPLYDKIDDLQGELYFLRVSPFGAGHEDGFWRHVIGTPWEARQETALDALHVLLRGVMMRHAKSQT--------------------------------------------HIDGRSILSLPPKTLEYVAVQLAE---SELTSYAFLEALFVKEIRRCRALQSILMR 646
BLAST of jgi.p|Trimin1|348977 vs. uniprot
Match: A0A0G4IL78_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IL78_PLABS) HSP 1 Score: 96.7 bits (239), Expect = 4.710e-17 Identity = 71/236 (30.08%), Postives = 103/236 (43.64%), Query Frame = 1
Query: 916 WHRCVLDECQEVKAPTTAVAAMCQAIKSTHRWMAXXXXXXXXVSGTPLAGSIADLAGELAFLRVWPFTLQN--DGFWERKVQAPFEGRRRDALPLVHALVEITSMRHSKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCLMETXXXXXXXXXKYLDGRPLLELPARTIEWAPVRLGEGDPSELYVYAYLELLCRGVCAHVMRTARGAPARRDYLRLQGLLSLLQKAAVHPSLV 1617
W R VLDE QE+++ TT +A C++++ RWM VSGTPL SI DL GEL FL V PF L + DGFW ++ P+ R DAL L+H L++ +RHSK L GR L+ LP T + PV + + + ++V ++E L A + R R+D + +L L + + P+LV
Sbjct: 479 WKRIVLDEMQEIRSSTTELAVACRSLQCDLRWM---------VSGTPLFSSINDLNGELNFLAVMPFCLNDNDDGFWGARIGRPWAQREPDALKLLHTLLDGIMIRHSKSQTT--------------------------------------------LSGRALISLPPATKTYVPVSIDDTSNAHVFVVKFVERLA----ADIFELMRRGRLRQD----KSMLGLAKSICIAPALV 653
BLAST of jgi.p|Trimin1|348977 vs. uniprot
Match: A0A7S2JUA8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JUA8_9EUKA) HSP 1 Score: 89.4 bits (220), Expect = 9.500e-15 Identity = 67/194 (34.54%), Postives = 83/194 (42.78%), Query Frame = 1
Query: 916 WHRCVLDECQEVKAPTTAVAAMCQAIKSTHRWMAXXXXXXXXVSGTPLAGSIADLAGELAFLRVWPFTL-QNDGFWERKVQAPFEGRRRDALPLVHALVEITSMRHSKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCLMETXXXXXXXXXKYLDGRPLLELPARTIEWAPVRLGEGDPSELYVYAYLELL 1494
W R VLDE QEV++ TT +A C+ + + RWM VSGTPL I+DL GEL FLRV PF DGFW + P+ R AL + L+ MRHSK LDGR +L LP +TI++ PV+L EL YA LE L
Sbjct: 9 WKRVVLDEMQEVRSSTTELAKKCERLSTGRRWM---------VSGTPLYDKISDLQGELYFLRVSPFGAGHEDGFWNHVIGHPWALRADSALTALQVLLSRVMMRHSKSQTT--------------------------------------------LDGRSILSLPPKTIDYVPVQL---TGHELASYALLENL 146
BLAST of jgi.p|Trimin1|348977 vs. uniprot
Match: R7QAQ4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAQ4_CHOCR) HSP 1 Score: 88.6 bits (218), Expect = 1.340e-14 Identity = 71/245 (28.98%), Postives = 99/245 (40.41%), Query Frame = 1
Query: 916 WHRCVLDECQEVKAPTTAVAAMCQAIKSTHRWMAXXXXXXXXVSGTPLAGSIADLAGELAFLRVWPFTLQNDGFWERKVQAPFEGRRRDALPLVHALVEITSMRHSKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCLMETXXXXXXXXXKYLDGRPLLELPARTIEWAPVRLGEGDPSELYVYAYLELLCRGVCAHVMRTARGAPARRDYLRLQGLLSLLQKAAVHPSLVRIQTLDTLKRS 1650
W R +LDE Q + + +A ++S R++ ++GTP+ + DL GELAFLRVWPFTL +DGFWER + PF + A + L+ +T MRHSK LELP R+ E V+L EG +Y Y G C + G P L L+ LL +L A + P L+ + LD +RS
Sbjct: 220 WKRLILDEAQVTRRSSAQLARDTFNLRSESRFL---------MTGTPIVKGLEDLRGELAFLRVWPFTLFDDGFWERLIYCPFAAQESTAF--IDHLLNVTMMRHSKAQQLS-------------------------------------------------LELPPRSYEIIEVKL-EGSYRAVYCYIL------GCCLEELDDENG-PTDTCLLALRTLLRILLSACISPELLSLTALDLARRS 396
BLAST of jgi.p|Trimin1|348977 vs. uniprot
Match: A0A2V3IIE0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIE0_9FLOR) HSP 1 Score: 84.3 bits (207), Expect = 3.280e-13 Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 916 WHRCVLDECQEVKAPTTAVAAMCQAIKSTHRWMAXXXXXXXXVSGTPLAGSIADLAGELAFLRVWPFTLQNDGFWERKVQAPFEGRRRDALPLVHALVEITSMRHSK 1236
W R +LDE Q + +T +A ++S R++ ++GTP+ GSI D GELA LR+WPFTL+NDGFWE+ V P R R L+ +L+++T +RH+K
Sbjct: 523 WRRVILDEAQFTRRSSTQIARDVFNLRSNTRFL---------MTGTPVVGSIDDFKGELATLRIWPFTLENDGFWEKHVLGP--RRSRVGSSLLSSLLDVTMIRHTK 618
BLAST of jgi.p|Trimin1|348977 vs. uniprot
Match: A0A7R9UFY4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFY4_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 7.520e-11 Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 1
Query: 916 WHRCVLDECQEVKAPTTAVAAMCQAIKSTHRWMAXXXXXXXXVSGTPLAGSIADLAGELAFLRVWPFTLQN-DGFWERKVQAPFEGRRRDALPLVHALVEITSMRHSK 1236
W R LDE QEV++ T V+ C+ ++ RWM +SGTPL +AD+ GEL+FLR+ PF+ ++ DGFW + P+ R + + + L++ MRHSK
Sbjct: 111 WKRICLDEMQEVRSWNTVVSKECEKLQGHRRWM---------ISGTPLFTGVADIRGELSFLRISPFSAKHEDGFWNVCIANPWRRRDPNCVRKLERLMKAIMMRHSK 209 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348977 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6007 ID=mRNA_6007|Name=jgi.p|Trimin1|348977|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1743bp|location=Sequence derived from alignment at Contig_33:922909..934544- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTATCAGAAGTCGGCGTGCGTGTCGGTCCTCTCGGTTATTCTGGGCAAback to top protein sequence of jgi.p|Trimin1|348977 >Trimin1|348977|estExt_Genemark1.C_Ctg_330121 ID=Trimin1|348977|estExt_Genemark1.C_Ctg_330121|Name=jgi.p|Trimin1|348977|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=581bp MYQKSACVSVLSVILGNPFVPAKGRRKRPASALEGGGGAGSAGDAAGDSAback to top mRNA from alignment at Contig_33:922909..934544- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6007 ID=mRNA_6007|Name=jgi.p|Trimin1|348977|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=11636bp|location=Sequence derived from alignment at Contig_33:922909..934544- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_33:922909..934544- >mRNA_6007 ID=mRNA_6007|Name=jgi.p|Trimin1|348977|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1743bp|location=Sequence derived from alignment at Contig_33:922909..934544- (Tribonema minus UTEX_B_3156 )back to top |